Wall clock time and date at job start Sun Mar 29 2020 23:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48503 * 109.47437 * 270.00324 * 3 2 1 5 5 H 1.48502 * 109.47425 * 30.00270 * 3 2 1 6 6 H 1.48504 * 109.47256 * 150.00194 * 3 2 1 7 7 C 1.37878 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00143 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00016 * 179.97438 * 7 2 1 10 10 O 1.42894 * 113.25658 * 312.94905 * 9 7 2 11 11 C 1.53514 * 114.17022 * 179.97438 * 9 7 2 12 12 N 1.47482 * 87.93039 * 220.13955 * 11 9 7 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 9 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 C 1.31336 * 119.99611 * 124.99531 * 14 13 12 16 16 Cl 1.73593 * 120.00213 * 0.02562 * 15 14 13 17 17 Cl 1.73600 * 119.99399 * 179.97438 * 15 14 13 18 18 C 1.47480 * 87.83699 * 27.01095 * 12 11 9 19 19 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 20 20 H 0.96709 * 114.00212 * 47.04691 * 10 9 7 21 21 H 1.08994 * 113.47382 * 105.36798 * 11 9 7 22 22 H 1.09001 * 113.53015 * 334.91209 * 11 9 7 23 23 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 24 24 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 25 25 H 1.07995 * 119.99948 * 304.99977 * 14 13 12 26 26 H 1.08999 * 113.47664 * 87.75895 * 18 12 11 27 27 H 1.08994 * 113.47488 * 218.22090 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 4.0754 -0.2993 -0.9621 11 6 4.1401 -2.5946 -0.0010 12 7 5.1466 -2.0845 0.9486 13 6 5.4215 -3.0689 2.0037 14 6 6.6176 -2.6249 2.8057 15 6 6.5235 -2.4981 4.1096 16 17 5.0216 -2.8425 4.9091 17 17 7.9015 -1.9873 5.0335 18 6 4.1449 -1.0980 1.3940 19 1 -0.4850 0.8400 0.0004 20 1 3.6776 0.5822 -0.9597 21 1 4.5592 -2.8824 -0.9651 22 1 3.4927 -3.3621 0.4231 23 1 5.6273 -4.0389 1.5510 24 1 4.5544 -3.1506 2.6592 25 1 7.5520 -2.4110 2.3084 26 1 3.4981 -1.4654 2.1907 27 1 4.5681 -0.1176 1.6122 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169631180.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:48 Heat of formation + Delta-G solvation = 9.048676 kcal Electronic energy + Delta-G solvation = -14462.661357 eV Core-core repulsion = 11695.809281 eV Total energy + Delta-G solvation = -2766.852076 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64994 -37.42182 -36.54805 -35.28691 -33.20956 -32.45361 -28.61100 -25.88001 -25.26037 -22.47620 -20.19400 -19.15159 -17.42541 -16.69873 -16.21551 -15.46113 -15.07607 -14.39642 -13.68179 -13.52014 -13.17337 -12.80255 -12.40468 -12.15819 -11.90629 -11.57187 -11.49174 -11.22001 -10.93870 -10.91490 -10.49801 -10.45736 -9.99709 -9.38491 -9.04929 -8.87353 -8.58252 -8.21790 -6.36054 -4.40516 1.31718 1.55189 2.43137 3.05215 3.13519 3.20862 4.10475 4.56379 4.80257 5.05242 5.20517 5.41279 5.49875 5.66225 5.82661 5.86376 6.05239 6.16042 6.41732 6.59781 6.80828 6.83262 7.27903 7.63473 8.09675 8.64777 8.66274 9.23148 10.76443 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.006139 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.212594 B = 4559.940537 C = 4633.344535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.078 3.922 3 Si 0.860 3.140 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.087 0.913 9 C 0.203 3.797 10 O -0.548 6.548 11 C 0.019 3.981 12 N -0.467 5.467 13 C 0.031 3.969 14 C -0.079 4.079 15 C -0.059 4.059 16 Cl -0.040 7.040 17 Cl -0.051 7.051 18 C -0.033 4.033 19 H 0.270 0.730 20 H 0.348 0.652 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.147 0.853 26 H 0.075 0.925 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 -4.459 7.871 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.127 4.127 3 Si 0.689 3.311 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.105 0.895 9 C 0.162 3.838 10 O -0.359 6.359 11 C -0.109 4.109 12 N -0.189 5.189 13 C -0.097 4.097 14 C -0.099 4.099 15 C -0.113 4.113 16 Cl -0.013 7.013 17 Cl -0.023 7.023 18 C -0.162 4.162 19 H 0.080 0.920 20 H 0.200 0.800 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.164 0.836 26 H 0.093 0.907 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.652 -4.659 7.685 15.519 hybrid contribution -0.657 1.095 0.788 1.501 sum 11.995 -3.565 8.473 15.112 Atomic orbital electron populations 1.69861 1.06110 1.27531 1.48194 1.25005 0.94910 0.99107 0.93631 0.87299 0.80557 0.84168 0.79114 1.19366 1.21245 1.17906 1.21299 0.88170 0.95424 1.52375 0.89489 1.20053 0.91919 0.87329 0.84453 1.86456 1.64434 1.24698 1.60309 1.23941 0.92265 0.97849 0.96880 1.68890 1.31580 1.09013 1.09454 1.22015 0.95111 0.97412 0.95174 1.23226 1.01603 0.94371 0.90730 1.24012 0.85112 1.10602 0.91535 1.98407 1.28921 1.93423 1.80507 1.98397 1.39352 1.89515 1.75022 1.25066 0.92846 0.96742 1.01578 0.92030 0.79968 0.90196 0.90670 0.89211 0.91504 0.83559 0.90691 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 13.96 55.43 0.77 -24.68 15 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 15 3 Si 0.86 19.93 24.41 -169.99 -4.15 15.78 15 4 H -0.27 -5.98 7.06 56.52 0.40 -5.58 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.25 -5.66 5.46 56.52 0.31 -5.35 15 7 C -0.53 -14.36 9.28 -34.44 -0.32 -14.68 15 8 H 0.09 2.49 8.06 -52.49 -0.42 2.06 15 9 C 0.20 4.78 1.09 -91.24 -0.10 4.68 15 10 O -0.55 -13.37 13.32 -35.23 -0.47 -13.84 15 11 C 0.02 0.38 7.09 -7.54 -0.05 0.33 15 12 N -0.47 -8.72 6.32 -246.06 -1.55 -10.27 15 13 C 0.03 0.47 5.11 -4.97 -0.03 0.44 15 14 C -0.08 -1.05 9.58 -36.11 -0.35 -1.40 15 15 C -0.06 -0.77 6.97 28.93 0.20 -0.57 15 16 Cl -0.04 -0.54 26.92 -51.86 -1.40 -1.94 15 17 Cl -0.05 -0.60 29.06 -51.86 -1.51 -2.11 15 18 C -0.03 -0.70 6.54 -7.54 -0.05 -0.74 15 19 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 20 H 0.35 8.21 3.17 45.56 0.14 8.35 15 21 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 22 H 0.08 1.41 7.87 -51.93 -0.41 1.00 15 23 H 0.09 1.18 8.08 -51.93 -0.42 0.76 15 24 H 0.07 1.03 5.17 -51.93 -0.27 0.76 15 25 H 0.15 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.07 1.56 7.38 -51.93 -0.38 1.18 15 27 H 0.07 1.51 7.11 -51.93 -0.37 1.14 15 LS Contribution 256.09 15.07 3.86 3.86 Total: -1.00 -28.14 256.09 -7.43 -35.57 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.20 Total: 7.53 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.79 Total: -9.90 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: -0.78 Total: -34.95 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.47 Total: -13.84 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.15 Total: 15.78 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -2.90 Total: -4.05 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.14 -7.43 -35.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169631180.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.622 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds