Wall clock time and date at job start Sun Mar 29 2020 23:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47486 * 2 1 4 4 C 1.52998 * 109.47229 * 239.99740 * 2 1 3 5 5 C 1.52997 * 109.47327 * 175.00238 * 4 2 1 6 6 C 1.52994 * 109.47218 * 180.02562 * 5 4 2 7 7 C 1.47209 * 109.46953 * 179.97438 * 6 5 4 8 8 N 5.90998 * 150.50485 * 246.70551 * 2 1 3 9 9 N 1.46903 * 109.46717 * 120.00205 * 2 1 3 10 10 C 1.46894 * 111.00041 * 274.99790 * 9 2 1 11 11 H 1.09002 * 109.41684 * 35.14172 * 10 9 2 12 12 C 1.52961 * 109.41539 * 155.00298 * 10 9 2 13 13 C 1.53226 * 109.40481 * 183.63569 * 12 10 9 14 14 C 1.51268 * 108.53823 * 305.37224 * 13 12 10 15 15 C 1.37884 * 120.85015 * 231.37077 * 14 13 12 16 16 N 1.31514 * 119.99796 * 164.54285 * 15 14 13 17 17 Si 1.86793 * 119.99763 * 344.54533 * 15 14 13 18 18 H 1.48496 * 109.47557 * 354.63728 * 17 15 14 19 19 H 1.48501 * 109.46984 * 114.64056 * 17 15 14 20 20 H 1.48504 * 109.47262 * 234.63229 * 17 15 14 21 21 C 1.51269 * 118.30296 * 51.34618 * 14 13 12 22 22 C 1.53229 * 108.69405 * 308.56304 * 21 14 13 23 23 H 1.09000 * 109.46936 * 60.00051 * 1 2 3 24 24 H 1.08999 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47286 * 299.99767 * 1 2 3 26 26 H 1.09000 * 109.47314 * 295.00201 * 4 2 1 27 27 H 1.09005 * 109.47018 * 55.00238 * 4 2 1 28 28 H 1.09000 * 109.46893 * 300.00220 * 5 4 2 29 29 H 1.09005 * 109.47072 * 60.00033 * 5 4 2 30 30 H 1.09000 * 109.47090 * 299.99759 * 6 5 4 31 31 H 1.09004 * 109.47444 * 60.00410 * 6 5 4 32 32 H 1.00907 * 110.99802 * 151.04791 * 9 2 1 33 33 H 1.08998 * 109.48250 * 63.65349 * 12 10 9 34 34 H 1.08999 * 109.49057 * 303.62225 * 12 10 9 35 35 H 1.08998 * 109.62707 * 185.65836 * 13 12 10 36 36 H 1.09007 * 109.63133 * 65.08754 * 13 12 10 37 37 H 0.97004 * 120.00037 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.62405 * 68.37035 * 21 14 13 39 39 H 1.09000 * 109.62876 * 188.75076 * 21 14 13 40 40 H 1.08998 * 109.48115 * 174.70340 * 22 21 14 41 41 H 1.09005 * 109.47989 * 294.74145 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0747 -1.3341 -2.5631 7 6 5.5418 -1.2298 -2.6254 8 7 6.6740 -1.1507 -2.6726 9 7 2.0196 -0.6926 1.1995 10 6 2.0824 0.2224 2.3469 11 1 1.2558 0.9308 2.2911 12 6 1.9768 -0.5809 3.6443 13 6 1.9509 0.3800 4.8374 14 6 3.1653 1.2785 4.7578 15 6 4.0041 1.4313 5.8413 16 7 5.1988 1.9566 5.6791 17 14 3.4436 0.8920 7.5396 18 1 2.0249 0.4577 7.4781 19 1 4.2877 -0.2382 8.0038 20 1 3.5729 2.0279 8.4875 21 6 3.4361 2.0047 3.4587 22 6 3.4113 0.9876 2.3130 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7516 -1.7716 -1.2055 27 1 1.6054 -0.2618 -2.1370 28 1 3.8532 0.4369 -1.3573 29 1 3.9994 -1.0729 -0.4258 30 1 3.7864 -2.3844 -2.5199 31 1 3.6402 -0.8742 -3.4507 32 1 2.9173 -1.1206 1.0288 33 1 2.8364 -1.2455 3.7313 34 1 1.0606 -1.1713 3.6329 35 1 1.9771 -0.1892 5.7666 36 1 1.0449 0.9850 4.8009 37 1 5.7891 2.0637 6.4413 38 1 2.6676 2.7600 3.2944 39 1 4.4150 2.4821 3.5033 40 1 3.5114 1.5094 1.3613 41 1 4.2371 0.2860 2.4318 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:56 Heat of formation + Delta-G solvation = -9.598307 kcal Electronic energy + Delta-G solvation = -18539.261132 eV Core-core repulsion = 15838.542092 eV Total energy + Delta-G solvation = -2700.719039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.45484 -37.04905 -35.79167 -33.50363 -32.01581 -29.93568 -29.35058 -27.57245 -26.19377 -22.55998 -21.54369 -21.48660 -20.05808 -19.28314 -17.60885 -16.20859 -16.05820 -15.10617 -14.74801 -14.42614 -14.21616 -13.51917 -13.33131 -13.11093 -12.81169 -12.76284 -12.55153 -12.13589 -12.03032 -11.93605 -11.79784 -11.63791 -11.22391 -11.20409 -10.89469 -10.84379 -10.66431 -10.57190 -10.49404 -9.90062 -9.83848 -9.43426 -8.91558 -8.82778 -8.32615 -7.73115 -6.10306 -3.94702 2.64094 2.67440 3.27925 3.38445 3.41883 3.82525 4.41813 4.56865 4.66967 4.75526 4.95337 5.16899 5.24600 5.26405 5.35607 5.60461 5.67111 5.76306 5.82246 5.89616 6.01749 6.07617 6.09302 6.21783 6.33552 6.43906 6.60353 6.73418 6.83954 6.88834 7.06665 7.09771 7.20725 7.44935 7.48533 7.65615 7.71518 7.74686 7.82287 7.97881 8.43382 9.00596 9.58203 10.99711 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.005250 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.496699 B = 5331.827304 C = 6180.342202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 H 0.044 0.956 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.023 4.023 7 C 0.204 3.796 8 N -0.440 5.440 9 N -0.688 5.688 10 C 0.099 3.901 11 H 0.064 0.936 12 C -0.090 4.090 13 C -0.016 4.016 14 C -0.490 4.490 15 C 0.077 3.923 16 N -0.885 5.885 17 Si 0.879 3.121 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.286 1.286 21 C 0.012 3.988 22 C -0.132 4.132 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.334 0.666 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.000 1.000 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -5.784 -13.977 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.062 0.938 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.063 4.063 7 C -0.113 4.113 8 N -0.117 5.117 9 N -0.320 5.320 10 C -0.009 4.009 11 H 0.082 0.918 12 C -0.129 4.129 13 C -0.054 4.054 14 C -0.509 4.509 15 C -0.125 4.125 16 N -0.523 5.523 17 Si 0.707 3.293 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.213 1.213 21 C -0.025 4.025 22 C -0.171 4.171 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.018 0.982 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.856 -5.869 -13.805 16.493 hybrid contribution 0.285 0.318 0.782 0.891 sum -6.571 -5.552 -13.023 15.607 Atomic orbital electron populations 1.21772 0.94968 1.01884 1.00905 1.21475 0.95568 0.96357 0.89602 0.93815 1.21757 0.93661 1.02028 0.98123 1.21658 0.96743 1.01324 0.96544 1.19337 0.81505 1.04172 1.01330 1.29330 0.95461 0.93278 0.93276 1.81244 1.13198 1.08714 1.08562 1.60872 1.33065 1.33816 1.04231 1.21570 0.97146 0.92569 0.89658 0.91812 1.21476 0.99100 0.97679 0.94637 1.19769 0.96794 0.94751 0.94072 1.20013 1.07427 1.26468 0.96992 1.24831 0.94036 0.95031 0.98646 1.69924 1.06527 1.45085 1.30734 0.86771 0.79716 0.78194 0.84632 1.18539 1.21010 1.21288 1.19321 0.98039 0.93380 0.91808 1.22302 0.96839 0.99835 0.98162 0.93241 0.92325 0.92672 0.90678 0.91179 0.90976 0.90664 0.87325 0.87509 0.84621 0.93348 0.94407 0.95032 0.97005 0.92755 0.98203 0.92939 0.95765 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.40 37.16 0.35 -1.20 16 2 C 0.08 0.95 2.45 -67.71 -0.17 0.79 16 3 H 0.04 0.59 7.08 -51.93 -0.37 0.22 16 4 C -0.12 -0.96 4.81 -26.73 -0.13 -1.09 16 5 C -0.12 -1.03 5.00 -26.74 -0.13 -1.16 16 6 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 7 C 0.20 2.16 15.43 -20.76 -0.32 1.84 16 8 N -0.44 -6.30 18.54 42.15 0.78 -5.52 16 9 N -0.69 -10.10 6.05 -99.56 -0.60 -10.71 16 10 C 0.10 1.84 2.19 -67.54 -0.15 1.69 16 11 H 0.06 1.23 7.11 -51.93 -0.37 0.86 16 12 C -0.09 -1.84 5.55 -26.63 -0.15 -1.99 16 13 C -0.02 -0.37 5.47 -27.49 -0.15 -0.52 16 14 C -0.49 -12.91 5.44 -98.92 -0.54 -13.45 16 15 C 0.08 2.13 5.43 -17.82 -0.10 2.03 16 16 N -0.89 -25.71 12.81 55.43 0.71 -25.00 16 17 Si 0.88 21.06 27.63 -169.99 -4.70 16.36 16 18 H -0.26 -6.02 6.14 56.52 0.35 -5.67 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.01 0.31 5.98 -27.49 -0.16 0.15 16 22 C -0.13 -2.74 5.21 -26.42 -0.14 -2.88 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.71 7.42 -51.93 -0.39 0.33 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.33 4.75 6.22 -39.29 -0.24 4.50 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.73 5.02 -51.93 -0.26 0.47 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.05 1.44 7.10 -51.93 -0.37 1.08 16 40 H 0.02 0.46 7.37 -51.93 -0.38 0.07 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -30.27 323.18 -7.86 -38.13 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.98 Total: -2.03 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.95 Total: -16.11 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.89 Total: -41.23 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.70 Total: 16.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.27 -7.86 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.530 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds