Wall clock time and date at job start Sun Mar 29 2020 23:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52998 * 109.46986 * 119.99997 * 2 1 3 5 5 C 1.53001 * 109.47171 * 184.99902 * 4 2 1 6 6 C 1.50699 * 109.47432 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99918 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00027 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00241 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47032 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47531 * 119.99499 * 10 8 6 13 13 H 1.48498 * 109.47153 * 240.00091 * 10 8 6 14 14 N 1.46901 * 109.47130 * 239.99792 * 2 1 3 15 15 C 1.46907 * 110.99980 * 84.99962 * 14 2 1 16 16 C 1.52997 * 109.46912 * 179.97438 * 15 14 2 17 17 C 1.47202 * 110.53854 * 57.39090 * 16 15 14 18 18 N 4.86125 * 84.53217 * 237.76285 * 2 1 3 19 19 C 1.54897 * 110.48397 * 180.02562 * 16 15 14 20 20 C 1.54882 * 102.74839 * 156.62024 * 19 16 15 21 21 C 1.54268 * 104.19992 * 322.05790 * 20 19 16 22 22 C 1.53876 * 106.59607 * 23.60931 * 21 20 19 23 23 H 1.09002 * 109.47218 * 300.00298 * 1 2 3 24 24 H 1.09002 * 109.46956 * 60.00038 * 1 2 3 25 25 H 1.08999 * 109.47601 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47094 * 304.99875 * 4 2 1 27 27 H 1.08998 * 109.47596 * 65.00395 * 4 2 1 28 28 H 1.09001 * 109.47089 * 299.99976 * 5 4 2 29 29 H 1.09001 * 109.47184 * 59.99790 * 5 4 2 30 30 H 0.97006 * 119.99976 * 180.02562 * 9 8 6 31 31 H 1.00900 * 110.99925 * 321.05276 * 14 2 1 32 32 H 1.09000 * 109.46751 * 59.99718 * 15 14 2 33 33 H 1.09001 * 109.47127 * 300.00453 * 15 14 2 34 34 H 1.08994 * 110.75328 * 274.93857 * 19 16 15 35 35 H 1.09004 * 110.75215 * 38.30565 * 19 16 15 36 36 H 1.09003 * 110.48391 * 80.73538 * 20 19 16 37 37 H 1.09004 * 110.48801 * 203.38079 * 20 19 16 38 38 H 1.08994 * 110.03288 * 264.32894 * 21 20 19 39 39 H 1.08998 * 110.03249 * 142.88896 * 21 20 19 40 40 H 1.08998 * 110.03805 * 240.71854 * 22 21 20 41 41 H 1.09002 * 110.03703 * 119.28069 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5647 -0.6133 1.3137 6 6 4.0671 -1.3232 2.5445 7 1 3.3685 -1.8029 3.2140 8 6 5.4183 -1.3593 2.8164 9 7 6.2688 -0.7746 2.0013 10 14 6.0410 -2.2398 4.3416 11 1 4.8910 -2.8113 5.0874 12 1 6.9635 -3.3321 3.9406 13 1 6.7632 -1.2754 5.2097 14 7 2.0196 -0.6925 -1.1994 15 6 2.0824 0.2225 -2.3470 16 6 2.5962 -0.5330 -3.5742 17 6 1.7337 -1.6893 -3.8672 18 7 1.0667 -2.5813 -4.0932 19 6 2.6723 0.4115 -4.7995 20 6 3.7237 -0.2822 -5.7008 21 6 4.7708 -0.8292 -4.7088 22 6 4.0539 -0.9886 -3.3566 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -0.2617 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 3.9994 -1.0729 0.4260 29 1 3.8531 0.4369 1.3573 30 1 7.2196 -0.8003 2.1924 31 1 1.4494 -1.4979 -1.4100 32 1 2.7588 1.0461 -2.1182 33 1 1.0870 0.6163 -2.5526 34 1 1.7079 0.4680 -5.3041 35 1 3.0126 1.4034 -4.5021 36 1 3.2669 -1.0977 -6.2615 37 1 4.1806 0.4390 -6.3785 38 1 5.5973 -0.1252 -4.6124 39 1 5.1407 -1.7955 -5.0514 40 1 4.5325 -0.3620 -2.6040 41 1 4.0759 -2.0323 -3.0430 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:36 Heat of formation + Delta-G solvation = -24.335251 kcal Electronic energy + Delta-G solvation = -18532.852559 eV Core-core repulsion = 15831.494477 eV Total energy + Delta-G solvation = -2701.358081 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46216 -38.11397 -36.79067 -35.25652 -33.39251 -31.21837 -29.76144 -29.23302 -26.97715 -24.75227 -23.18163 -22.98885 -21.31761 -21.18690 -18.33836 -17.89824 -16.73733 -16.49740 -16.40003 -15.96832 -15.39683 -14.94166 -14.72066 -14.46967 -14.21790 -14.13008 -13.91568 -13.63935 -13.54470 -13.11927 -12.88552 -12.80952 -12.72444 -12.31126 -12.09287 -12.04447 -12.02944 -11.94929 -11.73957 -11.51319 -11.48179 -11.24855 -11.15636 -10.89999 -10.43790 -9.13106 -8.10342 -6.18981 1.40751 1.41649 1.53811 1.72013 1.72720 2.45967 2.88188 3.18629 3.22339 3.67138 3.74026 3.92606 4.08899 4.28917 4.31347 4.47298 4.49888 4.59767 4.66772 4.76050 4.80244 4.82905 4.85565 5.01180 5.01670 5.09497 5.12100 5.15176 5.23486 5.30873 5.34567 5.44895 5.50163 5.53249 5.63821 5.95093 6.08944 6.27308 6.40184 6.45977 6.57509 7.00450 7.48293 9.00646 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021040 B = 0.005396 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.482877 B = 5188.263155 C = 5977.504552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.078 0.922 4 C -0.090 4.090 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.049 0.951 8 C 0.004 3.996 9 N -0.927 5.927 10 Si 0.954 3.046 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.277 1.277 14 N -0.691 5.691 15 C 0.076 3.924 16 C 0.034 3.966 17 C 0.244 3.756 18 N -0.486 5.486 19 C -0.100 4.100 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.099 4.099 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.009 0.991 29 H -0.015 1.015 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 6.174 -14.309 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 H 0.096 0.904 4 C -0.128 4.128 5 C 0.003 3.997 6 C -0.581 4.581 7 H 0.067 0.933 8 C -0.194 4.194 9 N -0.568 5.568 10 Si 0.779 3.221 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.203 1.203 14 N -0.322 5.322 15 C -0.054 4.054 16 C 0.030 3.970 17 C -0.073 4.073 18 N -0.161 5.161 19 C -0.139 4.139 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.138 4.138 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.318 4.923 -14.504 16.975 hybrid contribution -0.077 -0.497 0.941 1.067 sum -7.394 4.426 -13.563 16.069 Atomic orbital electron populations 1.22414 0.96107 1.01771 1.02734 1.21522 0.92776 0.97609 0.89767 0.90400 1.21475 0.97063 0.98555 0.95746 1.18814 0.91674 0.94224 0.94960 1.21840 0.92406 1.34337 1.09510 0.93287 1.25832 0.97406 0.96492 0.99675 1.70096 1.02461 1.45556 1.38659 0.85572 0.78313 0.78440 0.79743 1.19162 1.20625 1.20288 1.60480 1.58074 1.09620 1.04008 1.22125 1.00950 0.94937 0.87362 1.19374 0.92108 0.87780 0.97747 1.29430 0.92532 0.93910 0.91412 1.81215 1.12021 1.12125 1.10785 1.22659 1.00582 0.98599 0.92030 1.22395 0.95911 1.00121 0.97543 1.22217 0.98903 1.01579 0.93745 1.22087 0.91635 1.01325 0.98763 0.91370 0.91605 0.93311 0.93281 0.94502 0.97209 0.99705 0.93058 0.85323 0.88033 0.92921 0.89877 0.86837 0.92705 0.88704 0.90067 0.92344 0.90115 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.16 71.98 0.66 -3.60 16 2 C 0.09 2.90 2.59 44.91 0.12 3.02 16 3 H 0.08 2.40 7.80 -2.39 -0.02 2.39 16 4 C -0.09 -3.70 4.83 30.59 0.15 -3.56 16 5 C 0.04 2.12 4.86 29.85 0.15 2.27 16 6 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 7 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 10 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 N -0.69 -20.94 5.44 -491.56 -2.68 -23.62 16 15 C 0.08 1.70 4.35 86.30 0.38 2.08 16 16 C 0.03 0.72 0.64 -52.91 -0.03 0.69 16 17 C 0.24 6.49 12.34 89.44 1.10 7.60 16 18 N -0.49 -15.33 18.54 20.01 0.37 -14.95 16 19 C -0.10 -1.41 5.79 31.89 0.18 -1.22 16 20 C -0.12 -1.79 6.59 31.67 0.21 -1.59 16 21 C -0.13 -2.40 6.80 31.32 0.21 -2.19 16 22 C -0.10 -2.45 5.69 31.32 0.18 -2.27 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 1.37 7.45 -2.39 -0.02 1.35 16 25 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.01 0.54 7.75 -2.39 -0.02 0.52 16 29 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 31 H 0.33 10.20 7.33 -89.69 -0.66 9.54 16 32 H 0.10 2.17 7.99 -2.39 -0.02 2.15 16 33 H 0.05 0.98 7.44 -2.39 -0.02 0.96 16 34 H 0.08 1.03 8.03 -2.39 -0.02 1.01 16 35 H 0.11 1.16 8.06 -2.38 -0.02 1.14 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.08 2.25 7.79 -2.39 -0.02 2.23 16 41 H 0.04 1.35 7.83 -2.39 -0.02 1.33 16 Total: -1.00 -67.87 333.13 4.33 -63.54 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.33 Total: 13.46 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.99 Total: -29.42 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -2.02 Total: -94.78 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.87 4.33 -63.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.205 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds