Wall clock time and date at job start Sun Mar 29 2020 22:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47532 * 2 1 4 4 N 1.46903 * 109.47257 * 182.44233 * 3 2 1 5 5 C 1.46890 * 110.99941 * 199.84938 * 4 3 2 6 6 C 1.50702 * 109.46896 * 66.05013 * 5 4 3 7 7 H 1.07993 * 120.00237 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99822 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00262 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99949 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47056 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46811 * 119.99732 * 10 8 6 13 13 H 1.48495 * 109.47265 * 240.00330 * 10 8 6 14 14 C 1.46905 * 110.99546 * 75.89936 * 4 3 2 15 15 C 1.50699 * 109.46891 * 199.29962 * 14 4 3 16 16 N 1.36341 * 125.89226 * 254.96884 * 15 14 4 17 17 H 0.96992 * 125.63354 * 0.02562 * 16 15 14 18 18 C 1.36339 * 108.72541 * 179.97438 * 16 15 14 19 19 C 1.50700 * 125.88821 * 180.02562 * 18 16 15 20 20 C 1.34849 * 108.22227 * 359.72753 * 18 16 15 21 21 C 1.34851 * 125.88977 * 74.94817 * 15 14 4 22 22 C 1.50708 * 126.28989 * 0.02562 * 21 15 14 23 23 H 1.09008 * 109.46792 * 299.99833 * 1 2 3 24 24 H 1.08992 * 109.47122 * 59.99597 * 1 2 3 25 25 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46928 * 239.99751 * 2 1 3 27 27 H 1.09005 * 109.47463 * 120.00370 * 2 1 3 28 28 H 1.08995 * 109.46814 * 62.44580 * 3 2 1 29 29 H 1.08998 * 109.46705 * 302.44952 * 3 2 1 30 30 H 1.09000 * 109.47130 * 186.04894 * 5 4 3 31 31 H 1.08995 * 109.47559 * 306.05134 * 5 4 3 32 32 H 0.97003 * 119.99905 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.47108 * 79.29821 * 14 4 3 34 34 H 1.08996 * 109.47246 * 319.30193 * 14 4 3 35 35 H 1.09003 * 109.47330 * 89.99759 * 19 18 16 36 36 H 1.08998 * 109.47249 * 210.00000 * 19 18 16 37 37 H 1.08996 * 109.47144 * 330.00357 * 19 18 16 38 38 H 1.07999 * 126.29470 * 180.29765 * 20 18 16 39 39 H 1.09002 * 109.46780 * 84.76805 * 22 21 15 40 40 H 1.08993 * 109.47290 * 324.76717 * 22 21 15 41 41 H 1.08992 * 109.46933 * 204.76432 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5079 1.4428 -0.0590 5 6 4.0530 2.7261 0.4034 6 6 3.7532 2.8999 1.8700 7 1 3.2115 2.1340 2.4049 8 6 4.1705 4.0370 2.5289 9 7 4.8297 4.9700 1.8774 10 14 3.7982 4.2528 4.3467 11 1 3.0497 3.0699 4.8425 12 1 5.0710 4.3842 5.1003 13 1 2.9785 5.4755 4.5423 14 6 3.9803 1.1277 -1.4139 15 6 5.4159 0.6737 -1.3524 16 7 6.5029 1.4072 -1.7257 17 1 6.4813 2.3114 -2.0760 18 6 7.6253 0.6600 -1.5241 19 6 9.0397 1.0963 -1.8071 20 6 7.2521 -0.5345 -1.0216 21 6 5.8471 -0.5280 -0.9182 22 6 4.9849 -1.6547 -0.4098 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.7130 1.9434 0.9111 29 1 1.6413 1.9688 -0.8672 30 1 5.1319 2.7393 0.2490 31 1 3.5955 3.5393 -0.1599 32 1 5.1229 5.7701 2.3409 33 1 3.9069 2.0168 -2.0402 34 1 3.3658 0.3333 -1.8374 35 1 9.4570 1.5738 -0.9204 36 1 9.6426 0.2270 -2.0694 37 1 9.0426 1.8040 -2.6360 38 1 7.9093 -1.3475 -0.7504 39 1 4.6243 -2.2449 -1.2523 40 1 4.1355 -1.2443 0.1362 41 1 5.5712 -2.2897 0.2542 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137327671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:23 Heat of formation + Delta-G solvation = 6.459259 kcal Electronic energy + Delta-G solvation = -18886.913831 eV Core-core repulsion = 16186.891100 eV Total energy + Delta-G solvation = -2700.022731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.06551 -38.63687 -34.97257 -34.09649 -33.42384 -32.24227 -29.83901 -28.47711 -28.00615 -26.06033 -24.41305 -22.83793 -21.57678 -21.01821 -19.69175 -18.60417 -17.64678 -16.78844 -16.34264 -16.00462 -15.34467 -15.20754 -14.80124 -14.26989 -14.23660 -13.98039 -13.77034 -13.60981 -13.52755 -13.28088 -13.10280 -12.96116 -12.81152 -12.63528 -12.58245 -12.49399 -12.39700 -12.02975 -11.85718 -11.58970 -11.38789 -11.16450 -10.62934 -9.39885 -8.98201 -8.54438 -8.21618 -6.30253 1.37073 1.38189 1.41028 1.51815 2.13459 2.38702 2.53607 3.10891 3.43681 4.10927 4.15634 4.17491 4.24766 4.38704 4.49381 4.51976 4.61075 4.64891 4.75936 4.80056 4.82676 4.96021 4.97801 5.03196 5.09971 5.12382 5.19962 5.22945 5.29230 5.41274 5.43174 5.47924 5.56647 5.64949 5.72516 6.06311 6.29915 6.41139 6.42631 6.65081 6.86080 6.86830 7.38759 8.89009 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.008263 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.464784 B = 3387.795422 C = 4800.869998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.061 3.939 4 N -0.530 5.530 5 C 0.216 3.784 6 C -0.517 4.517 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.128 3.872 15 C 0.012 3.988 16 N -0.557 5.557 17 H 0.411 0.589 18 C 0.004 3.996 19 C -0.077 4.077 20 C -0.221 4.221 21 C -0.163 4.163 22 C -0.071 4.071 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.003 0.997 31 H -0.045 1.045 32 H 0.262 0.738 33 H 0.019 0.981 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.144 0.856 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -10.421 -7.887 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.067 4.067 4 N -0.254 5.254 5 C 0.089 3.911 6 C -0.555 4.555 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.203 1.203 14 C -0.001 4.001 15 C -0.100 4.100 16 N -0.153 5.153 17 H 0.247 0.753 18 C -0.109 4.109 19 C -0.134 4.134 20 C -0.246 4.246 21 C -0.170 4.170 22 C -0.128 4.128 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.021 0.979 31 H -0.027 1.027 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.474 -10.479 -7.605 12.957 hybrid contribution -0.177 1.881 0.250 1.905 sum 0.297 -8.598 -7.355 11.319 Atomic orbital electron populations 1.21703 0.94460 1.02368 1.01667 1.21464 0.96059 0.94909 1.02130 1.22097 0.86886 0.97819 0.99906 1.61991 1.08490 1.33478 1.21472 1.19288 0.93409 0.83961 0.94416 1.21482 1.35262 1.03389 0.95356 0.92130 1.25865 0.95060 0.95559 1.03144 1.70083 1.39885 1.09420 1.38104 0.85402 0.77985 0.78273 0.79406 1.18734 1.20657 1.20255 1.20465 0.90305 0.99077 0.90236 1.20106 0.88897 0.92924 1.08119 1.41989 1.05988 1.14990 1.52305 0.75311 1.20837 0.89631 0.93105 1.07293 1.20338 0.88275 1.02827 1.01970 1.20804 0.94753 0.98577 1.10421 1.19536 0.94469 0.96292 1.06734 1.20091 0.98158 0.94611 0.99980 0.93335 0.92523 0.90988 0.91420 0.92360 0.92315 0.96035 0.97898 1.02736 0.92885 0.96244 0.87906 0.91470 0.88467 0.90939 0.83781 0.91399 0.92263 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.11 -3.19 6.03 30.59 0.18 -3.00 16 3 C 0.06 2.33 4.79 86.30 0.41 2.74 16 4 N -0.53 -23.04 4.35 -905.39 -3.94 -26.98 16 5 C 0.22 11.66 4.55 85.56 0.39 12.05 16 6 C -0.52 -29.88 8.23 25.60 0.21 -29.67 16 7 H 0.06 3.47 7.31 -2.91 -0.02 3.45 16 8 C 0.00 0.08 5.46 84.66 0.46 0.54 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 11 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 C 0.13 4.73 4.95 85.56 0.42 5.16 16 15 C 0.01 0.45 5.90 41.08 0.24 0.69 16 16 N -0.56 -19.56 6.07 -171.12 -1.04 -20.60 16 17 H 0.41 13.37 8.96 -92.71 -0.83 12.53 16 18 C 0.00 0.14 7.16 41.08 0.29 0.43 16 19 C -0.08 -1.76 10.42 71.24 0.74 -1.02 16 20 C -0.22 -7.36 10.71 22.14 0.24 -7.12 16 21 C -0.16 -5.85 6.14 -19.99 -0.12 -5.98 16 22 C -0.07 -2.17 10.12 71.24 0.72 -1.45 16 23 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.82 6.71 -2.39 -0.02 1.80 16 27 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.06 2.56 6.58 -2.39 -0.02 2.55 16 29 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 30 H 0.00 0.17 7.42 -2.39 -0.02 0.15 16 31 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 34 H 0.10 3.27 6.48 -2.39 -0.02 3.25 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.96 7.97 -2.39 -0.02 1.94 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.30 334.13 2.41 -64.89 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.16 Total: 21.33 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.91 Total: -29.35 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.69 Total: -104.17 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.30 2.41 -64.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137327671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.349 kcal (2) G-P(sol) polarization free energy of solvation -67.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds