Wall clock time and date at job start Sun Mar 29 2020 23:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52998 * 109.46986 * 119.99997 * 2 1 3 5 5 C 1.53001 * 109.47171 * 184.99902 * 4 2 1 6 6 C 1.50699 * 109.47432 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99918 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00027 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00241 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47032 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47531 * 119.99499 * 10 8 6 13 13 H 1.48498 * 109.47153 * 240.00091 * 10 8 6 14 14 N 1.46901 * 109.47130 * 239.99792 * 2 1 3 15 15 C 1.46907 * 110.99980 * 84.99962 * 14 2 1 16 16 C 1.52997 * 109.46912 * 179.97438 * 15 14 2 17 17 C 1.47202 * 110.53854 * 57.39090 * 16 15 14 18 18 N 4.86125 * 84.53217 * 237.76285 * 2 1 3 19 19 C 1.54897 * 110.48397 * 180.02562 * 16 15 14 20 20 C 1.54882 * 102.74839 * 156.62024 * 19 16 15 21 21 C 1.54268 * 104.19992 * 322.05790 * 20 19 16 22 22 C 1.53876 * 106.59607 * 23.60931 * 21 20 19 23 23 H 1.09002 * 109.47218 * 300.00298 * 1 2 3 24 24 H 1.09002 * 109.46956 * 60.00038 * 1 2 3 25 25 H 1.08999 * 109.47601 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47094 * 304.99875 * 4 2 1 27 27 H 1.08998 * 109.47596 * 65.00395 * 4 2 1 28 28 H 1.09001 * 109.47089 * 299.99976 * 5 4 2 29 29 H 1.09001 * 109.47184 * 59.99790 * 5 4 2 30 30 H 0.97006 * 119.99976 * 180.02562 * 9 8 6 31 31 H 1.00900 * 110.99925 * 321.05276 * 14 2 1 32 32 H 1.09000 * 109.46751 * 59.99718 * 15 14 2 33 33 H 1.09001 * 109.47127 * 300.00453 * 15 14 2 34 34 H 1.08994 * 110.75328 * 274.93857 * 19 16 15 35 35 H 1.09004 * 110.75215 * 38.30565 * 19 16 15 36 36 H 1.09003 * 110.48391 * 80.73538 * 20 19 16 37 37 H 1.09004 * 110.48801 * 203.38079 * 20 19 16 38 38 H 1.08994 * 110.03288 * 264.32894 * 21 20 19 39 39 H 1.08998 * 110.03249 * 142.88896 * 21 20 19 40 40 H 1.08998 * 110.03805 * 240.71854 * 22 21 20 41 41 H 1.09002 * 110.03703 * 119.28069 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5647 -0.6133 1.3137 6 6 4.0671 -1.3232 2.5445 7 1 3.3685 -1.8029 3.2140 8 6 5.4183 -1.3593 2.8164 9 7 6.2688 -0.7746 2.0013 10 14 6.0410 -2.2398 4.3416 11 1 4.8910 -2.8113 5.0874 12 1 6.9635 -3.3321 3.9406 13 1 6.7632 -1.2754 5.2097 14 7 2.0196 -0.6925 -1.1994 15 6 2.0824 0.2225 -2.3470 16 6 2.5962 -0.5330 -3.5742 17 6 1.7337 -1.6893 -3.8672 18 7 1.0667 -2.5813 -4.0932 19 6 2.6723 0.4115 -4.7995 20 6 3.7237 -0.2822 -5.7008 21 6 4.7708 -0.8292 -4.7088 22 6 4.0539 -0.9886 -3.3566 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0729 0.4260 29 1 3.8531 0.4369 1.3573 30 1 7.2196 -0.8003 2.1924 31 1 1.4494 -1.4979 -1.4100 32 1 2.7588 1.0461 -2.1182 33 1 1.0870 0.6163 -2.5526 34 1 1.7079 0.4680 -5.3041 35 1 3.0126 1.4034 -4.5021 36 1 3.2669 -1.0977 -6.2615 37 1 4.1806 0.4390 -6.3785 38 1 5.5973 -0.1252 -4.6124 39 1 5.1407 -1.7955 -5.0514 40 1 4.5325 -0.3620 -2.6040 41 1 4.0759 -2.0323 -3.0430 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:36 Heat of formation + Delta-G solvation = -6.271417 kcal Electronic energy + Delta-G solvation = -18532.069252 eV Core-core repulsion = 15831.494477 eV Total energy + Delta-G solvation = -2700.574775 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50782 -36.83790 -35.69969 -33.31615 -31.94147 -29.61840 -28.88669 -28.16722 -25.11963 -23.63871 -22.20188 -21.29649 -20.42468 -19.76823 -16.95128 -16.12644 -15.67909 -15.37974 -14.91452 -14.43319 -14.32681 -13.93289 -13.52761 -13.04511 -12.98230 -12.76530 -12.65532 -12.35406 -12.11126 -11.76981 -11.50613 -11.32012 -11.20008 -11.16480 -11.11813 -10.96254 -10.80642 -10.75577 -10.42034 -10.40820 -10.12775 -9.62494 -9.20746 -8.88223 -8.22820 -7.94202 -5.88177 -3.88450 2.79340 2.81370 3.36881 3.44421 3.48626 3.88459 4.23625 4.49378 4.55179 4.63389 4.85810 5.09303 5.29198 5.35545 5.40765 5.47861 5.49804 5.51912 5.57982 5.64828 5.67429 5.74966 5.82644 5.88161 5.97662 6.08111 6.15077 6.27127 6.37235 6.39788 6.45440 6.66524 6.89337 7.29840 7.43912 7.58905 7.72099 7.86116 8.08957 8.23694 8.59192 9.20387 9.74182 11.22883 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.005396 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.482877 B = 5188.263155 C = 5977.504552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.075 0.925 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.670 5.670 15 C 0.075 3.925 16 C 0.031 3.969 17 C 0.227 3.773 18 N -0.444 5.444 19 C -0.108 4.108 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.099 4.099 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.007 0.993 30 H 0.257 0.743 31 H 0.333 0.667 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 5.140 -13.830 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.555 4.555 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.301 5.301 15 C -0.056 4.056 16 C 0.027 3.973 17 C -0.091 4.091 18 N -0.119 5.119 19 C -0.147 4.147 20 C -0.164 4.164 21 C -0.166 4.166 22 C -0.138 4.138 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.697 3.884 -14.019 16.014 hybrid contribution -0.325 -0.167 0.778 0.859 sum -7.022 3.717 -13.241 15.442 Atomic orbital electron populations 1.22547 0.98668 1.01554 1.01309 1.21742 0.90880 0.98436 0.91386 0.90634 1.21637 1.00709 0.98376 0.92987 1.19000 0.88181 0.96488 0.97052 1.21393 0.91846 1.33884 1.08414 0.93145 1.24972 0.97138 0.95778 0.96460 1.69979 1.02064 1.44538 1.36878 0.86653 0.78826 0.79560 0.83628 1.19926 1.21150 1.21195 1.60573 1.57740 1.08818 1.02921 1.22046 0.99576 0.95447 0.88523 1.19230 0.93600 0.88002 0.96481 1.29013 0.93246 0.94170 0.92680 1.81208 1.10541 1.10952 1.09178 1.22593 0.99807 0.98531 0.93762 1.22399 0.96449 0.99831 0.97735 1.22225 0.98290 1.01321 0.94798 1.22150 0.90406 1.03493 0.97732 0.92098 0.93752 0.92925 0.93481 0.93578 0.94794 0.97420 0.93351 0.84943 0.88666 0.95083 0.91134 0.89065 0.91981 0.91059 0.91057 0.91851 0.88477 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.16 37.15 0.34 -2.11 16 2 C 0.08 1.36 2.59 -67.72 -0.18 1.18 16 3 H 0.08 1.21 7.80 -51.93 -0.40 0.80 16 4 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.88 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 N -0.67 -10.23 5.44 -106.72 -0.58 -10.81 16 15 C 0.07 0.89 4.35 -3.82 -0.02 0.88 16 16 C 0.03 0.34 0.64 -155.63 -0.10 0.25 16 17 C 0.23 3.07 12.34 -20.74 -0.26 2.82 16 18 N -0.44 -7.01 18.54 42.17 0.78 -6.23 16 19 C -0.11 -0.91 5.79 -24.74 -0.14 -1.06 16 20 C -0.13 -1.08 6.59 -25.07 -0.17 -1.24 16 21 C -0.13 -1.27 6.80 -25.61 -0.17 -1.45 16 22 C -0.10 -1.21 5.69 -25.61 -0.15 -1.35 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 25 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.33 5.16 7.33 -39.29 -0.29 4.87 16 32 H 0.10 1.10 7.99 -51.93 -0.41 0.68 16 33 H 0.03 0.34 7.44 -51.93 -0.39 -0.05 16 34 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 35 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.31 7.79 -51.93 -0.40 0.90 16 41 H 0.07 1.03 7.83 -51.93 -0.41 0.63 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -31.02 333.13 -7.85 -38.87 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.28 Total: -0.52 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.51 Total: -17.14 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.94 Total: -43.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.02 -7.85 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.597 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds