Wall clock time and date at job start Sun Mar 29 2020 22:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 C 1.53006 * 109.47263 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47015 * 184.48972 * 4 3 2 6 6 C 1.36938 * 120.00339 * 97.21161 * 5 4 3 7 7 H 1.07998 * 120.00172 * 161.81596 * 6 5 4 8 8 C 1.38817 * 119.99806 * 341.81858 * 6 5 4 9 9 N 1.31620 * 119.99961 * 350.94943 * 8 6 5 10 10 Si 1.86802 * 119.99808 * 170.95295 * 8 6 5 11 11 H 1.48502 * 109.47016 * 89.99918 * 10 8 6 12 12 H 1.48495 * 109.46748 * 209.99848 * 10 8 6 13 13 H 1.48496 * 109.47298 * 329.99796 * 10 8 6 14 14 C 1.46499 * 120.00045 * 277.21109 * 5 4 3 15 15 C 1.50706 * 109.47366 * 275.38173 * 14 5 4 16 16 N 1.36337 * 125.89259 * 96.75741 * 15 14 5 17 17 H 0.97003 * 125.63823 * 0.02562 * 16 15 14 18 18 C 1.36348 * 108.72726 * 179.97438 * 16 15 14 19 19 C 1.50697 * 125.88569 * 180.02562 * 18 16 15 20 20 C 1.34849 * 108.21700 * 359.72494 * 18 16 15 21 21 C 1.34846 * 125.88685 * 276.73917 * 15 14 5 22 22 C 1.50706 * 126.29237 * 0.02562 * 21 15 14 23 23 H 1.09006 * 109.47164 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47718 * 300.00310 * 1 2 3 25 25 H 1.09002 * 109.47288 * 60.00256 * 1 2 3 26 26 H 1.08996 * 109.47434 * 239.99760 * 2 1 3 27 27 H 1.09001 * 109.46864 * 119.99418 * 2 1 3 28 28 H 1.08996 * 109.47162 * 59.99593 * 3 2 1 29 29 H 1.09001 * 109.46775 * 299.99472 * 3 2 1 30 30 H 1.08993 * 109.47033 * 64.48812 * 4 3 2 31 31 H 1.08997 * 109.46396 * 304.48623 * 4 3 2 32 32 H 0.96996 * 120.00118 * 179.97438 * 9 8 6 33 33 H 1.08993 * 109.47543 * 155.37900 * 14 5 4 34 34 H 1.09008 * 109.47176 * 35.37677 * 14 5 4 35 35 H 1.08992 * 109.47468 * 90.00273 * 19 18 16 36 36 H 1.09013 * 109.46550 * 209.99804 * 19 18 16 37 37 H 1.08996 * 109.47392 * 329.99403 * 19 18 16 38 38 H 1.07996 * 126.29237 * 180.29343 * 20 18 16 39 39 H 1.09004 * 109.46812 * 84.75149 * 22 21 15 40 40 H 1.09001 * 109.47043 * 324.74691 * 22 21 15 41 41 H 1.09004 * 109.46955 * 204.74496 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8195 0.1075 6 6 4.4274 3.3214 1.3269 7 1 5.0496 4.2023 1.3824 8 6 4.0017 2.6977 2.4918 9 7 3.1038 1.7371 2.4337 10 14 4.7033 3.2220 4.1418 11 1 3.8669 4.3083 4.7126 12 1 4.7080 2.0618 5.0687 13 1 6.0924 3.7126 3.9557 14 6 4.1518 3.6596 -1.0890 15 6 5.4605 3.3949 -1.7878 16 7 5.6472 2.5508 -2.8421 17 1 4.9576 2.0190 -3.2694 18 6 6.9633 2.5787 -3.1975 19 6 7.5929 1.7907 -4.3171 20 6 7.6029 3.4382 -2.3785 21 6 6.6488 3.9522 -1.4783 22 6 6.9074 4.9471 -0.3763 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3635 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.9329 1.0001 -0.9283 31 1 3.9335 0.8606 0.8462 32 1 2.8067 1.3011 3.2476 33 1 4.0997 4.7095 -0.8009 34 1 3.3268 3.4263 -1.7623 35 1 7.5526 2.3721 -5.2381 36 1 8.6321 1.5742 -4.0693 37 1 7.0496 0.8557 -4.4536 38 1 8.6539 3.6851 -2.4059 39 1 7.0701 4.4162 0.5617 40 1 6.0471 5.6087 -0.2749 41 1 7.7921 5.5360 -0.6187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137331182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:20 Heat of formation + Delta-G solvation = 33.655910 kcal Electronic energy + Delta-G solvation = -19045.822428 eV Core-core repulsion = 16346.979033 eV Total energy + Delta-G solvation = -2698.843396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.96523 -38.05622 -35.15274 -33.83551 -33.14297 -31.95891 -29.86107 -28.52322 -28.16475 -25.55184 -24.37249 -22.54011 -21.52115 -21.01915 -19.64446 -18.68021 -17.34055 -17.02899 -15.86403 -15.64372 -15.32342 -14.95594 -14.83118 -14.30140 -14.22345 -13.86548 -13.59916 -13.43252 -13.35440 -13.15674 -12.98440 -12.90640 -12.87755 -12.64993 -12.34976 -12.17677 -12.00579 -11.77949 -11.72838 -11.66764 -11.33265 -11.10075 -10.29067 -9.37018 -8.74479 -8.42358 -7.64022 -5.11440 1.46498 1.50275 1.52840 1.59137 2.16768 2.58884 2.62388 3.43582 3.85174 4.20862 4.34241 4.35869 4.41334 4.46917 4.58033 4.59189 4.60897 4.79079 4.81088 4.85978 4.90851 5.01358 5.05558 5.09569 5.11660 5.14656 5.27896 5.32355 5.34134 5.48584 5.54968 5.60059 5.74620 5.76743 5.94453 6.29850 6.35998 6.45276 6.51031 6.96551 7.32861 7.98999 8.40867 9.32063 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.008387 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.632227 B = 3337.723607 C = 4745.541079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.101 4.101 4 C 0.186 3.814 5 N -0.599 5.599 6 C -0.243 4.243 7 H 0.073 0.927 8 C -0.053 4.053 9 N -0.917 5.917 10 Si 0.955 3.045 11 H -0.289 1.289 12 H -0.299 1.299 13 H -0.279 1.279 14 C 0.215 3.785 15 C 0.002 3.998 16 N -0.550 5.550 17 H 0.415 0.585 18 C 0.003 3.997 19 C -0.074 4.074 20 C -0.223 4.223 21 C -0.184 4.184 22 C -0.064 4.064 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.017 0.983 30 H -0.001 1.001 31 H 0.058 0.942 32 H 0.241 0.759 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.139 0.861 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -0.635 -11.519 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.141 4.141 4 C 0.061 3.939 5 N -0.320 5.320 6 C -0.373 4.373 7 H 0.091 0.909 8 C -0.247 4.247 9 N -0.565 5.565 10 Si 0.785 3.215 11 H -0.217 1.217 12 H -0.226 1.226 13 H -0.205 1.205 14 C 0.087 3.913 15 C -0.113 4.113 16 N -0.147 5.147 17 H 0.252 0.748 18 C -0.110 4.110 19 C -0.131 4.131 20 C -0.247 4.247 21 C -0.191 4.191 22 C -0.122 4.122 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.156 0.844 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.813 -0.795 -11.434 11.801 hybrid contribution -0.007 -0.029 1.158 1.158 sum 2.806 -0.824 -10.276 10.684 Atomic orbital electron populations 1.21663 0.95450 1.01348 1.01040 1.21284 0.95969 0.97243 0.99992 1.21928 0.97443 0.95564 0.99123 1.20569 0.92703 0.84872 0.95798 1.44208 1.75121 1.10017 1.02628 1.19585 1.23551 1.10327 0.83814 0.90930 1.25467 0.99004 1.00295 0.99967 1.70271 1.32487 1.28010 1.25730 0.85447 0.78161 0.76583 0.81270 1.21656 1.22573 1.20468 1.19206 0.89622 0.95096 0.87339 1.21509 0.99171 0.97846 0.92786 1.41913 1.09031 1.36359 1.27351 0.74814 1.20812 0.83804 1.03991 1.02383 1.20317 1.00749 0.98126 0.93909 1.20744 0.99316 1.04394 1.00288 1.19499 0.93219 1.04949 1.01423 1.20001 1.00865 0.96162 0.95131 0.91938 0.94188 0.92671 0.92999 0.94010 0.91754 0.96388 0.98294 0.92394 0.94921 0.91636 0.93480 0.89930 0.89592 0.91162 0.84358 0.94103 0.93021 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.11 -3.99 5.93 30.59 0.18 -3.81 16 3 C -0.10 -4.46 4.87 30.60 0.15 -4.31 16 4 C 0.19 8.88 4.88 86.38 0.42 9.30 16 5 N -0.60 -29.26 2.52 -706.34 -1.78 -31.04 16 6 C -0.24 -12.98 9.70 84.03 0.82 -12.16 16 7 H 0.07 3.82 6.41 -2.91 -0.02 3.80 16 8 C -0.05 -2.90 5.17 84.86 0.44 -2.46 16 9 N -0.92 -50.97 8.06 21.65 0.17 -50.80 16 10 Si 0.95 45.32 29.56 68.60 2.03 47.35 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 14 C 0.21 8.89 5.95 85.64 0.51 9.39 16 15 C 0.00 0.08 6.74 41.08 0.28 0.36 16 16 N -0.55 -17.74 6.07 -171.12 -1.04 -18.78 16 17 H 0.41 11.31 8.96 -92.71 -0.83 10.48 16 18 C 0.00 0.09 7.16 41.08 0.29 0.38 16 19 C -0.07 -1.45 10.42 71.23 0.74 -0.71 16 20 C -0.22 -7.51 10.71 22.14 0.24 -7.27 16 21 C -0.18 -7.09 6.14 -19.99 -0.12 -7.21 16 22 C -0.06 -2.36 9.30 71.24 0.66 -1.69 16 23 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 3.34 6.30 -2.39 -0.02 3.32 16 29 H 0.02 0.74 8.05 -2.39 -0.02 0.72 16 30 H 0.00 -0.05 8.12 -2.39 -0.02 -0.07 16 31 H 0.06 3.20 5.96 -2.39 -0.01 3.18 16 32 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 33 H 0.07 2.73 7.31 -2.39 -0.02 2.71 16 34 H 0.05 1.80 8.02 -2.38 -0.02 1.78 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 40 H 0.05 1.88 7.44 -2.39 -0.02 1.86 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -60.73 328.27 4.86 -55.86 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.16 Total: 21.21 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 5.32 Total: -23.81 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -2.65 Total: -100.62 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -60.73 4.86 -55.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137331182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.521 kcal (2) G-P(sol) polarization free energy of solvation -60.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds