Wall clock time and date at job start Sun Mar 29 2020 23:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47486 * 2 1 4 4 C 1.52998 * 109.47229 * 239.99740 * 2 1 3 5 5 C 1.52997 * 109.47327 * 175.00238 * 4 2 1 6 6 C 1.52994 * 109.47218 * 180.02562 * 5 4 2 7 7 C 1.47209 * 109.46953 * 179.97438 * 6 5 4 8 8 N 5.90998 * 150.50485 * 246.70551 * 2 1 3 9 9 N 1.46903 * 109.46717 * 120.00205 * 2 1 3 10 10 C 1.46894 * 111.00041 * 274.99790 * 9 2 1 11 11 H 1.09002 * 109.41684 * 35.14172 * 10 9 2 12 12 C 1.52961 * 109.41539 * 155.00298 * 10 9 2 13 13 C 1.53226 * 109.40481 * 183.63569 * 12 10 9 14 14 C 1.51268 * 108.53823 * 305.37224 * 13 12 10 15 15 C 1.37884 * 120.85015 * 231.37077 * 14 13 12 16 16 N 1.31514 * 119.99796 * 164.54285 * 15 14 13 17 17 Si 1.86793 * 119.99763 * 344.54533 * 15 14 13 18 18 H 1.48496 * 109.47557 * 354.63728 * 17 15 14 19 19 H 1.48501 * 109.46984 * 114.64056 * 17 15 14 20 20 H 1.48504 * 109.47262 * 234.63229 * 17 15 14 21 21 C 1.51269 * 118.30296 * 51.34618 * 14 13 12 22 22 C 1.53229 * 108.69405 * 308.56304 * 21 14 13 23 23 H 1.09000 * 109.46936 * 60.00051 * 1 2 3 24 24 H 1.08999 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47286 * 299.99767 * 1 2 3 26 26 H 1.09000 * 109.47314 * 295.00201 * 4 2 1 27 27 H 1.09005 * 109.47018 * 55.00238 * 4 2 1 28 28 H 1.09000 * 109.46893 * 300.00220 * 5 4 2 29 29 H 1.09005 * 109.47072 * 60.00033 * 5 4 2 30 30 H 1.09000 * 109.47090 * 299.99759 * 6 5 4 31 31 H 1.09004 * 109.47444 * 60.00410 * 6 5 4 32 32 H 1.00907 * 110.99802 * 151.04791 * 9 2 1 33 33 H 1.08998 * 109.48250 * 63.65349 * 12 10 9 34 34 H 1.08999 * 109.49057 * 303.62225 * 12 10 9 35 35 H 1.08998 * 109.62707 * 185.65836 * 13 12 10 36 36 H 1.09007 * 109.63133 * 65.08754 * 13 12 10 37 37 H 0.97004 * 120.00037 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.62405 * 68.37035 * 21 14 13 39 39 H 1.09000 * 109.62876 * 188.75076 * 21 14 13 40 40 H 1.08998 * 109.48115 * 174.70340 * 22 21 14 41 41 H 1.09005 * 109.47989 * 294.74145 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0747 -1.3341 -2.5631 7 6 5.5418 -1.2298 -2.6254 8 7 6.6740 -1.1507 -2.6726 9 7 2.0196 -0.6926 1.1995 10 6 2.0824 0.2224 2.3469 11 1 1.2558 0.9308 2.2911 12 6 1.9768 -0.5809 3.6443 13 6 1.9509 0.3800 4.8374 14 6 3.1653 1.2785 4.7578 15 6 4.0041 1.4313 5.8413 16 7 5.1988 1.9566 5.6791 17 14 3.4436 0.8920 7.5396 18 1 2.0249 0.4577 7.4781 19 1 4.2877 -0.2382 8.0038 20 1 3.5729 2.0279 8.4875 21 6 3.4361 2.0047 3.4587 22 6 3.4113 0.9876 2.3130 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7516 -1.7716 -1.2055 27 1 1.6054 -0.2618 -2.1370 28 1 3.8532 0.4369 -1.3573 29 1 3.9994 -1.0729 -0.4258 30 1 3.7864 -2.3844 -2.5199 31 1 3.6402 -0.8742 -3.4507 32 1 2.9173 -1.1206 1.0288 33 1 2.8364 -1.2455 3.7313 34 1 1.0606 -1.1713 3.6329 35 1 1.9771 -0.1892 5.7666 36 1 1.0449 0.9850 4.8009 37 1 5.7891 2.0637 6.4413 38 1 2.6676 2.7600 3.2944 39 1 4.4150 2.4821 3.5033 40 1 3.5114 1.5094 1.3613 41 1 4.2371 0.2860 2.4318 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:55 Heat of formation + Delta-G solvation = -28.017188 kcal Electronic energy + Delta-G solvation = -18540.059834 eV Core-core repulsion = 15838.542092 eV Total energy + Delta-G solvation = -2701.517742 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.70271 -38.06289 -37.07262 -34.78736 -33.50619 -31.50696 -31.02556 -28.33652 -27.77620 -23.68500 -23.33695 -22.90707 -21.08723 -20.89382 -18.43883 -18.00372 -16.88104 -16.38939 -16.10559 -15.90551 -15.22620 -14.84979 -14.71368 -14.46483 -14.24739 -14.01498 -13.82287 -13.64309 -13.43430 -13.12382 -12.84212 -12.73110 -12.66364 -12.46581 -12.38983 -12.10976 -11.86230 -11.75356 -11.66798 -11.47238 -11.30998 -11.20814 -10.73171 -10.71731 -10.36474 -9.06465 -8.19374 -6.06934 1.36591 1.42053 1.52325 1.83164 1.88282 2.41927 3.06331 3.16684 3.45139 3.96766 4.10274 4.20613 4.25371 4.38216 4.51715 4.60091 4.72590 4.76952 4.78730 4.90483 4.95034 4.99815 5.03497 5.09915 5.11410 5.14379 5.25064 5.28356 5.36799 5.38922 5.49803 5.52392 5.61598 5.63394 5.66638 5.76758 5.89146 6.37358 6.39096 6.68031 6.73455 6.97319 7.48185 8.92325 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.005250 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.496699 B = 5331.827304 C = 6180.342202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.073 3.927 3 H 0.027 0.973 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.015 4.015 7 C 0.231 3.769 8 N -0.518 5.518 9 N -0.681 5.681 10 C 0.113 3.887 11 H 0.060 0.940 12 C -0.085 4.085 13 C -0.018 4.018 14 C -0.500 4.500 15 C 0.020 3.980 16 N -0.930 5.930 17 Si 0.935 3.065 18 H -0.243 1.243 19 H -0.284 1.284 20 H -0.288 1.288 21 C 0.007 3.993 22 C -0.118 4.118 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.032 0.968 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.338 0.662 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.017 0.983 37 H 0.261 0.739 38 H -0.001 1.001 39 H 0.015 0.985 40 H 0.039 0.961 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -7.418 -15.617 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.037 4.037 3 H 0.045 0.955 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.055 4.055 7 C -0.085 4.085 8 N -0.196 5.196 9 N -0.313 5.313 10 C 0.003 3.997 11 H 0.078 0.922 12 C -0.124 4.124 13 C -0.057 4.057 14 C -0.519 4.519 15 C -0.178 4.178 16 N -0.570 5.570 17 Si 0.761 3.239 18 H -0.167 1.167 19 H -0.210 1.210 20 H -0.215 1.215 21 C -0.031 4.031 22 C -0.158 4.158 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.549 -7.517 -15.460 19.664 hybrid contribution 1.054 0.884 1.231 1.846 sum -8.494 -6.632 -14.230 17.850 Atomic orbital electron populations 1.21751 0.94121 1.02289 1.01014 1.21667 0.96214 0.95779 0.90033 0.95493 1.21691 0.92970 1.02653 0.97040 1.21600 0.97167 1.00576 0.96895 1.19636 0.78231 1.06123 1.01467 1.30226 0.96273 0.90971 0.91002 1.81269 1.15767 1.11428 1.11155 1.60834 1.33267 1.32751 1.04423 1.21266 0.95105 0.92534 0.90760 0.92215 1.21377 0.99691 0.97091 0.94222 1.19808 0.95391 0.94865 0.95593 1.20643 1.08063 1.26034 0.97159 1.25642 0.94177 0.95760 1.02241 1.70062 1.07887 1.47561 1.31505 0.85869 0.80108 0.77603 0.80324 1.16674 1.20972 1.21500 1.19318 0.95828 0.94311 0.93667 1.22127 0.97948 0.98614 0.97083 0.90895 0.91697 0.94895 0.89153 0.88282 0.92452 0.92714 0.84209 0.83907 0.84193 0.94395 0.92191 0.95053 0.96483 0.93003 0.98311 0.96622 0.94187 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.40 71.98 0.68 -1.89 16 2 C 0.07 1.52 2.45 44.91 0.11 1.63 16 3 H 0.03 0.67 7.08 -2.39 -0.02 0.65 16 4 C -0.11 -1.27 4.81 30.59 0.15 -1.12 16 5 C -0.12 -1.69 5.00 30.59 0.15 -1.54 16 6 C -0.02 -0.12 5.70 28.79 0.16 0.04 16 7 C 0.23 4.53 15.43 89.44 1.38 5.91 16 8 N -0.52 -14.88 18.54 20.01 0.37 -14.51 16 9 N -0.68 -18.45 6.05 -468.90 -2.84 -21.29 16 10 C 0.11 4.04 2.19 45.03 0.10 4.14 16 11 H 0.06 2.21 7.11 -2.39 -0.02 2.20 16 12 C -0.09 -3.34 5.55 30.66 0.17 -3.17 16 13 C -0.02 -0.84 5.47 30.10 0.16 -0.67 16 14 C -0.50 -26.65 5.44 -16.17 -0.09 -26.74 16 15 C 0.02 1.11 5.43 84.66 0.46 1.57 16 16 N -0.93 -56.06 12.81 21.45 0.27 -55.78 16 17 Si 0.94 43.61 27.63 68.60 1.90 45.51 16 18 H -0.24 -10.53 6.14 99.48 0.61 -9.92 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 21 C 0.01 0.35 5.98 30.11 0.18 0.53 16 22 C -0.12 -4.94 5.21 30.80 0.16 -4.78 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 0.77 7.42 -2.39 -0.02 0.75 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.99 6.43 -2.38 -0.02 0.97 16 30 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.14 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.34 8.93 6.22 -89.69 -0.56 8.37 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.03 1.41 5.02 -2.39 -0.01 1.39 16 36 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.01 0.88 7.10 -2.39 -0.02 0.86 16 40 H 0.04 1.51 7.37 -2.39 -0.02 1.50 16 41 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -69.16 323.18 3.83 -65.33 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.35 Total: 6.82 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 3.78 Total: -26.09 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -2.19 Total: -91.58 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.51 kcal Total: -69.16 3.83 -65.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.316 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds