Wall clock time and date at job start Sun Mar 29 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 C 1.53006 * 109.47263 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47015 * 184.48972 * 4 3 2 6 6 C 1.36938 * 120.00339 * 97.21161 * 5 4 3 7 7 H 1.07998 * 120.00172 * 161.81596 * 6 5 4 8 8 C 1.38817 * 119.99806 * 341.81858 * 6 5 4 9 9 N 1.31620 * 119.99961 * 350.94943 * 8 6 5 10 10 Si 1.86802 * 119.99808 * 170.95295 * 8 6 5 11 11 H 1.48502 * 109.47016 * 89.99918 * 10 8 6 12 12 H 1.48495 * 109.46748 * 209.99848 * 10 8 6 13 13 H 1.48496 * 109.47298 * 329.99796 * 10 8 6 14 14 C 1.46499 * 120.00045 * 277.21109 * 5 4 3 15 15 C 1.50706 * 109.47366 * 275.38173 * 14 5 4 16 16 N 1.36337 * 125.89259 * 96.75741 * 15 14 5 17 17 H 0.97003 * 125.63823 * 0.02562 * 16 15 14 18 18 C 1.36348 * 108.72726 * 179.97438 * 16 15 14 19 19 C 1.50697 * 125.88569 * 180.02562 * 18 16 15 20 20 C 1.34849 * 108.21700 * 359.72494 * 18 16 15 21 21 C 1.34846 * 125.88685 * 276.73917 * 15 14 5 22 22 C 1.50706 * 126.29237 * 0.02562 * 21 15 14 23 23 H 1.09006 * 109.47164 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47718 * 300.00310 * 1 2 3 25 25 H 1.09002 * 109.47288 * 60.00256 * 1 2 3 26 26 H 1.08996 * 109.47434 * 239.99760 * 2 1 3 27 27 H 1.09001 * 109.46864 * 119.99418 * 2 1 3 28 28 H 1.08996 * 109.47162 * 59.99593 * 3 2 1 29 29 H 1.09001 * 109.46775 * 299.99472 * 3 2 1 30 30 H 1.08993 * 109.47033 * 64.48812 * 4 3 2 31 31 H 1.08997 * 109.46396 * 304.48623 * 4 3 2 32 32 H 0.96996 * 120.00118 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47543 * 155.37900 * 14 5 4 34 34 H 1.09008 * 109.47176 * 35.37677 * 14 5 4 35 35 H 1.08992 * 109.47468 * 90.00273 * 19 18 16 36 36 H 1.09013 * 109.46550 * 209.99804 * 19 18 16 37 37 H 1.08996 * 109.47392 * 329.99403 * 19 18 16 38 38 H 1.07996 * 126.29237 * 180.29343 * 20 18 16 39 39 H 1.09004 * 109.46812 * 84.75149 * 22 21 15 40 40 H 1.09001 * 109.47043 * 324.74691 * 22 21 15 41 41 H 1.09004 * 109.46955 * 204.74496 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8195 0.1075 6 6 4.4274 3.3214 1.3269 7 1 5.0496 4.2023 1.3824 8 6 4.0017 2.6977 2.4918 9 7 3.1038 1.7371 2.4337 10 14 4.7033 3.2220 4.1418 11 1 3.8669 4.3083 4.7126 12 1 4.7080 2.0618 5.0687 13 1 6.0924 3.7126 3.9557 14 6 4.1518 3.6596 -1.0890 15 6 5.4605 3.3949 -1.7878 16 7 5.6472 2.5508 -2.8421 17 1 4.9576 2.0190 -3.2694 18 6 6.9633 2.5787 -3.1975 19 6 7.5929 1.7907 -4.3171 20 6 7.6029 3.4382 -2.3785 21 6 6.6488 3.9522 -1.4783 22 6 6.9074 4.9471 -0.3763 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3635 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.9329 1.0001 -0.9283 31 1 3.9335 0.8606 0.8462 32 1 2.8067 1.3011 3.2476 33 1 4.0997 4.7095 -0.8009 34 1 3.3268 3.4263 -1.7623 35 1 7.5526 2.3721 -5.2381 36 1 8.6321 1.5742 -4.0693 37 1 7.0496 0.8557 -4.4536 38 1 8.6539 3.6851 -2.4059 39 1 7.0701 4.4162 0.5617 40 1 6.0471 5.6087 -0.2749 41 1 7.7921 5.5360 -0.6187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137331182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:20 Heat of formation + Delta-G solvation = 47.092319 kcal Electronic energy + Delta-G solvation = -19045.239782 eV Core-core repulsion = 16346.979033 eV Total energy + Delta-G solvation = -2698.260749 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58746 -36.23732 -33.56255 -32.27194 -31.51763 -30.51741 -28.29485 -27.07853 -26.52705 -23.80497 -22.87233 -20.83409 -19.86914 -19.62032 -18.18834 -16.81911 -15.85127 -15.17013 -14.22934 -14.12546 -13.51357 -13.42999 -13.32350 -12.93663 -12.79993 -12.54757 -12.32273 -12.13302 -11.80277 -11.67841 -11.44440 -11.39597 -11.14273 -10.95266 -10.68939 -10.51164 -10.35548 -10.11796 -10.01011 -9.84578 -9.56446 -9.25184 -8.32087 -7.98900 -7.14382 -6.67948 -5.62285 -3.09206 2.86811 3.42035 3.49106 3.50686 3.61674 3.90917 4.57095 5.33333 5.45029 5.47521 5.60080 5.71125 5.82153 5.89498 5.92333 5.94665 5.97937 6.04456 6.08018 6.27224 6.38210 6.42968 6.45608 6.57391 6.67904 6.75661 6.80774 6.82624 6.90063 6.97112 7.11727 7.24656 7.34508 7.74800 7.79529 7.87821 7.89748 8.17411 8.26002 8.49043 9.33914 9.91974 10.38336 11.37222 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.008387 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.632227 B = 3337.723607 C = 4745.541079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.114 4.114 4 C 0.178 3.822 5 N -0.586 5.586 6 C -0.238 4.238 7 H 0.075 0.925 8 C -0.006 4.006 9 N -0.905 5.905 10 Si 0.903 3.097 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.210 3.790 15 C 0.028 3.972 16 N -0.553 5.553 17 H 0.404 0.596 18 C -0.013 4.013 19 C -0.075 4.075 20 C -0.196 4.196 21 C -0.165 4.165 22 C -0.069 4.069 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.009 0.991 30 H -0.011 1.011 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 -0.162 -9.594 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.153 4.153 4 C 0.053 3.947 5 N -0.305 5.305 6 C -0.367 4.367 7 H 0.092 0.908 8 C -0.202 4.202 9 N -0.552 5.552 10 Si 0.734 3.266 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.081 3.919 15 C -0.088 4.088 16 N -0.149 5.149 17 H 0.240 0.760 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.221 4.221 21 C -0.171 4.171 22 C -0.127 4.127 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.028 0.972 30 H 0.007 0.993 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.323 -0.331 -9.481 9.768 hybrid contribution 0.083 -0.188 0.659 0.690 sum 2.406 -0.520 -8.822 9.159 Atomic orbital electron populations 1.21735 0.97661 0.99742 1.01023 1.21364 0.94030 0.99437 1.00175 1.22167 0.98669 0.93876 1.00617 1.20749 0.91725 0.85238 0.97019 1.44062 1.74782 1.09547 1.02152 1.19386 1.24056 1.10559 0.82728 0.90773 1.24881 0.98173 0.99574 0.97604 1.70087 1.31804 1.27384 1.25965 0.86265 0.78747 0.77370 0.84232 1.21724 1.21874 1.20705 1.19246 0.88427 0.95921 0.88290 1.21869 0.99838 0.95928 0.91122 1.41905 1.08160 1.36829 1.27986 0.76050 1.20100 0.84512 1.05346 1.02515 1.20173 1.00297 0.97933 0.94913 1.20455 0.98517 1.03323 0.99852 1.19156 0.92448 1.04634 1.00895 1.20066 0.99967 0.96292 0.96351 0.94326 0.92918 0.93982 0.94749 0.91974 0.88241 0.97209 0.99323 0.88908 0.94066 0.91078 0.94629 0.92022 0.90934 0.92511 0.85981 0.91770 0.92650 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.15 0.37 -2.02 16 2 C -0.11 -2.14 5.93 -26.73 -0.16 -2.30 16 3 C -0.11 -2.51 4.87 -26.73 -0.13 -2.64 16 4 C 0.18 4.21 4.88 -4.04 -0.02 4.19 16 5 N -0.59 -14.13 2.52 -174.61 -0.44 -14.57 16 6 C -0.24 -6.24 9.70 -15.06 -0.15 -6.39 16 7 H 0.07 1.91 6.41 -52.49 -0.34 1.57 16 8 C -0.01 -0.17 5.17 -17.43 -0.09 -0.26 16 9 N -0.91 -24.47 8.06 55.49 0.45 -24.02 16 10 Si 0.90 21.58 29.56 -169.99 -5.03 16.56 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.21 4.35 5.95 -5.19 -0.03 4.32 16 15 C 0.03 0.55 6.74 -81.79 -0.55 0.00 16 16 N -0.55 -9.44 6.07 -5.44 -0.03 -9.48 16 17 H 0.40 5.97 8.96 -40.82 -0.37 5.60 16 18 C -0.01 -0.21 7.16 -81.79 -0.59 -0.79 16 19 C -0.08 -0.89 10.42 36.00 0.38 -0.52 16 20 C -0.20 -3.48 10.71 -39.78 -0.43 -3.91 16 21 C -0.16 -3.23 6.14 -104.82 -0.64 -3.87 16 22 C -0.07 -1.27 9.30 36.01 0.34 -0.94 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.10 2.53 6.30 -51.93 -0.33 2.21 16 29 H 0.01 0.20 8.05 -51.93 -0.42 -0.22 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.09 2.50 5.96 -51.93 -0.31 2.19 16 32 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.07 1.46 7.31 -51.93 -0.38 1.08 16 34 H 0.04 0.69 8.02 -51.92 -0.42 0.28 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.06 1.29 7.60 -51.93 -0.39 0.89 16 40 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -28.04 328.27 -8.93 -36.97 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.12 Total: 4.73 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.70 Total: -15.13 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.03 Total: -48.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.04 -8.93 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137331182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.060 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds