Wall clock time and date at job start Sun Mar 29 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 119.99988 * 2 1 4 4 C 1.38705 * 119.99912 * 180.02562 * 2 1 3 5 5 N 1.32425 * 119.13272 * 359.97438 * 4 2 1 6 6 C 1.32296 * 120.81472 * 179.97438 * 5 4 2 7 7 C 1.39165 * 119.10949 * 0.28444 * 6 5 4 8 8 N 1.40086 * 120.79566 * 179.71838 * 7 6 5 9 9 C 1.46500 * 120.00492 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47034 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.47002 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46986 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00218 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99746 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99939 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99816 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46909 * 60.00123 * 16 14 12 18 18 H 1.48500 * 109.46805 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47278 * 299.99675 * 16 14 12 20 20 C 1.39180 * 118.41773 * 359.43608 * 7 6 5 21 21 N 1.32295 * 119.10482 * 0.55675 * 20 7 6 22 22 H 1.09004 * 109.47597 * 269.99836 * 1 2 3 23 23 H 1.09007 * 109.47229 * 30.00259 * 1 2 3 24 24 H 1.09000 * 109.47482 * 149.99802 * 1 2 3 25 25 H 1.09003 * 109.46838 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47052 * 299.99597 * 3 2 1 27 27 H 1.08997 * 109.47117 * 59.99893 * 3 2 1 28 28 H 1.08002 * 120.44155 * 180.02562 * 6 5 4 29 29 H 0.97005 * 119.99659 * 359.97438 * 8 7 6 30 30 H 1.08996 * 109.46993 * 300.00340 * 9 8 7 31 31 H 1.09004 * 109.46693 * 59.99884 * 9 8 7 32 32 H 1.09004 * 109.47208 * 299.99658 * 10 9 8 33 33 H 1.08990 * 109.47523 * 60.00358 * 10 9 8 34 34 H 1.08996 * 109.46865 * 300.00061 * 11 10 9 35 35 H 1.08998 * 109.46678 * 60.00039 * 11 10 9 36 36 H 0.97000 * 119.99641 * 179.97438 * 15 14 12 37 37 H 1.07994 * 120.44903 * 180.26636 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1585 -1.2012 -0.0005 5 7 1.4790 -2.3379 -0.0005 6 6 2.1066 -3.5025 -0.0015 7 6 3.4981 -3.5218 0.0034 8 7 4.1986 -4.7349 0.0084 9 6 5.6636 -4.7350 0.0130 10 6 6.1735 -6.1775 0.0174 11 6 7.7035 -6.1775 0.0228 12 6 8.2058 -7.5983 0.0264 13 1 7.5040 -8.4192 0.0254 14 6 9.5614 -7.8503 0.0321 15 7 10.4160 -6.8507 0.0339 16 14 10.1839 -9.6115 0.0373 17 1 9.6937 -10.3134 -1.1760 18 1 11.6689 -9.6115 0.0425 19 1 9.6843 -10.3096 1.2490 20 6 4.1774 -2.3070 -0.0028 21 7 3.4825 -1.1812 -0.0019 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 3.2691 1.0695 0.0005 26 1 1.9342 1.8403 -0.8901 27 1 1.9341 1.8403 0.8899 28 1 1.5464 -4.4260 -0.0019 29 1 3.7135 -5.5750 0.0089 30 1 6.0297 -4.2232 -0.8769 31 1 6.0241 -4.2191 0.9030 32 1 5.8074 -6.6896 0.9072 33 1 5.8130 -6.6930 -0.8727 34 1 8.0700 -5.6653 -0.8667 35 1 8.0636 -5.6622 0.9132 36 1 11.3696 -7.0280 0.0383 37 1 5.2570 -2.2837 -0.0035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:32 Heat of formation + Delta-G solvation = 55.414398 kcal Electronic energy + Delta-G solvation = -17232.193329 eV Core-core repulsion = 14430.753109 eV Total energy + Delta-G solvation = -2801.440220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83970 -37.28735 -35.81865 -33.64139 -33.53580 -31.67536 -29.16795 -28.28310 -26.62905 -24.76970 -24.51186 -22.69744 -21.44119 -20.45179 -17.68045 -17.61335 -16.53392 -16.27989 -15.66004 -14.85105 -14.84598 -14.56160 -14.47502 -14.04821 -13.89920 -13.24128 -12.62389 -12.32586 -12.26742 -12.23502 -12.06673 -11.93444 -11.31739 -11.01313 -10.75238 -10.71899 -10.61601 -10.61136 -9.84142 -9.51306 -9.18371 -8.95232 -8.80644 -8.40434 -6.91374 -6.05553 -4.08555 1.22505 1.52545 2.76065 3.30021 3.34865 3.36717 3.63643 4.05837 4.34826 4.41759 4.68051 4.72872 5.08735 5.15818 5.24677 5.28406 5.30475 5.53833 5.58811 5.67492 5.68056 5.75082 5.85806 6.05400 6.16495 6.53889 6.58873 6.85363 6.93420 6.96414 7.26834 7.56156 7.58344 7.70940 7.85589 7.92925 8.34558 8.42192 8.97813 9.55927 11.05723 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.065048 B = 0.003078 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.344893 B = 9093.818759 C = 9487.796992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.606 5.606 3 C 0.102 3.898 4 C 0.502 3.498 5 N -0.531 5.531 6 C 0.110 3.890 7 C 0.071 3.929 8 N -0.735 5.735 9 C 0.120 3.880 10 C -0.119 4.119 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.115 3.885 21 N -0.529 5.529 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.162 0.838 29 H 0.400 0.600 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 11.927 -0.200 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.328 5.328 3 C -0.041 4.041 4 C 0.145 3.855 5 N -0.251 5.251 6 C -0.063 4.063 7 C -0.039 4.039 8 N -0.366 5.366 9 C -0.003 4.003 10 C -0.157 4.157 11 C -0.013 4.013 12 C -0.562 4.562 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.057 4.057 21 N -0.250 5.250 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.179 0.821 29 H 0.234 0.766 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.663 13.021 -0.199 21.945 hybrid contribution 0.755 -2.094 0.031 2.227 sum -16.907 10.927 -0.167 20.132 Atomic orbital electron populations 1.21454 0.78311 1.02519 1.01039 1.45546 1.05094 1.01592 1.80569 1.21572 0.98871 0.83542 1.00116 1.18963 0.85175 0.86094 0.95256 1.67637 1.40611 0.97504 1.19355 1.22385 0.89676 0.95545 0.98652 1.19437 0.93437 0.89334 1.01710 1.44739 1.06160 1.03809 1.81898 1.21632 0.77829 1.00244 1.00602 1.21835 1.00626 0.92291 1.00975 1.19024 0.87396 0.97352 0.97530 1.21168 0.91616 0.92345 1.51079 0.92710 1.25023 0.97063 0.97108 0.95211 1.69947 1.02161 1.30751 1.50490 0.86641 0.77648 0.84988 0.78628 1.20227 1.21247 1.20224 1.22543 1.00201 0.85309 0.97678 1.67639 1.06982 1.31219 1.19120 0.93768 0.91960 0.90573 0.89078 0.93162 0.93210 0.82102 0.76562 0.92535 0.92534 0.92715 0.92706 0.96330 0.96329 0.92844 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.02 10.49 59.85 0.63 1.65 16 2 N -0.61 -7.31 3.38 -191.83 -0.65 -7.95 16 3 C 0.10 0.98 10.71 59.85 0.64 1.62 16 4 C 0.50 7.31 8.18 -322.55 -2.64 4.67 16 5 N -0.53 -7.52 9.11 -13.74 -0.13 -7.65 16 6 C 0.11 1.41 11.19 -17.01 -0.19 1.22 16 7 C 0.07 0.96 6.70 -83.39 -0.56 0.40 16 8 N -0.74 -9.74 5.76 -58.38 -0.34 -10.08 16 9 C 0.12 1.87 4.96 -4.04 -0.02 1.85 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.12 1.65 10.59 -17.00 -0.18 1.47 16 21 N -0.53 -7.92 8.84 -13.74 -0.12 -8.04 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 24 H 0.08 0.76 7.33 -51.93 -0.38 0.38 16 25 H 0.09 0.99 6.76 -51.93 -0.35 0.64 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.40 4.66 8.51 -40.82 -0.35 4.31 16 30 H 0.06 0.88 7.99 -51.93 -0.42 0.47 16 31 H 0.06 0.88 8.01 -51.93 -0.42 0.47 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.17 2.18 6.90 -52.49 -0.36 1.82 16 LS Contribution 313.54 15.07 4.73 4.73 Total: -1.00 -31.23 313.54 -9.42 -40.65 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.62 Total: -0.04 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.01 Total: -2.21 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.49 Total: -59.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.23 -9.42 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.059 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds