Wall clock time and date at job start Sun Mar 29 2020 22:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34850 * 125.88604 * 2 1 4 4 C 1.40897 * 107.41447 * 180.02562 * 3 2 1 5 5 C 1.34844 * 107.41552 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.88897 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47140 * 95.02312 * 6 5 4 8 8 C 1.46898 * 110.99888 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47557 * 324.99945 * 8 7 6 10 10 C 1.52998 * 109.47420 * 85.00182 * 8 7 6 11 11 C 1.53001 * 109.47054 * 205.00296 * 8 7 6 12 12 C 1.53001 * 109.47406 * 64.99745 * 11 8 7 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99663 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99763 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99799 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00259 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47227 * 89.99810 * 17 15 13 19 19 H 1.48497 * 109.47364 * 210.00240 * 17 15 13 20 20 H 1.48503 * 109.46852 * 329.99689 * 17 15 13 21 21 N 1.36336 * 125.89411 * 180.32588 * 2 1 3 22 22 C 1.46505 * 125.63643 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.46761 * 89.97958 * 1 2 3 24 24 H 1.08998 * 109.46833 * 209.97649 * 1 2 3 25 25 H 1.08999 * 109.46933 * 329.97578 * 1 2 3 26 26 H 1.07995 * 126.29659 * 0.03454 * 3 2 1 27 27 H 1.07999 * 126.29304 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47103 * 335.02413 * 6 5 4 29 29 H 1.09000 * 109.47247 * 215.02291 * 6 5 4 30 30 H 1.00901 * 111.00013 * 303.95472 * 7 6 5 31 31 H 1.09000 * 109.47137 * 300.00422 * 10 8 7 32 32 H 1.09002 * 109.46948 * 59.99390 * 10 8 7 33 33 H 1.08993 * 109.47372 * 179.97438 * 10 8 7 34 34 H 1.08998 * 109.47326 * 185.00261 * 11 8 7 35 35 H 1.09002 * 109.46920 * 304.99972 * 11 8 7 36 36 H 1.08997 * 109.46776 * 300.00496 * 12 11 8 37 37 H 1.09002 * 109.46896 * 60.00212 * 12 11 8 38 38 H 0.97008 * 119.99565 * 180.02562 * 16 15 13 39 39 H 1.08993 * 109.47269 * 270.19348 * 22 21 2 40 40 H 1.09006 * 109.46984 * 30.19255 * 22 21 2 41 41 H 1.09005 * 109.47306 * 150.18674 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6339 0.6461 -0.0006 5 6 3.6090 -0.7021 -0.0015 6 6 4.8134 -1.6079 -0.0030 7 7 5.1328 -2.0001 1.3763 8 6 6.3040 -2.8859 1.4138 9 1 6.3022 -3.5283 0.5332 10 6 7.5809 -2.0431 1.4276 11 6 6.2497 -3.7500 2.6754 12 6 5.0389 -4.6825 2.6031 13 6 4.9859 -5.5340 3.8455 14 1 5.7400 -5.4209 4.6102 15 6 3.9745 -6.4572 4.0057 16 7 3.9279 -7.1999 5.0900 17 14 2.6705 -6.6533 2.6826 18 1 3.1115 -7.6763 1.7006 19 1 1.3934 -7.0837 3.3061 20 1 2.4700 -5.3555 1.9891 21 7 2.3064 -1.1044 -0.0063 22 6 1.8422 -2.4940 -0.0137 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5142 26 1 1.9671 2.1207 0.0005 27 1 4.5160 1.2692 -0.0004 28 1 5.6635 -1.0814 -0.4371 29 1 4.5976 -2.4984 -0.5932 30 1 5.2738 -1.1888 1.9595 31 1 7.6195 -1.4275 0.5288 32 1 7.5827 -1.4007 2.3082 33 1 8.4498 -2.7004 1.4559 34 1 7.1613 -4.3430 2.7491 35 1 6.1620 -3.1080 3.5519 36 1 4.1275 -4.0894 2.5294 37 1 5.1266 -5.3245 1.7266 38 1 3.2165 -7.8498 5.2025 39 1 1.7242 -2.8431 1.0121 40 1 0.8844 -2.5544 -0.5305 41 1 2.5727 -3.1184 -0.5283 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:26 Heat of formation + Delta-G solvation = 9.969202 kcal Electronic energy + Delta-G solvation = -18547.973350 eV Core-core repulsion = 15848.102821 eV Total energy + Delta-G solvation = -2699.870529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16720 -38.55408 -35.37145 -33.86894 -33.68797 -32.24932 -30.76644 -27.71098 -27.18176 -27.03484 -24.36399 -22.78641 -21.45437 -21.20449 -19.74034 -18.82348 -17.42410 -16.77218 -16.33665 -16.01428 -15.78987 -15.21631 -14.83213 -14.63219 -14.28517 -14.15370 -13.94844 -13.82433 -13.63311 -13.36971 -13.17352 -13.11019 -12.94877 -12.87194 -12.66369 -12.53795 -12.18583 -11.98704 -11.65658 -11.49145 -11.35985 -11.11785 -10.72642 -9.45833 -9.22460 -8.72080 -8.26603 -6.28970 1.30491 1.33977 1.37095 1.50566 2.09004 2.13624 2.38797 3.09629 3.42391 3.88637 3.98940 4.03118 4.13905 4.25946 4.32843 4.39922 4.44660 4.50134 4.58962 4.71767 4.74355 4.76785 4.80391 4.92228 4.92888 5.01441 5.03488 5.10003 5.24898 5.37600 5.41581 5.49162 5.59244 5.69830 5.77595 6.15891 6.25613 6.34431 6.39573 6.54571 6.57774 6.79834 7.35284 8.90759 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.006602 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.308795 B = 4240.135100 C = 5491.128053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.000 4.000 3 C -0.219 4.219 4 C -0.206 4.206 5 C 0.006 3.994 6 C 0.134 3.866 7 N -0.688 5.688 8 C 0.092 3.908 9 H 0.074 0.926 10 C -0.171 4.171 11 C -0.085 4.085 12 C 0.005 3.995 13 C -0.530 4.530 14 H 0.025 0.975 15 C -0.001 4.001 16 N -0.958 5.958 17 Si 0.953 3.047 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.240 1.240 21 N -0.441 5.441 22 C 0.071 3.929 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.343 0.657 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.026 0.974 37 H 0.007 0.993 38 H 0.264 0.736 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 15.712 -15.681 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.244 4.244 4 C -0.231 4.231 5 C -0.106 4.106 6 C 0.006 3.994 7 N -0.320 5.320 8 C -0.018 4.018 9 H 0.093 0.907 10 C -0.230 4.230 11 C -0.123 4.123 12 C -0.033 4.033 13 C -0.568 4.568 14 H 0.043 0.957 15 C -0.197 4.197 16 N -0.599 5.599 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.214 1.214 20 H -0.163 1.163 21 N -0.117 5.117 22 C -0.070 4.070 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.032 14.689 -15.600 21.803 hybrid contribution 0.338 -0.035 0.146 0.370 sum -3.694 14.654 -15.454 21.615 Atomic orbital electron populations 1.20357 0.86463 1.03710 1.03255 1.20895 0.94819 0.85799 1.09678 1.20879 0.92817 0.98120 1.12539 1.20872 0.97953 0.92954 1.11343 1.20388 0.84885 0.94395 1.10909 1.20305 0.92360 0.96320 0.90458 1.60488 1.39873 1.21999 1.09664 1.21542 0.88244 0.93959 0.98042 0.90737 1.22394 0.98094 1.00383 1.02112 1.21345 0.97735 0.96611 0.96642 1.19334 0.96393 0.93924 0.93619 1.21671 1.10605 1.19526 1.05021 0.95655 1.26068 1.00503 0.95048 0.98079 1.70100 1.34972 1.25176 1.29666 0.85612 0.77721 0.79884 0.79150 1.19368 1.21352 1.16343 1.44008 1.05638 1.06398 1.55621 1.22041 1.02133 0.79722 1.03144 0.90008 0.91809 0.89192 0.83628 0.84044 0.91735 0.91119 0.83785 0.91484 0.92482 0.91714 0.93274 0.94096 0.95569 0.97499 0.92747 0.92229 0.87986 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.87 71.24 0.70 -0.68 16 2 C 0.00 0.01 6.89 41.08 0.28 0.29 16 3 C -0.22 -5.42 10.77 22.14 0.24 -5.18 16 4 C -0.21 -5.28 10.76 22.14 0.24 -5.04 16 5 C 0.01 0.17 6.40 41.08 0.26 0.43 16 6 C 0.13 3.35 5.64 85.56 0.48 3.84 16 7 N -0.69 -20.05 5.69 -495.56 -2.82 -22.87 16 8 C 0.09 2.70 2.59 44.92 0.12 2.81 16 9 H 0.07 2.16 7.80 -2.39 -0.02 2.14 16 10 C -0.17 -3.94 9.16 71.98 0.66 -3.28 16 11 C -0.09 -3.35 4.83 30.60 0.15 -3.20 16 12 C 0.00 0.23 3.93 29.85 0.12 0.34 16 13 C -0.53 -31.70 9.66 25.60 0.25 -31.46 16 14 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16 15 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 16 N -0.96 -61.96 13.96 21.44 0.30 -61.66 16 17 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 21 N -0.44 -11.76 3.15 -518.68 -1.63 -13.39 16 22 C 0.07 1.72 10.54 127.77 1.35 3.06 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.08 7.72 -2.39 -0.02 1.06 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 27 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 28 H 0.06 1.37 7.44 -2.38 -0.02 1.35 16 29 H 0.07 1.78 7.12 -2.39 -0.02 1.76 16 30 H 0.34 9.72 8.47 -89.69 -0.76 8.96 16 31 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 32 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 1.27 6.81 -2.39 -0.02 1.26 16 37 H 0.01 0.31 7.57 -2.39 -0.02 0.30 16 38 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.86 7.65 -2.38 -0.02 1.84 16 41 H 0.08 1.98 7.11 -2.38 -0.02 1.96 16 Total: -1.00 -70.57 332.05 3.21 -67.36 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.17 Total: 21.15 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 5.31 Total: -37.68 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -4.15 Total: -97.92 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -70.57 3.21 -67.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.328 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds