Wall clock time and date at job start Sun Mar 29 2020 23:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.35665 * 126.13017 * 304.50129 * 3 2 1 5 5 N 1.31048 * 114.16556 * 180.02562 * 4 3 2 6 6 C 1.29355 * 117.36157 * 359.97438 * 5 4 3 7 7 C 1.50700 * 124.79356 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47100 * 90.00325 * 7 6 5 9 9 C 1.34778 * 119.99854 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99873 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99743 * 179.97438 * 9 8 7 12 12 C 1.50700 * 109.46989 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99905 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99899 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99922 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46805 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46893 * 120.00090 * 16 14 12 19 19 H 1.48500 * 109.47082 * 239.99870 * 16 14 12 20 20 S 1.70940 * 110.41008 * 0.02562 * 6 5 4 21 21 H 1.08001 * 122.91583 * 359.74541 * 4 3 2 22 22 H 1.09001 * 109.46746 * 209.99773 * 7 6 5 23 23 H 1.08999 * 109.47124 * 330.00168 * 7 6 5 24 24 H 0.96998 * 119.99649 * 359.97438 * 8 7 6 25 25 H 1.09007 * 109.46672 * 299.99874 * 11 9 8 26 26 H 1.08999 * 109.47090 * 59.99631 * 11 9 8 27 27 H 0.97001 * 120.00276 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3682 -0.6197 0.9030 5 7 4.6501 -0.4648 0.6794 6 6 4.9932 0.2417 -0.3484 7 6 6.4146 0.5259 -0.7608 8 7 6.8757 -0.5204 -1.6769 9 6 8.1254 -0.4732 -2.1794 10 8 8.8683 0.4351 -1.8729 11 6 8.5999 -1.5497 -3.1212 12 6 10.0211 -1.2656 -3.5338 13 1 10.5298 -0.3925 -3.1525 14 6 10.6717 -2.1196 -4.3988 15 7 10.0521 -3.1825 -4.8636 16 14 12.4333 -1.7669 -4.9108 17 1 12.8992 -0.5192 -4.2541 18 1 13.3038 -2.8978 -4.5003 19 1 12.4969 -1.6032 -6.3854 20 16 3.6067 0.8075 -1.1726 21 1 2.9822 -1.1878 1.7365 22 1 6.4612 1.4932 -1.2611 23 1 7.0528 0.5425 0.1226 24 1 6.2815 -1.2470 -1.9216 25 1 8.5537 -2.5168 -2.6204 26 1 7.9613 -1.5671 -4.0044 27 1 10.5097 -3.7831 -5.4725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205072.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:09 Heat of formation + Delta-G solvation = 11.382971 kcal Electronic energy + Delta-G solvation = -14547.420651 eV Core-core repulsion = 11817.439104 eV Total energy + Delta-G solvation = -2729.981546 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.13654 -40.28296 -37.84601 -35.94103 -35.04992 -32.43656 -31.03514 -28.99830 -25.99543 -24.74964 -22.61461 -21.46493 -19.88961 -18.59575 -18.49727 -17.65983 -17.04045 -16.38937 -16.23313 -15.85852 -15.68244 -14.73020 -14.59079 -14.52387 -14.31299 -14.16308 -13.95630 -13.78470 -13.07755 -12.74661 -12.53716 -12.50210 -12.01588 -11.38663 -10.92947 -10.72547 -10.59268 -10.56185 -10.08592 -10.05040 -8.21612 -6.28186 -1.03237 -0.22055 0.36273 1.25106 1.43290 1.44901 1.59119 1.68109 1.89602 2.11434 2.37078 2.52214 2.66449 2.96986 3.14496 3.71263 4.11861 4.32702 4.41724 4.67668 4.90752 5.13734 5.31657 5.42340 5.77289 6.08110 6.17709 6.47373 6.66015 6.86853 7.36945 7.49376 8.90447 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.054030 B = 0.003734 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.104712 B = 7497.506274 C = 7681.918783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.311 3.689 3 C -0.204 4.204 4 C 0.127 3.873 5 N -0.477 5.477 6 C 0.035 3.965 7 C 0.193 3.807 8 N -0.724 5.724 9 C 0.527 3.473 10 O -0.576 6.576 11 C 0.007 3.993 12 C -0.534 4.534 13 H 0.058 0.942 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.273 1.273 18 H -0.275 1.275 19 H -0.274 1.274 20 S 0.291 5.709 21 H 0.216 0.784 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.411 0.589 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 6.007 8.643 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.006 4.006 3 C -0.329 4.329 4 C -0.035 4.035 5 N -0.191 5.191 6 C -0.239 4.239 7 C 0.066 3.934 8 N -0.379 5.379 9 C 0.317 3.683 10 O -0.455 6.455 11 C -0.033 4.033 12 C -0.572 4.572 13 H 0.076 0.924 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.201 1.201 19 H -0.200 1.200 20 S 0.549 5.451 21 H 0.232 0.768 22 H 0.120 0.880 23 H 0.110 0.890 24 H 0.247 0.753 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.678 6.968 8.130 18.985 hybrid contribution 0.647 -0.951 0.337 1.198 sum -15.031 6.017 8.467 18.271 Atomic orbital electron populations 1.81365 1.11983 1.09462 1.08348 1.23896 0.90385 0.92964 0.93318 1.21628 0.90264 1.14631 1.06427 1.22633 0.85161 0.96738 0.98989 1.66301 1.18218 1.16625 1.17992 1.27213 1.01430 0.99659 0.95620 1.19793 0.86125 0.92495 0.94950 1.45968 1.14778 1.28777 1.48408 1.21368 0.80268 0.86696 0.80000 1.90541 1.55812 1.37805 1.61362 1.19100 0.96928 0.93078 0.94175 1.21428 0.98546 1.09803 1.27425 0.92380 1.25772 1.02530 0.94728 0.95922 1.70035 1.38857 1.14281 1.33336 0.85422 0.79507 0.78194 0.78075 1.19759 1.20101 1.19973 1.84191 0.94012 1.43699 1.23206 0.76800 0.88018 0.89043 0.75285 0.93943 0.93539 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.43 18.54 19.00 0.35 -9.08 15 2 C 0.31 5.29 15.86 88.33 1.40 6.69 15 3 C -0.20 -2.86 6.35 22.92 0.15 -2.71 15 4 C 0.13 1.73 11.30 84.21 0.95 2.68 15 5 N -0.48 -8.91 10.51 -190.28 -2.00 -10.91 15 6 C 0.03 0.63 6.75 88.47 0.60 1.22 15 7 C 0.19 4.48 6.25 85.63 0.53 5.01 15 8 N -0.72 -21.22 5.55 -466.78 -2.59 -23.81 15 9 C 0.53 22.05 7.82 87.66 0.69 22.73 15 10 O -0.58 -28.05 15.46 -3.02 -0.05 -28.10 15 11 C 0.01 0.33 5.46 29.10 0.16 0.49 15 12 C -0.53 -30.31 8.92 25.60 0.23 -30.08 15 13 H 0.06 3.46 6.75 -2.91 -0.02 3.44 15 14 C 0.01 0.50 5.46 84.65 0.46 0.96 15 15 N -0.92 -52.90 13.29 21.45 0.28 -52.61 15 16 Si 0.96 44.24 29.54 68.60 2.03 46.27 15 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 20 S 0.29 3.93 23.15 -56.49 -1.31 2.62 15 21 H 0.22 1.66 8.06 -2.91 -0.02 1.64 15 22 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.41 10.20 8.46 -92.71 -0.78 9.42 15 25 H 0.04 2.11 8.14 -2.38 -0.02 2.09 15 26 H 0.05 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 Total: -1.00 -68.90 275.68 2.33 -66.57 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 0.44 Total: 2.05 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.17 Total: 7.01 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -3.95 Total: -96.41 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.31 Total: 2.62 kcal Total: -68.90 2.33 -66.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205072.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.950 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds