Wall clock time and date at job start Sun Mar 29 2020 22:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47035 * 2 1 4 4 C 1.52997 * 109.46882 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46980 * 185.00035 * 4 3 2 6 6 N 1.46904 * 115.54943 * 80.18190 * 5 4 3 7 7 C 1.46899 * 110.99922 * 40.00286 * 6 5 4 8 8 C 1.52999 * 109.47391 * 174.69069 * 7 6 5 9 9 H 1.09009 * 109.46913 * 54.99496 * 8 7 6 10 10 C 1.47205 * 109.46979 * 294.99929 * 8 7 6 11 11 N 7.94540 * 128.90268 * 38.08642 * 2 1 3 12 12 C 1.52995 * 109.47315 * 174.99515 * 8 7 6 13 13 C 1.50701 * 109.47003 * 184.99958 * 12 8 7 14 14 H 1.07999 * 120.00397 * 0.02562 * 13 12 8 15 15 C 1.37877 * 120.00028 * 180.02562 * 13 12 8 16 16 N 1.31516 * 120.00143 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99889 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46808 * 90.00130 * 17 15 13 19 19 H 1.48504 * 109.46857 * 209.99782 * 17 15 13 20 20 H 1.48495 * 109.47063 * 329.99957 * 17 15 13 21 21 C 1.52997 * 117.49605 * 294.51651 * 5 4 3 22 22 C 1.53000 * 60.03119 * 252.49612 * 21 5 4 23 23 H 1.08997 * 109.47063 * 60.00550 * 1 2 3 24 24 H 1.09005 * 109.47245 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47205 * 299.99688 * 1 2 3 26 26 H 1.09000 * 109.46670 * 239.99554 * 2 1 3 27 27 H 1.08998 * 109.46971 * 120.00230 * 2 1 3 28 28 H 1.08997 * 109.46869 * 60.00106 * 3 2 1 29 29 H 1.09004 * 109.47003 * 299.99929 * 3 2 1 30 30 H 1.08996 * 109.47540 * 64.99818 * 4 3 2 31 31 H 1.09008 * 109.47103 * 304.99555 * 4 3 2 32 32 H 1.00904 * 110.99380 * 163.94764 * 6 5 4 33 33 H 1.09002 * 109.46705 * 294.68734 * 7 6 5 34 34 H 1.09000 * 109.47846 * 54.68695 * 7 6 5 35 35 H 1.09000 * 109.47175 * 304.99676 * 12 8 7 36 36 H 1.08995 * 109.47316 * 65.00356 * 12 8 7 37 37 H 0.97001 * 119.99861 * 179.97438 * 16 15 13 38 38 H 1.08997 * 117.50447 * 359.97438 * 21 5 4 39 39 H 1.09003 * 117.49975 * 144.99836 * 21 5 4 40 40 H 1.09002 * 117.49898 * 107.50302 * 22 21 5 41 41 H 1.09004 * 117.50235 * 252.52007 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8795 0.1251 6 7 4.0787 3.4356 1.4848 7 6 4.5087 2.4298 2.4653 8 6 4.6220 3.0792 3.8460 9 1 3.6766 3.5583 4.1008 10 6 5.6939 4.0879 3.8273 11 7 6.5197 4.8667 3.8141 12 6 4.9479 2.0078 4.8884 13 6 4.9385 2.6251 6.2631 14 1 4.7213 3.6764 6.3816 15 6 5.2071 1.8478 7.3698 16 7 5.1994 2.3867 8.5694 17 14 5.5821 0.0293 7.1650 18 1 7.0445 -0.1575 6.9871 19 1 5.1323 -0.7079 8.3732 20 1 4.8677 -0.4922 5.9723 21 6 3.7841 3.8377 -1.0303 22 6 5.2060 3.3151 -0.8160 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 1.0083 -0.9322 31 1 3.9337 0.8529 0.8410 32 1 4.6553 4.2619 1.5380 33 1 3.7770 1.6226 2.5024 34 1 5.4785 2.0278 2.1722 35 1 4.2009 1.2154 4.8408 36 1 5.9339 1.5904 4.6844 37 1 5.3881 1.8397 9.3480 38 1 3.2264 3.4444 -1.8802 39 1 3.5885 4.8808 -0.7816 40 1 5.5834 2.5779 -1.5247 41 1 5.9458 4.0142 -0.4259 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934208320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:40 Heat of formation + Delta-G solvation = 20.932547 kcal Electronic energy + Delta-G solvation = -18170.189149 eV Core-core repulsion = 15470.794027 eV Total energy + Delta-G solvation = -2699.395122 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.17595 -36.83687 -35.07049 -34.26019 -32.86435 -30.97657 -29.95467 -26.80330 -24.46536 -23.06084 -22.47883 -21.54956 -21.01378 -19.17200 -16.96481 -16.82402 -16.28599 -15.73206 -15.12151 -14.49600 -14.06704 -13.77614 -13.44093 -13.25615 -13.04181 -12.99417 -12.81547 -12.48108 -12.16309 -12.08439 -11.67638 -11.61345 -11.46905 -11.35244 -11.21808 -10.99431 -10.87824 -10.57822 -10.40093 -10.25998 -10.22439 -9.97318 -9.74160 -9.33874 -8.62440 -8.17836 -6.11390 -4.12164 3.26125 3.33699 3.34202 3.49647 3.52381 3.66142 4.10845 4.37473 4.53025 4.64518 4.73264 4.80789 4.95762 5.08293 5.11036 5.23263 5.34226 5.41612 5.47824 5.54892 5.60567 5.64392 5.73112 5.78886 5.79917 5.87277 5.93055 6.01086 6.03674 6.09003 6.20220 6.25877 6.33048 6.38331 6.93675 7.03528 7.12435 7.33917 7.62545 8.30524 8.41287 8.92017 9.48351 11.01726 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.005635 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.633102 B = 4967.472154 C = 6094.203169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.083 4.083 5 C 0.062 3.938 6 N -0.650 5.650 7 C 0.064 3.936 8 C 0.015 3.985 9 H 0.117 0.883 10 C 0.237 3.763 11 N -0.467 5.467 12 C -0.003 4.003 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.167 4.167 22 C -0.221 4.221 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.342 0.658 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -4.869 -19.872 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.121 4.121 5 C -0.031 4.031 6 N -0.280 5.280 7 C -0.065 4.065 8 C -0.007 4.007 9 H 0.134 0.866 10 C -0.080 4.080 11 N -0.144 5.144 12 C -0.042 4.042 13 C -0.566 4.566 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.186 1.186 21 C -0.204 4.204 22 C -0.260 4.260 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.244 -3.842 -19.561 20.889 hybrid contribution 0.999 -1.110 -0.036 1.494 sum -5.245 -4.952 -19.597 20.882 Atomic orbital electron populations 1.21762 0.96001 1.01329 1.01847 1.21560 0.95852 0.97210 1.01801 1.21528 0.94350 0.96279 1.02848 1.21232 0.96267 0.92299 1.02327 1.21629 1.00558 0.94760 0.86145 1.60357 1.57818 1.07860 1.01943 1.22171 0.99699 0.94914 0.89751 1.19120 0.93464 0.92588 0.95559 0.86555 1.29160 0.93938 0.93311 0.91638 1.81020 1.11508 1.11795 1.10042 1.19623 0.97303 0.93502 0.93787 1.21028 1.49040 0.97784 0.88758 0.90791 1.24988 0.94483 0.98484 0.95118 1.69907 1.49000 1.36367 0.98215 0.86824 0.79065 0.85638 0.78074 1.20314 1.21214 1.18647 1.23057 0.98017 0.99705 0.99666 1.23712 0.92392 1.04635 1.05299 0.93036 0.93068 0.92464 0.92546 0.91856 0.90702 0.92309 0.91711 0.90579 0.83916 0.88666 0.94395 0.94229 0.96275 0.92554 0.88621 0.88739 0.88931 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.09 5.93 -26.73 -0.16 -1.25 16 3 C -0.11 -1.05 5.05 -26.73 -0.14 -1.18 16 4 C -0.08 -0.82 4.83 -26.73 -0.13 -0.94 16 5 C 0.06 0.68 2.19 -131.56 -0.29 0.39 16 6 N -0.65 -8.36 6.79 -99.93 -0.68 -9.04 16 7 C 0.06 0.89 4.12 -3.83 -0.02 0.88 16 8 C 0.01 0.26 2.42 -93.41 -0.23 0.03 16 9 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 10 C 0.24 4.72 12.90 -20.78 -0.27 4.45 16 11 N -0.47 -10.17 18.53 42.12 0.78 -9.39 16 12 C 0.00 -0.07 3.49 -27.89 -0.10 -0.16 16 13 C -0.53 -14.20 9.15 -34.44 -0.32 -14.52 16 14 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 17 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 21 C -0.17 -1.65 9.83 -26.73 -0.26 -1.91 16 22 C -0.22 -2.31 9.90 -26.69 -0.26 -2.57 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.52 7.86 -51.93 -0.41 0.12 16 30 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 31 H 0.08 0.78 5.97 -51.92 -0.31 0.47 16 32 H 0.34 4.66 7.52 -39.29 -0.30 4.37 16 33 H 0.10 1.21 6.71 -51.93 -0.35 0.87 16 34 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 35 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 36 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 0.83 8.02 -51.93 -0.42 0.41 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.09 1.02 8.12 -51.93 -0.42 0.59 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -29.87 337.12 -7.78 -37.66 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.18 Total: 1.83 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -1.89 Total: -15.76 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.88 Total: -44.73 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.87 -7.78 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934208320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.588 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds