Wall clock time and date at job start Sun Mar 29 2020 22:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 C 1.53006 * 109.46969 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47011 * 60.00014 * 4 3 2 6 6 N 1.46898 * 109.47043 * 179.97438 * 5 4 3 7 7 C 1.46907 * 110.99865 * 58.95357 * 6 5 4 8 8 C 1.50706 * 109.47157 * 164.61828 * 7 6 5 9 9 H 1.07998 * 119.99753 * 355.08977 * 8 7 6 10 10 C 1.37869 * 120.00092 * 175.09111 * 8 7 6 11 11 N 1.31520 * 119.99712 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00186 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47180 * 90.00002 * 12 10 8 14 14 H 1.48506 * 109.47305 * 209.99833 * 12 10 8 15 15 H 1.48504 * 109.47071 * 329.99829 * 12 10 8 16 16 C 1.46899 * 111.00273 * 295.00159 * 6 5 4 17 17 C 1.52998 * 109.46853 * 284.19166 * 16 6 5 18 18 C 1.47201 * 109.47284 * 185.43572 * 17 16 6 19 19 N 8.00847 * 133.76017 * 327.83524 * 2 1 3 20 20 C 1.53001 * 109.47243 * 299.99818 * 5 4 3 21 21 C 1.52990 * 109.47264 * 60.00078 * 20 5 4 22 22 H 1.09001 * 109.46853 * 60.00721 * 1 2 3 23 23 H 1.09002 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47676 * 300.00015 * 1 2 3 25 25 H 1.09001 * 109.47024 * 119.99806 * 2 1 3 26 26 H 1.09001 * 109.47088 * 299.99767 * 3 2 1 27 27 H 1.08997 * 109.47362 * 59.99836 * 3 2 1 28 28 H 1.09005 * 109.46692 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47262 * 299.99950 * 4 3 2 30 30 H 1.09001 * 109.47675 * 59.99767 * 5 4 3 31 31 H 1.08995 * 109.47228 * 284.61933 * 7 6 5 32 32 H 1.08993 * 109.47295 * 44.61981 * 7 6 5 33 33 H 0.97000 * 119.99809 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.47327 * 44.19626 * 16 6 5 35 35 H 1.08997 * 109.47243 * 164.19680 * 16 6 5 36 36 H 1.08995 * 109.47482 * 305.44101 * 17 16 6 37 37 H 1.09006 * 109.46750 * 65.43985 * 17 16 6 38 38 H 1.09001 * 109.47088 * 300.00099 * 20 5 4 39 39 H 1.08998 * 109.46933 * 180.02562 * 20 5 4 40 40 H 1.08996 * 109.47518 * 180.02562 * 21 20 5 41 41 H 1.09001 * 109.47051 * 59.99998 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0804 0.7211 -1.2482 6 7 5.5494 0.7216 -1.2479 7 6 6.0758 0.0582 -0.0476 8 6 7.5350 -0.2605 -0.2488 9 1 8.0028 -0.0692 -1.2032 10 6 8.2726 -0.7962 0.7855 11 7 7.7030 -1.0286 1.9479 12 14 10.0814 -1.1905 0.5363 13 1 10.9006 -0.0052 0.8959 14 1 10.4620 -2.3361 1.4012 15 1 10.3196 -1.5437 -0.8863 16 6 6.0755 2.0880 -1.3677 17 6 5.9282 2.5661 -2.8136 18 6 6.5717 3.8815 -2.9634 19 7 7.0689 4.8963 -3.0792 20 6 3.5705 -0.7214 -1.2482 21 6 2.0406 -0.7215 -1.2489 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.9332 2.4703 0.0002 29 1 3.9329 0.9288 0.8909 30 1 3.7175 1.2347 -2.1385 31 1 5.9635 0.7193 0.8117 32 1 5.5235 -0.8646 0.1293 33 1 8.2220 -1.4051 2.6757 34 1 5.5175 2.7514 -0.7069 35 1 7.1287 2.0977 -1.0874 36 1 6.4045 1.8503 -3.4834 37 1 4.8702 2.6488 -3.0629 38 1 3.9335 -1.2351 -0.3580 39 1 3.9346 -1.2355 -2.1378 40 1 1.6772 -1.7491 -1.2484 41 1 1.6776 -0.2078 -2.1391 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168221522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:12 Heat of formation + Delta-G solvation = 1.200714 kcal Electronic energy + Delta-G solvation = -18906.859531 eV Core-core repulsion = 16206.608772 eV Total energy + Delta-G solvation = -2700.250759 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.25993 -36.78458 -35.74279 -32.71934 -31.83401 -30.44534 -29.95043 -26.90615 -25.15452 -23.23320 -22.36688 -21.80715 -19.93312 -18.66789 -17.18485 -16.45557 -15.53161 -14.72206 -14.63131 -14.36119 -14.05828 -14.02498 -13.61357 -13.36969 -13.02284 -12.53464 -12.38138 -12.31026 -12.06009 -11.95420 -11.80309 -11.48400 -11.22085 -11.03343 -10.88811 -10.82230 -10.66226 -10.44515 -10.29923 -10.21093 -9.88619 -9.76475 -9.54891 -9.17729 -8.42433 -7.27594 -6.03909 -4.04955 2.99536 3.03539 3.31365 3.38299 3.41859 4.21312 4.43277 4.83641 4.93702 4.96859 5.22701 5.30451 5.35526 5.44502 5.47002 5.59307 5.70458 5.74881 5.79363 5.80515 5.84278 5.89129 5.96994 6.08264 6.10278 6.21349 6.32035 6.39058 6.47627 6.50659 6.57429 6.64146 6.78606 6.85673 7.25836 7.36004 7.78707 7.82384 8.07891 8.13606 8.52083 9.03526 9.59626 11.06247 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.007472 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.232073 B = 3746.623812 C = 5267.738983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.106 4.106 4 C -0.157 4.157 5 C 0.086 3.914 6 N -0.529 5.529 7 C 0.190 3.810 8 C -0.508 4.508 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.893 3.107 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.061 3.939 17 C -0.026 4.026 18 C 0.219 3.781 19 N -0.458 5.458 20 C -0.113 4.113 21 C -0.109 4.109 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.067 0.933 31 H -0.002 1.002 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.511 1.675 -5.501 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.144 4.144 4 C -0.196 4.196 5 C -0.023 4.023 6 N -0.251 5.251 7 C 0.065 3.935 8 C -0.547 4.547 9 H 0.082 0.918 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.721 3.279 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.069 4.069 17 C -0.067 4.067 18 C -0.098 4.098 19 N -0.136 5.136 20 C -0.150 4.150 21 C -0.148 4.148 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.546 2.838 -5.910 13.278 hybrid contribution 0.554 -0.180 0.844 1.026 sum -10.992 2.658 -5.066 12.392 Atomic orbital electron populations 1.21828 0.95921 1.01268 1.01265 1.21162 0.94646 0.96467 0.99047 1.21499 0.95911 0.95985 1.00990 1.22273 0.95155 1.01002 1.01131 1.21683 0.89058 0.95703 0.95869 1.62275 1.04309 1.14712 1.43839 1.19810 0.95176 0.93691 0.84779 1.21197 0.94408 1.41106 0.97962 0.91846 1.24963 0.98456 0.95936 0.95150 1.69950 1.36337 1.44798 1.02684 0.86568 0.85246 0.77876 0.78161 1.20842 1.21339 1.19750 1.21920 1.02637 0.90600 0.91705 1.19410 1.00152 0.85579 1.01523 1.29421 0.93102 0.94780 0.92540 1.81157 1.10171 1.12803 1.09458 1.21614 0.93603 0.96555 1.03267 1.21566 0.96278 0.99697 0.97209 0.93016 0.92995 0.93109 0.91196 0.92525 0.92780 0.92309 0.90989 0.91449 0.98401 0.94539 0.92981 0.94677 0.89086 0.86640 0.88317 0.90917 0.91429 0.92386 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 37.15 0.34 -1.10 16 2 C -0.09 -1.13 2.72 -90.62 -0.25 -1.38 16 3 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 4 C -0.16 -2.33 4.58 -26.73 -0.12 -2.46 16 5 C 0.09 1.30 2.14 -67.72 -0.14 1.15 16 6 N -0.53 -9.66 4.37 -228.09 -1.00 -10.66 16 7 C 0.19 4.44 3.65 -4.97 -0.02 4.42 16 8 C -0.51 -13.34 8.27 -34.44 -0.28 -13.63 16 9 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 10 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 12 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.06 1.01 4.66 -3.83 -0.02 1.00 16 17 C -0.03 -0.33 5.72 -29.52 -0.17 -0.50 16 18 C 0.22 3.24 15.43 -20.76 -0.32 2.92 16 19 N -0.46 -7.90 18.54 42.15 0.78 -7.12 16 20 C -0.11 -1.68 5.05 -26.74 -0.14 -1.82 16 21 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.87 6.24 -51.93 -0.32 0.55 16 29 H 0.07 1.28 6.75 -51.93 -0.35 0.93 16 30 H 0.07 0.89 6.84 -51.93 -0.36 0.54 16 31 H 0.00 -0.05 7.12 -51.93 -0.37 -0.42 16 32 H 0.04 0.91 5.69 -51.93 -0.30 0.62 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.04 0.57 5.88 -51.93 -0.31 0.26 16 35 H 0.09 1.75 7.08 -51.93 -0.37 1.39 16 36 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.10 1.02 7.04 -51.93 -0.37 0.65 16 38 H 0.07 1.28 6.13 -51.93 -0.32 0.96 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -28.64 320.65 -7.98 -36.62 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.82 Total: -1.97 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.49 Total: -12.85 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.52 Total: -42.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.64 -7.98 -36.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168221522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.823 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds