Wall clock time and date at job start Sun Mar 29 2020 23:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38501 * 119.76109 * 2 1 4 4 C 1.38105 * 120.32694 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.06859 * 179.97438 * 4 3 2 6 6 C 1.39974 * 119.86275 * 0.02562 * 4 3 2 7 7 C 1.43201 * 120.23499 * 179.97438 * 6 4 3 8 8 N 4.80608 * 137.01496 * 359.97438 * 3 1 2 9 9 C 1.40472 * 119.53742 * 359.97438 * 6 4 3 10 10 S 1.76200 * 120.16701 * 179.97438 * 9 6 4 11 11 C 1.81403 * 103.00241 * 180.02562 * 10 9 6 12 12 C 1.50692 * 109.47292 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00396 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00150 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99972 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00256 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46986 * 60.00503 * 16 14 12 18 18 H 1.48501 * 109.47446 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47457 * 300.00517 * 16 14 12 20 20 C 1.38028 * 119.76370 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47318 * 89.99558 * 1 2 3 22 22 H 1.08996 * 109.47436 * 210.00073 * 1 2 3 23 23 H 1.09007 * 109.47209 * 330.00058 * 1 2 3 24 24 H 1.07995 * 119.83410 * 0.25487 * 3 2 1 25 25 H 1.09004 * 109.46954 * 300.00163 * 11 10 9 26 26 H 1.08996 * 109.47233 * 59.99467 * 11 10 9 27 27 H 0.96992 * 120.00069 * 179.97438 * 15 14 12 28 28 H 1.08009 * 119.93175 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2023 0.0000 4 6 3.5755 1.2160 0.0005 5 9 4.2408 2.3918 0.0000 6 6 4.2844 0.0090 0.0005 7 6 5.7164 0.0139 0.0005 8 7 6.8524 0.0179 0.0015 9 6 3.5814 -1.2071 0.0005 10 16 4.4570 -2.7361 -0.0001 11 6 3.1260 -3.9686 -0.0007 12 6 3.7228 -5.3524 -0.0007 13 1 4.7954 -5.4779 -0.0008 14 6 2.8994 -6.4583 -0.0005 15 7 1.5931 -6.3055 -0.0009 16 14 3.6390 -8.1735 -0.0012 17 1 4.4783 -8.3511 1.2109 18 1 2.5495 -9.1826 -0.0015 19 1 4.4774 -8.3507 -1.2140 20 6 2.1922 -1.1982 0.0005 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6480 2.1338 0.0042 25 1 2.5103 -3.8389 0.8894 26 1 2.5103 -3.8381 -0.8905 27 1 1.0138 -7.0835 -0.0012 28 1 1.6472 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894179764.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:36 Heat of formation + Delta-G solvation = -22.644756 kcal Electronic energy + Delta-G solvation = -14907.397587 eV Core-core repulsion = 12156.020526 eV Total energy + Delta-G solvation = -2751.377061 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.14492 -40.33038 -37.72490 -35.36412 -33.92852 -32.09017 -30.66011 -28.67928 -25.37476 -24.28559 -23.45274 -20.44139 -18.77097 -18.34797 -17.78422 -17.09889 -16.93255 -16.40276 -15.95489 -15.11720 -14.97851 -14.75943 -14.56020 -14.36349 -14.30708 -14.17892 -14.04906 -13.07349 -13.01958 -12.88773 -12.70759 -12.67534 -12.58731 -11.94737 -11.68266 -11.03100 -10.85237 -10.57501 -9.83110 -8.55826 -8.36952 -6.50093 -0.52806 -0.02995 0.52715 1.40356 1.41664 1.42464 1.51067 1.70689 1.72147 2.34874 2.50897 2.67540 2.98651 2.99030 3.66338 3.94073 4.13406 4.16120 4.61073 4.70349 4.82569 4.86298 4.86388 4.93665 4.96294 5.28624 5.40016 5.52690 5.69289 5.80760 6.26975 6.54835 7.18455 8.74309 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.005959 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.444903 B = 4697.592243 C = 5709.592120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.009 3.991 3 C -0.152 4.152 4 C 0.169 3.831 5 F -0.129 7.129 6 C -0.090 4.090 7 C 0.270 3.730 8 N -0.442 5.442 9 C -0.011 4.011 10 S -0.153 6.153 11 C 0.080 3.920 12 C -0.548 4.548 13 H 0.060 0.940 14 C 0.028 3.972 15 N -0.913 5.913 16 Si 0.969 3.031 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.156 4.156 21 H 0.096 0.904 22 H 0.072 0.928 23 H 0.103 0.897 24 H 0.188 0.812 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.273 0.727 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 13.622 -0.037 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.006 3.994 3 C -0.174 4.174 4 C 0.145 3.855 5 F -0.107 7.107 6 C -0.102 4.102 7 C -0.044 4.044 8 N -0.118 5.118 9 C -0.128 4.128 10 S 0.097 5.903 11 C -0.067 4.067 12 C -0.587 4.587 13 H 0.078 0.922 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.793 3.207 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.195 1.195 20 C -0.181 4.181 21 H 0.114 0.886 22 H 0.091 0.909 23 H 0.122 0.878 24 H 0.205 0.795 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.514 13.195 -0.034 13.655 hybrid contribution -0.948 -0.764 -0.004 1.217 sum -4.462 12.431 -0.037 13.207 Atomic orbital electron populations 1.21050 0.87041 1.05002 1.04570 1.20208 0.98438 0.90341 0.90454 1.21227 0.89911 1.00973 1.05281 1.17476 0.90705 0.78307 0.98972 1.91533 1.81246 1.44568 1.93344 1.15527 0.84038 0.92844 1.17744 1.25496 0.92682 0.93186 0.93065 1.81124 1.12570 1.07728 1.10409 1.21947 0.97059 0.95170 0.98590 1.85785 1.19085 0.96649 1.88817 1.21158 0.92435 0.93113 1.00017 1.20851 0.93614 0.89909 1.54302 0.92218 1.25714 0.95142 1.03122 0.93519 1.69987 1.03646 1.32455 1.48983 0.85433 0.78236 0.77923 0.79132 1.19450 1.19808 1.19460 1.21352 0.91125 1.00600 1.05030 0.88558 0.90889 0.87832 0.79510 0.94426 0.94416 0.91761 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.00 71.24 0.71 -0.89 15 2 C 0.01 0.18 5.88 -19.85 -0.12 0.07 15 3 C -0.15 -2.78 9.65 22.30 0.22 -2.57 15 4 C 0.17 4.20 7.28 22.66 0.16 4.36 15 5 F -0.13 -3.20 16.81 44.97 0.76 -2.45 15 6 C -0.09 -2.86 5.77 -21.07 -0.12 -2.98 15 7 C 0.27 9.83 13.93 88.33 1.23 11.06 15 8 N -0.44 -17.36 18.54 19.00 0.35 -17.01 15 9 C -0.01 -0.36 6.16 22.98 0.14 -0.22 15 10 S -0.15 -6.59 20.83 -56.49 -1.18 -7.77 15 11 C 0.08 3.88 4.09 71.23 0.29 4.17 15 12 C -0.55 -29.53 9.13 25.60 0.23 -29.30 15 13 H 0.06 3.25 7.71 -2.91 -0.02 3.23 15 14 C 0.03 1.47 5.46 84.65 0.46 1.93 15 15 N -0.91 -49.62 13.29 21.45 0.28 -49.34 15 16 Si 0.97 41.70 29.54 68.60 2.03 43.72 15 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 20 C -0.16 -4.61 8.99 22.38 0.20 -4.41 15 21 H 0.10 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.07 1.11 8.08 -2.39 -0.02 1.09 15 23 H 0.10 0.81 8.08 -2.38 -0.02 0.79 15 24 H 0.19 1.85 8.06 -2.91 -0.02 1.83 15 25 H 0.04 1.87 7.75 -2.39 -0.02 1.85 15 26 H 0.04 1.88 7.75 -2.39 -0.02 1.86 15 27 H 0.27 13.91 8.31 -92.71 -0.77 13.14 15 28 H 0.14 4.38 5.89 -2.91 -0.02 4.36 15 Total: -1.00 -61.16 276.43 6.85 -54.31 By element: Atomic # 1 Polarization: -3.89 SS G_CDS: 1.19 Total: -2.70 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 3.41 Total: -18.78 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 0.64 Total: -66.35 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.76 Total: -2.45 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: -6.59 SS G_CDS: -1.18 Total: -7.77 kcal Total: -61.16 6.85 -54.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894179764.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.666 kcal (2) G-P(sol) polarization free energy of solvation -61.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds