Wall clock time and date at job start Sun Mar 29 2020 22:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47313 * 2 1 4 4 C 1.46893 * 111.00563 * 297.01508 * 3 2 1 5 5 C 1.50703 * 109.46875 * 288.59489 * 4 3 2 6 6 H 1.08006 * 120.00115 * 1.10716 * 5 4 3 7 7 C 1.37874 * 120.00299 * 181.11135 * 5 4 3 8 8 N 1.31521 * 120.00371 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99938 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47004 * 90.00367 * 9 7 5 11 11 H 1.48499 * 109.46947 * 210.00436 * 9 7 5 12 12 H 1.48500 * 109.46874 * 330.00464 * 9 7 5 13 13 C 1.46907 * 110.99415 * 60.96494 * 3 2 1 14 14 C 1.50700 * 109.47430 * 66.04953 * 13 3 2 15 15 C 1.35342 * 126.75404 * 94.99236 * 14 13 3 16 16 N 1.35315 * 106.17733 * 180.02562 * 15 14 13 17 17 C 1.46495 * 125.87389 * 180.02562 * 16 15 14 18 18 C 1.53006 * 117.49574 * 343.61866 * 17 16 15 19 19 C 1.52997 * 60.00250 * 252.51286 * 18 17 16 20 20 N 1.28715 * 108.26123 * 0.02562 * 16 15 14 21 21 N 1.28636 * 110.17898 * 359.71795 * 20 16 15 22 22 H 1.08995 * 109.47095 * 299.27845 * 1 2 3 23 23 H 1.08999 * 109.47182 * 59.28418 * 1 2 3 24 24 H 1.09006 * 109.46746 * 179.27983 * 1 2 3 25 25 H 1.09010 * 109.47070 * 240.00488 * 2 1 3 26 26 H 1.09001 * 109.47312 * 120.00737 * 2 1 3 27 27 H 1.09002 * 109.47475 * 48.58464 * 4 3 2 28 28 H 1.08997 * 109.47979 * 168.59643 * 4 3 2 29 29 H 0.96996 * 119.99961 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.47472 * 306.04454 * 13 3 2 31 31 H 1.09009 * 109.46840 * 186.04362 * 13 3 2 32 32 H 1.07999 * 126.91675 * 0.04014 * 15 14 13 33 33 H 1.08992 * 115.55409 * 129.33094 * 17 16 15 34 34 H 1.08994 * 117.49542 * 0.02562 * 18 17 16 35 35 H 1.09002 * 117.49859 * 145.02107 * 18 17 16 36 36 H 1.08999 * 117.49837 * 252.51099 * 19 18 17 37 37 H 1.09001 * 117.52066 * 107.48162 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6080 2.0890 -1.2217 5 6 2.3878 1.5556 -2.3958 6 1 3.1035 0.7596 -2.2521 7 6 2.1877 2.0838 -3.6536 8 7 2.8685 1.6186 -4.6782 9 14 0.9494 3.4601 -3.9024 10 1 1.6254 4.7711 -3.7308 11 1 0.3800 3.3721 -5.2711 12 1 -0.1415 3.3311 -2.9032 13 6 1.5676 2.1030 1.1992 14 6 2.2092 1.4959 2.4201 15 6 3.3396 1.9160 3.0346 16 7 3.5347 1.0780 4.0789 17 6 4.6409 1.1435 5.0371 18 6 5.8613 1.9817 4.6509 19 6 5.9515 0.4544 4.6513 20 7 2.5814 0.2133 4.0858 21 7 1.7710 0.4385 3.1125 22 1 -0.3633 0.5026 0.8963 23 1 -0.3633 0.5249 -0.8835 24 1 -0.3633 -1.0277 -0.0129 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5429 1.9306 -1.3910 28 1 1.8036 3.1554 -1.1100 29 1 2.7274 1.9900 -5.5630 30 1 0.4835 2.0257 1.2819 31 1 1.8522 3.1525 1.1231 32 1 3.9608 2.7520 2.7490 33 1 4.3539 1.1266 6.0884 34 1 5.8408 2.4846 3.6841 35 1 6.3773 2.5166 5.4483 36 1 6.5267 -0.0155 5.4490 37 1 5.9903 -0.0481 3.6849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906271406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:37 Heat of formation + Delta-G solvation = 117.035549 kcal Electronic energy + Delta-G solvation = -18279.170071 eV Core-core repulsion = 15480.401944 eV Total energy + Delta-G solvation = -2798.768127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.22109 -39.13651 -38.37428 -34.77048 -33.64778 -32.67148 -31.26628 -29.50784 -26.63994 -25.38748 -24.65039 -23.58994 -22.42319 -21.83939 -20.76046 -18.87622 -18.43408 -17.47397 -16.76679 -16.58129 -16.20685 -15.76396 -15.59727 -15.02075 -14.65399 -14.46809 -14.05735 -13.62033 -13.28855 -13.08518 -12.79160 -12.71907 -12.55730 -12.40334 -12.24132 -12.15778 -12.01738 -11.85023 -11.55647 -11.47489 -11.40536 -10.73414 -10.71941 -10.17553 -8.93725 -8.22971 -6.25563 0.62582 1.37502 1.39121 1.41360 1.49703 1.52160 2.39340 2.49437 3.10664 3.25710 3.43661 3.59170 3.68684 3.85801 3.93914 4.15455 4.27521 4.39903 4.52383 4.57033 4.62384 4.64377 4.68104 4.78941 4.87631 4.94855 5.02682 5.06976 5.10513 5.17808 5.23688 5.43911 5.59693 5.75467 6.03495 6.36814 6.69359 6.80028 7.37396 7.53482 8.94199 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.029313 B = 0.005157 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.978269 B = 5427.803032 C = 5818.136222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 N -0.535 5.535 4 C 0.168 3.832 5 C -0.510 4.510 6 H 0.030 0.970 7 C 0.007 3.993 8 N -0.953 5.953 9 Si 0.947 3.053 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.248 1.248 13 C 0.133 3.867 14 C -0.022 4.022 15 C -0.025 4.025 16 N -0.261 5.261 17 C 0.031 3.969 18 C -0.141 4.141 19 C -0.169 4.169 20 N -0.116 5.116 21 N -0.295 5.295 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.001 0.999 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.219 0.781 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 4.514 21.194 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.060 4.060 3 N -0.258 5.258 4 C 0.042 3.958 5 C -0.548 4.548 6 H 0.049 0.951 7 C -0.190 4.190 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.172 1.172 13 C 0.003 3.997 14 C -0.160 4.160 15 C -0.177 4.177 16 N -0.054 5.054 17 C -0.070 4.070 18 C -0.178 4.178 19 C -0.207 4.207 20 N -0.094 5.094 21 N -0.161 5.161 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.235 0.765 33 H 0.186 0.814 34 H 0.125 0.875 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.689 3.275 21.776 22.328 hybrid contribution -0.688 0.931 -1.300 1.741 sum 3.001 4.206 20.476 21.118 Atomic orbital electron populations 1.22217 0.97521 1.02310 1.01251 1.21812 0.93614 0.90427 1.00193 1.62066 1.59823 1.02350 1.01585 1.20024 0.94058 0.94349 0.87418 1.21227 1.22126 1.19375 0.92091 0.95127 1.25837 0.98058 0.99713 0.95347 1.70065 1.43882 1.44906 1.00523 0.85718 0.79874 0.79561 0.77830 1.18571 1.21230 1.17163 1.20382 0.97070 0.97550 0.84675 1.21950 0.97276 0.96890 0.99920 1.23691 1.00907 1.01477 0.91577 1.46951 1.18948 1.18894 1.20612 1.22639 0.79512 1.12230 0.92639 1.23658 0.94442 0.93992 1.05741 1.23553 0.95987 0.96663 1.04466 1.78164 0.97443 1.14756 1.19008 1.74998 1.22181 1.15731 1.03203 0.91948 0.93381 0.91708 0.93493 0.91996 0.98112 0.94522 0.92566 0.93178 0.87650 0.76456 0.81400 0.87500 0.83022 0.84044 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.50 9.27 71.98 0.67 -5.83 16 2 C 0.07 2.88 5.73 86.30 0.49 3.37 16 3 N -0.53 -22.67 4.65 -905.36 -4.21 -26.88 16 4 C 0.17 7.94 3.66 85.56 0.31 8.26 16 5 C -0.51 -29.63 9.11 25.60 0.23 -29.40 16 6 H 0.03 2.02 7.69 -2.91 -0.02 2.00 16 7 C 0.01 0.41 5.47 84.65 0.46 0.87 16 8 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 9 Si 0.95 43.51 27.45 68.60 1.88 45.39 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.25 -10.56 6.57 99.48 0.65 -9.91 16 13 C 0.13 4.50 5.29 85.56 0.45 4.95 16 14 C -0.02 -0.70 5.96 41.59 0.25 -0.46 16 15 C -0.02 -0.65 10.85 83.49 0.91 0.26 16 16 N -0.26 -6.53 3.67 -327.17 -1.20 -7.73 16 17 C 0.03 0.45 7.06 45.00 0.32 0.77 16 18 C -0.14 -1.20 9.98 30.60 0.31 -0.90 16 19 C -0.17 -2.03 10.46 30.60 0.32 -1.71 16 20 N -0.12 -3.77 13.16 37.02 0.49 -3.28 16 21 N -0.29 -10.62 11.43 -48.60 -0.56 -11.17 16 22 H 0.06 2.17 6.33 -2.39 -0.02 2.16 16 23 H 0.05 1.90 6.21 -2.39 -0.01 1.88 16 24 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.05 2.27 7.15 -2.38 -0.02 2.25 16 26 H 0.06 2.61 6.51 -2.39 -0.02 2.59 16 27 H 0.00 0.06 5.02 -2.39 -0.01 0.05 16 28 H 0.04 1.63 7.19 -2.39 -0.02 1.62 16 29 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.05 1.69 6.04 -2.39 -0.01 1.67 16 31 H 0.11 3.07 7.87 -2.38 -0.02 3.05 16 32 H 0.22 4.00 7.27 -2.91 -0.02 3.98 16 33 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 1.06 7.02 -2.39 -0.02 1.05 16 35 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.90 301.28 2.44 -72.46 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.01 Total: 10.76 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 4.72 Total: -19.81 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -5.18 Total: -108.79 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -74.90 2.44 -72.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906271406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.494 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds