Wall clock time and date at job start Sun Mar 29 2020 23:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48503 * 109.47437 * 270.00324 * 3 2 1 5 5 H 1.48502 * 109.47425 * 30.00270 * 3 2 1 6 6 H 1.48504 * 109.47256 * 150.00194 * 3 2 1 7 7 C 1.37878 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00143 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00016 * 179.97438 * 7 2 1 10 10 O 1.42894 * 113.25658 * 312.94905 * 9 7 2 11 11 C 1.53514 * 114.17022 * 179.97438 * 9 7 2 12 12 N 1.47482 * 87.93039 * 220.13955 * 11 9 7 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 9 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 C 1.31336 * 119.99611 * 124.99531 * 14 13 12 16 16 Cl 1.73593 * 120.00213 * 0.02562 * 15 14 13 17 17 Cl 1.73600 * 119.99399 * 179.97438 * 15 14 13 18 18 C 1.47480 * 87.83699 * 27.01095 * 12 11 9 19 19 H 0.96996 * 120.00423 * 359.97438 * 1 2 3 20 20 H 0.96709 * 114.00212 * 47.04691 * 10 9 7 21 21 H 1.08994 * 113.47382 * 105.36798 * 11 9 7 22 22 H 1.09001 * 113.53015 * 334.91209 * 11 9 7 23 23 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 24 24 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 25 25 H 1.07995 * 119.99948 * 304.99977 * 14 13 12 26 26 H 1.08999 * 113.47664 * 87.75895 * 18 12 11 27 27 H 1.08994 * 113.47488 * 218.22090 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 4.0754 -0.2993 -0.9621 11 6 4.1401 -2.5946 -0.0010 12 7 5.1466 -2.0845 0.9486 13 6 5.4215 -3.0689 2.0037 14 6 6.6176 -2.6249 2.8057 15 6 6.5235 -2.4981 4.1096 16 17 5.0216 -2.8425 4.9091 17 17 7.9015 -1.9873 5.0335 18 6 4.1449 -1.0980 1.3940 19 1 -0.4850 0.8400 0.0004 20 1 3.6776 0.5822 -0.9597 21 1 4.5592 -2.8824 -0.9651 22 1 3.4927 -3.3621 0.4231 23 1 5.6273 -4.0389 1.5510 24 1 4.5544 -3.1506 2.6592 25 1 7.5520 -2.4110 2.3084 26 1 3.4981 -1.4654 2.1907 27 1 4.5681 -0.1176 1.6122 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169631180.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:47 Heat of formation + Delta-G solvation = -12.836272 kcal Electronic energy + Delta-G solvation = -14463.610360 eV Core-core repulsion = 11695.809281 eV Total energy + Delta-G solvation = -2767.801079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.26607 -38.48309 -37.55954 -36.94163 -34.56043 -34.44201 -30.19738 -27.60524 -26.89413 -24.04093 -21.31277 -20.88101 -19.37463 -18.19836 -17.77162 -16.84435 -16.53277 -15.90392 -15.30734 -15.06430 -14.68619 -14.48552 -13.96461 -13.79795 -13.33820 -12.86872 -12.71644 -12.49432 -12.43773 -12.25380 -12.14449 -11.94818 -11.82132 -11.14064 -10.98587 -10.44304 -9.99981 -9.80262 -8.44682 -6.54206 0.30307 0.51210 1.21417 1.28538 1.36969 1.40522 2.15869 2.78217 3.06999 3.53741 3.80794 3.99909 4.16136 4.25429 4.32423 4.55808 4.74788 4.81898 4.90795 4.96340 5.10038 5.29625 5.33441 6.01122 6.12716 6.51067 6.75968 7.13548 8.71151 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.006139 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.212594 B = 4559.940537 C = 4633.344535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.025 3.975 3 Si 0.919 3.081 4 H -0.252 1.252 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.182 3.818 10 O -0.553 6.553 11 C 0.026 3.974 12 N -0.461 5.461 13 C 0.031 3.969 14 C -0.081 4.081 15 C -0.058 4.058 16 Cl -0.047 7.047 17 Cl -0.037 7.037 18 C -0.022 4.022 19 H 0.272 0.728 20 H 0.350 0.650 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.112 0.888 24 H 0.063 0.937 25 H 0.162 0.838 26 H 0.072 0.928 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.892 -4.178 8.324 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.176 4.176 3 Si 0.744 3.256 4 H -0.178 1.178 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.142 3.858 10 O -0.365 6.365 11 C -0.103 4.103 12 N -0.183 5.183 13 C -0.098 4.098 14 C -0.101 4.101 15 C -0.112 4.112 16 Cl -0.019 7.019 17 Cl -0.009 7.009 18 C -0.152 4.152 19 H 0.082 0.918 20 H 0.202 0.798 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.130 0.870 24 H 0.081 0.919 25 H 0.179 0.821 26 H 0.090 0.910 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.761 -4.395 8.139 17.420 hybrid contribution -1.312 0.906 0.673 1.730 sum 13.450 -3.490 8.812 16.454 Atomic orbital electron populations 1.69997 1.07901 1.28649 1.49988 1.25818 0.95633 1.02896 0.93238 0.86321 0.79750 0.79488 0.80048 1.17789 1.21063 1.16285 1.21504 0.90353 0.94274 1.51977 0.92861 1.20219 0.90087 0.89585 0.85949 1.86450 1.64241 1.24941 1.60823 1.23875 0.92472 0.95978 0.97927 1.68808 1.30023 1.09369 1.10145 1.22058 0.95771 0.97519 0.94404 1.23182 1.01505 0.94774 0.90644 1.24085 0.85249 1.10104 0.91725 1.98412 1.29467 1.93438 1.80619 1.98405 1.38488 1.89299 1.74682 1.24823 0.93176 0.97529 0.99663 0.91846 0.79808 0.89352 0.89910 0.86976 0.91900 0.82083 0.90968 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.96 21.45 0.30 -54.46 15 2 C 0.02 1.35 5.47 84.66 0.46 1.82 15 3 Si 0.92 40.61 24.41 68.60 1.67 42.29 15 4 H -0.25 -10.51 7.06 99.48 0.70 -9.81 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 6 H -0.24 -9.88 5.46 99.48 0.54 -9.34 15 7 C -0.54 -29.54 9.28 25.60 0.24 -29.30 15 8 H 0.05 3.16 8.06 -2.91 -0.02 3.14 15 9 C 0.18 8.38 1.09 -11.19 -0.01 8.37 15 10 O -0.55 -25.99 13.32 -148.98 -1.98 -27.97 15 11 C 0.03 0.99 7.09 83.58 0.59 1.58 15 12 N -0.46 -16.08 6.32 -932.80 -5.89 -21.97 15 13 C 0.03 0.83 5.11 85.56 0.44 1.27 15 14 C -0.08 -1.92 9.58 25.32 0.24 -1.68 15 15 C -0.06 -1.37 6.97 67.45 0.47 -0.90 15 16 Cl -0.05 -1.19 26.92 -2.72 -0.07 -1.26 15 17 Cl -0.04 -0.78 29.06 -2.72 -0.08 -0.86 15 18 C -0.02 -0.90 6.54 83.58 0.55 -0.35 15 19 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 20 H 0.35 15.72 3.17 -74.05 -0.24 15.49 15 21 H 0.09 3.22 8.14 -2.39 -0.02 3.21 15 22 H 0.08 3.00 7.87 -2.39 -0.02 2.98 15 23 H 0.11 2.58 8.08 -2.39 -0.02 2.56 15 24 H 0.06 1.81 5.17 -2.39 -0.01 1.79 15 25 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 26 H 0.07 2.93 7.38 -2.39 -0.02 2.92 15 27 H 0.07 2.76 7.11 -2.39 -0.02 2.75 15 Total: -1.00 -59.61 256.09 -2.28 -61.89 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.80 Total: 21.53 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 2.98 Total: -19.19 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -5.59 Total: -76.43 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.98 Total: -27.97 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.67 Total: 42.29 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.15 Total: -2.12 kcal Total: -59.61 -2.28 -61.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169631180.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.054 kcal (2) G-P(sol) polarization free energy of solvation -59.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds