Wall clock time and date at job start Sun Mar 29 2020 23:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38501 * 119.76109 * 2 1 4 4 C 1.38105 * 120.32694 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.06859 * 179.97438 * 4 3 2 6 6 C 1.39974 * 119.86275 * 0.02562 * 4 3 2 7 7 C 1.43201 * 120.23499 * 179.97438 * 6 4 3 8 8 N 4.80608 * 137.01496 * 359.97438 * 3 1 2 9 9 C 1.40472 * 119.53742 * 359.97438 * 6 4 3 10 10 S 1.76200 * 120.16701 * 179.97438 * 9 6 4 11 11 C 1.81403 * 103.00241 * 180.02562 * 10 9 6 12 12 C 1.50692 * 109.47292 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00396 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00150 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99972 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00256 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46986 * 60.00503 * 16 14 12 18 18 H 1.48501 * 109.47446 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47457 * 300.00517 * 16 14 12 20 20 C 1.38028 * 119.76370 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47318 * 89.99558 * 1 2 3 22 22 H 1.08996 * 109.47436 * 210.00073 * 1 2 3 23 23 H 1.09007 * 109.47209 * 330.00058 * 1 2 3 24 24 H 1.07995 * 119.83410 * 0.25487 * 3 2 1 25 25 H 1.09004 * 109.46954 * 300.00163 * 11 10 9 26 26 H 1.08996 * 109.47233 * 59.99467 * 11 10 9 27 27 H 0.96992 * 120.00069 * 179.97438 * 15 14 12 28 28 H 1.08009 * 119.93175 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2023 0.0000 4 6 3.5755 1.2160 0.0005 5 9 4.2408 2.3918 0.0000 6 6 4.2844 0.0090 0.0005 7 6 5.7164 0.0139 0.0005 8 7 6.8524 0.0179 0.0015 9 6 3.5814 -1.2071 0.0005 10 16 4.4570 -2.7361 -0.0001 11 6 3.1260 -3.9686 -0.0007 12 6 3.7228 -5.3524 -0.0007 13 1 4.7954 -5.4779 -0.0008 14 6 2.8994 -6.4583 -0.0005 15 7 1.5931 -6.3055 -0.0009 16 14 3.6390 -8.1735 -0.0012 17 1 4.4783 -8.3511 1.2109 18 1 2.5495 -9.1826 -0.0015 19 1 4.4774 -8.3507 -1.2140 20 6 2.1922 -1.1982 0.0005 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6480 2.1338 0.0042 25 1 2.5103 -3.8389 0.8894 26 1 2.5103 -3.8381 -0.8905 27 1 1.0138 -7.0835 -0.0012 28 1 1.6472 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894179764.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:36 Heat of formation + Delta-G solvation = -9.111917 kcal Electronic energy + Delta-G solvation = -14906.810759 eV Core-core repulsion = 12156.020526 eV Total energy + Delta-G solvation = -2750.790233 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.02304 -39.15714 -36.31140 -33.39128 -32.82135 -30.85613 -28.82903 -27.63607 -23.54529 -23.08322 -22.26769 -19.12892 -17.31685 -16.83729 -16.42878 -15.79732 -15.58325 -14.75206 -14.68394 -13.83918 -13.61718 -13.40771 -13.37806 -12.95440 -12.72844 -12.71798 -12.50724 -12.08213 -11.70002 -11.62478 -11.56877 -10.98190 -10.88665 -10.28773 -9.83253 -9.51340 -9.30981 -8.75930 -8.67055 -6.99163 -6.38057 -4.44457 0.67871 1.12186 2.02033 2.84482 2.98138 3.18833 3.22489 3.25566 3.36939 3.78038 3.95407 4.15820 4.21490 4.68308 5.00153 5.06572 5.19178 5.22492 5.47418 5.55936 5.80109 5.90149 6.01821 6.11706 6.40682 6.73540 6.76450 6.79129 7.54602 7.68534 7.74811 8.56338 9.20734 10.72917 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.005959 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.444903 B = 4697.592243 C = 5709.592120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.008 4.008 3 C -0.182 4.182 4 C 0.165 3.835 5 F -0.131 7.131 6 C -0.076 4.076 7 C 0.263 3.737 8 N -0.410 5.410 9 C 0.001 3.999 10 S -0.115 6.115 11 C 0.064 3.936 12 C -0.524 4.524 13 H 0.069 0.931 14 C 0.072 3.928 15 N -0.888 5.888 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.149 4.149 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.142 0.858 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.269 0.731 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 12.009 -0.023 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.011 4.011 3 C -0.204 4.204 4 C 0.142 3.858 5 F -0.110 7.110 6 C -0.089 4.089 7 C -0.052 4.052 8 N -0.086 5.086 9 C -0.117 4.117 10 S 0.138 5.862 11 C -0.083 4.083 12 C -0.563 4.563 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.525 5.525 16 Si 0.735 3.265 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.174 4.174 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.159 0.841 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.804 11.546 -0.020 11.686 hybrid contribution -1.369 -0.463 -0.007 1.445 sum -3.173 11.083 -0.027 11.529 Atomic orbital electron populations 1.20913 0.89969 1.03602 1.03173 1.19830 0.96575 0.91603 0.93102 1.20749 0.91132 0.99487 1.09070 1.17382 0.89927 0.79226 0.99276 1.91516 1.81028 1.45010 1.93429 1.15432 0.84920 0.92071 1.16451 1.25106 0.92170 0.94030 0.93917 1.81137 1.11645 1.06771 1.09059 1.22209 0.96487 0.97159 0.95860 1.85913 1.19062 0.94527 1.86698 1.21560 0.92203 0.93098 1.01423 1.20528 0.93776 0.88083 1.53922 0.91308 1.24918 0.94743 0.99584 0.94099 1.69910 1.02693 1.31322 1.48548 0.86364 0.78769 0.82176 0.79148 1.19757 1.20862 1.19764 1.21326 0.92024 0.99512 1.04526 0.90189 0.90419 0.91000 0.84069 0.93152 0.93152 0.92115 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.00 36.01 0.36 -0.70 15 2 C -0.01 -0.09 5.88 -104.60 -0.61 -0.71 15 3 C -0.18 -2.08 9.65 -39.53 -0.38 -2.47 15 4 C 0.17 2.29 7.28 -38.98 -0.28 2.00 15 5 F -0.13 -1.83 16.81 2.25 0.04 -1.79 15 6 C -0.08 -1.24 5.77 -106.48 -0.61 -1.85 15 7 C 0.26 4.75 13.93 -22.47 -0.31 4.43 15 8 N -0.41 -7.92 18.54 41.83 0.78 -7.15 15 9 C 0.00 0.01 6.16 -38.49 -0.24 -0.23 15 10 S -0.11 -2.36 20.83 -107.50 -2.24 -4.60 15 11 C 0.06 1.48 4.09 36.00 0.15 1.63 15 12 C -0.52 -13.68 9.13 -34.44 -0.31 -13.99 15 13 H 0.07 1.81 7.71 -52.49 -0.40 1.40 15 14 C 0.07 1.88 5.46 -17.82 -0.10 1.78 15 15 N -0.89 -23.81 13.29 55.43 0.74 -23.08 15 16 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 15 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 20 C -0.15 -2.26 8.99 -39.41 -0.35 -2.61 15 21 H 0.08 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.08 0.71 8.08 -51.93 -0.42 0.29 15 23 H 0.07 0.50 8.08 -51.92 -0.42 0.08 15 24 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 25 H 0.05 1.19 7.75 -51.92 -0.40 0.79 15 26 H 0.05 1.19 7.75 -51.93 -0.40 0.79 15 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 28 H 0.15 2.37 5.89 -52.48 -0.31 2.06 15 LS Contribution 276.43 15.07 4.17 4.17 Total: -1.00 -27.50 276.43 -6.59 -34.08 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: -2.34 Total: -4.14 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.70 Total: -12.71 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 1.51 Total: -30.22 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.24 Total: -4.60 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.50 -6.59 -34.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894179764.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.972 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds