Wall clock time and date at job start Sun Mar 29 2020 23:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46811 * 2 1 4 4 C 1.36942 * 120.00131 * 270.32633 * 3 2 1 5 5 H 1.08006 * 119.99574 * 326.14990 * 4 3 2 6 6 C 1.38810 * 120.00246 * 146.15184 * 4 3 2 7 7 N 1.31621 * 119.99757 * 336.89591 * 6 4 3 8 8 Si 1.86799 * 119.99928 * 156.89951 * 6 4 3 9 9 H 1.48493 * 109.47369 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47039 * 119.99912 * 8 6 4 11 11 H 1.48510 * 109.46928 * 239.99585 * 8 6 4 12 12 C 1.46497 * 120.00138 * 90.32676 * 3 2 1 13 13 C 1.53006 * 109.47226 * 90.00057 * 12 3 2 14 14 C 1.52998 * 109.47211 * 180.02562 * 13 12 3 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.47192 * 112.85378 * 48.79974 * 16 15 14 18 18 N 7.42521 * 108.22431 * 68.80676 * 2 1 3 19 19 C 1.53781 * 113.61209 * 277.48847 * 16 15 14 20 20 C 1.53782 * 87.08391 * 220.02050 * 19 16 15 21 21 C 1.53775 * 87.07917 * 25.43360 * 20 19 16 22 22 H 1.09002 * 109.46734 * 60.00136 * 1 2 3 23 23 H 1.09004 * 109.47175 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47400 * 300.00309 * 1 2 3 25 25 H 1.08998 * 109.47553 * 240.00158 * 2 1 3 26 26 H 1.08998 * 109.46874 * 119.99373 * 2 1 3 27 27 H 0.96997 * 119.99689 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47498 * 330.00193 * 12 3 2 29 29 H 1.09001 * 109.47378 * 209.99759 * 12 3 2 30 30 H 1.09001 * 109.46699 * 300.00118 * 13 12 3 31 31 H 1.08995 * 109.47204 * 59.99887 * 13 12 3 32 32 H 1.09001 * 109.47101 * 299.99523 * 14 13 12 33 33 H 1.08995 * 109.47414 * 59.99667 * 14 13 12 34 34 H 1.09004 * 109.46989 * 299.99179 * 15 14 13 35 35 H 1.08995 * 109.47463 * 59.99529 * 15 14 13 36 36 H 1.09002 * 113.61794 * 334.57217 * 19 16 15 37 37 H 1.09002 * 113.61501 * 105.47344 * 19 16 15 38 38 H 1.08998 * 113.61338 * 270.88801 * 20 19 16 39 39 H 1.09006 * 113.61380 * 139.98289 * 20 19 16 40 40 H 1.09004 * 113.61751 * 220.01416 * 21 20 19 41 41 H 1.09000 * 113.61688 * 89.11655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2401 2.0291 -1.1859 5 1 2.5925 1.4773 -2.0449 6 6 2.0121 3.3948 -1.2840 7 7 1.1856 3.9858 -0.4473 8 14 2.8782 4.3939 -2.6035 9 1 3.7484 3.5005 -3.4095 10 1 1.8674 5.0294 -3.4865 11 1 3.7076 5.4462 -1.9631 12 6 2.2692 2.0695 1.2687 13 6 3.7166 1.8283 1.7021 14 6 3.9786 2.5466 3.0274 15 6 5.4261 2.3059 3.4605 16 6 5.6878 3.0236 4.7861 17 6 4.6519 2.7541 5.7964 18 7 3.8522 2.5497 6.5758 19 6 6.0187 4.5166 4.6234 20 6 7.0710 4.3232 5.7280 21 6 7.1220 2.8438 5.3113 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.0260 4.9400 -0.5161 28 1 1.5926 1.6839 2.0313 29 1 2.1015 3.1389 1.1413 30 1 3.8843 0.7588 1.8295 31 1 4.3933 2.2139 0.9396 32 1 3.8108 3.6161 2.9004 33 1 3.3019 2.1607 3.7898 34 1 5.5943 1.2364 3.5875 35 1 6.1025 2.6921 2.6980 36 1 6.4460 4.7658 3.6521 37 1 5.2016 5.1787 4.9099 38 1 6.6819 4.4803 6.7340 39 1 8.0011 4.8610 5.5440 40 1 7.1956 2.1553 6.1532 41 1 7.8509 2.6357 4.5281 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929464583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:46 Heat of formation + Delta-G solvation = 28.593220 kcal Electronic energy + Delta-G solvation = -18344.673006 eV Core-core repulsion = 15645.610075 eV Total energy + Delta-G solvation = -2699.062930 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80280 -38.11007 -36.87515 -35.30418 -33.74092 -31.45793 -29.72610 -27.03996 -26.55986 -25.41825 -23.72320 -22.52241 -21.67205 -21.33008 -18.57725 -17.38927 -16.87037 -16.28700 -16.18917 -15.75299 -15.56239 -15.38047 -14.94361 -14.43424 -14.15842 -13.92224 -13.81428 -13.64108 -13.19909 -13.15386 -12.97707 -12.79239 -12.67500 -12.48495 -12.41434 -12.05455 -11.95357 -11.84604 -11.70837 -11.62221 -11.50052 -11.23632 -11.05604 -10.89366 -10.49304 -8.56280 -7.76871 -5.35557 1.47901 1.51091 1.61625 1.67663 1.73708 2.55602 2.87265 3.27604 3.54662 3.63775 3.72257 3.95149 3.98529 4.21124 4.37498 4.41852 4.49574 4.67237 4.73768 4.78014 4.86522 4.91208 4.93536 4.96437 4.99654 5.03463 5.13682 5.15715 5.17267 5.25339 5.26775 5.33460 5.46695 5.49338 5.54548 5.62545 5.72103 5.95770 6.50425 6.54829 7.21215 7.92717 8.44267 9.19321 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.005396 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.852084 B = 5188.190450 C = 6020.881306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 N -0.605 5.605 4 C -0.260 4.260 5 H 0.058 0.942 6 C -0.041 4.041 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.266 1.266 10 H -0.296 1.296 11 H -0.285 1.285 12 C 0.141 3.859 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.088 4.088 16 C -0.008 4.008 17 C 0.255 3.745 18 N -0.492 5.492 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.106 4.106 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.249 0.751 28 H 0.008 0.992 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.645 -1.320 8.715 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.010 3.990 3 N -0.326 5.326 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.238 4.238 7 N -0.566 5.566 8 Si 0.784 3.216 9 H -0.191 1.191 10 H -0.223 1.223 11 H -0.211 1.211 12 C 0.016 3.984 13 C -0.154 4.154 14 C -0.150 4.150 15 C -0.127 4.127 16 C -0.012 4.012 17 C -0.062 4.062 18 N -0.168 5.168 19 C -0.159 4.159 20 C -0.177 4.177 21 C -0.144 4.144 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.365 -1.507 9.911 16.707 hybrid contribution -0.375 0.746 -0.825 1.173 sum 12.990 -0.761 9.086 15.870 Atomic orbital electron populations 1.22162 0.99394 1.00023 0.99639 1.21011 0.92263 0.86492 0.99205 1.44203 1.75249 1.10858 1.02332 1.19333 1.36989 0.91617 0.91115 0.92445 1.25753 0.98241 0.99449 1.00326 1.70150 1.35233 1.09933 1.41299 0.85392 0.78305 0.78791 0.79086 1.19067 1.22350 1.21084 1.20928 0.92898 0.99684 0.84933 1.21870 0.98474 0.99160 0.95860 1.21483 0.97090 1.00186 0.96200 1.21578 0.96176 1.01168 0.93743 1.19613 0.90946 1.00473 0.90167 1.28979 0.93020 0.91521 0.92634 1.81182 1.11820 1.10534 1.13250 1.23148 0.99313 0.91468 1.02011 1.22904 1.00209 0.96717 0.97892 1.23070 0.91679 0.97507 1.02158 0.95410 0.91389 0.95487 0.93477 0.93032 0.94147 0.97403 0.91492 0.93164 0.93038 0.92850 0.94653 0.90301 0.87643 0.86187 0.92182 0.91256 0.88307 0.90763 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.29 10.24 71.98 0.74 -5.55 16 2 C 0.14 5.80 6.39 86.38 0.55 6.35 16 3 N -0.61 -30.48 2.45 -702.00 -1.72 -32.21 16 4 C -0.26 -14.22 9.48 84.03 0.80 -13.42 16 5 H 0.06 3.12 7.93 -2.91 -0.02 3.10 16 6 C -0.04 -2.27 4.95 84.86 0.42 -1.85 16 7 N -0.92 -54.16 11.31 21.65 0.24 -53.91 16 8 Si 0.96 43.90 29.61 68.60 2.03 45.93 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.14 6.77 5.29 86.38 0.46 7.23 16 13 C -0.11 -4.29 5.54 30.60 0.17 -4.12 16 14 C -0.11 -3.45 4.82 30.59 0.15 -3.30 16 15 C -0.09 -1.85 4.74 30.59 0.15 -1.71 16 16 C -0.01 -0.16 0.96 -53.46 -0.05 -0.21 16 17 C 0.26 6.82 12.67 89.45 1.13 7.96 16 18 N -0.49 -16.20 18.53 19.99 0.37 -15.83 16 19 C -0.12 -1.92 7.20 31.12 0.22 -1.70 16 20 C -0.14 -1.71 7.79 31.12 0.24 -1.46 16 21 C -0.11 -1.27 7.21 31.12 0.22 -1.04 16 22 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 26 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 27 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.01 0.36 8.07 -2.39 -0.02 0.35 16 29 H 0.07 3.69 5.31 -2.39 -0.01 3.68 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.19 7.15 -2.39 -0.02 1.17 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.82 7.94 -2.39 -0.02 1.80 16 36 H 0.12 1.54 7.96 -2.39 -0.02 1.52 16 37 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 38 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 39 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 0.91 8.08 -2.38 -0.02 0.89 16 41 H 0.13 0.93 8.10 -2.39 -0.02 0.91 16 Total: -1.00 -66.87 336.84 7.09 -59.77 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.97 Total: 9.06 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.20 Total: -12.83 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -1.11 Total: -101.94 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.87 7.09 -59.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929464583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.368 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds