Wall clock time and date at job start Sun Mar 29 2020 23:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47284 * 54.71821 * 3 2 1 5 5 C 1.46959 * 111.00093 * 189.99697 * 4 3 2 6 6 C 1.53050 * 109.36627 * 183.18564 * 5 4 3 7 7 N 1.46953 * 109.36590 * 301.59976 * 6 5 4 8 8 C 1.46899 * 111.00276 * 183.18464 * 7 6 5 9 9 H 1.08994 * 109.47117 * 302.66148 * 8 7 6 10 10 C 1.53005 * 109.46855 * 62.65553 * 8 7 6 11 11 C 1.52997 * 109.47348 * 182.65296 * 8 7 6 12 12 C 1.53000 * 109.47294 * 177.28439 * 11 8 7 13 13 C 1.50695 * 109.47428 * 185.60005 * 12 11 8 14 14 H 1.08001 * 120.00085 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00377 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99739 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00338 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47116 * 60.00144 * 17 15 13 19 19 H 1.48501 * 109.47169 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47311 * 299.99838 * 17 15 13 21 21 C 1.46959 * 110.87956 * 59.31794 * 7 6 5 22 22 C 1.46953 * 110.99968 * 313.79587 * 4 3 2 23 23 H 4.40880 * 5.52133 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.47109 * 294.71143 * 3 2 1 25 25 H 1.08998 * 109.46723 * 174.71888 * 3 2 1 26 26 H 1.09005 * 109.48761 * 63.21892 * 5 4 3 27 27 H 1.09000 * 109.49112 * 303.15561 * 5 4 3 28 28 H 1.09000 * 109.49121 * 181.63465 * 6 5 4 29 29 H 1.09003 * 109.50640 * 61.57652 * 6 5 4 30 30 H 1.09004 * 109.46948 * 59.99883 * 10 8 7 31 31 H 1.09000 * 109.47195 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47351 * 300.00087 * 10 8 7 33 33 H 1.08996 * 109.47520 * 297.28580 * 11 8 7 34 34 H 1.09005 * 109.46834 * 57.28543 * 11 8 7 35 35 H 1.09008 * 109.47360 * 305.59998 * 12 11 8 36 36 H 1.09001 * 109.47067 * 65.59747 * 12 11 8 37 37 H 0.97001 * 119.99604 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.48761 * 60.64855 * 21 7 6 39 39 H 1.09000 * 109.48614 * 180.71017 * 21 7 6 40 40 H 1.09002 * 109.49240 * 296.77931 * 22 4 3 41 41 H 1.08995 * 109.49405 * 56.84394 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.7990 -1.1305 5 6 4.5855 -1.0195 -1.0306 6 6 5.0685 -1.7861 -2.2641 7 7 4.3495 -3.0644 -2.3558 8 6 4.8395 -3.8642 -3.4864 9 1 4.7334 -3.2929 -4.4085 10 6 6.3140 -4.2084 -3.2665 11 6 4.0244 -5.1549 -3.5893 12 6 4.4894 -5.9560 -4.8070 13 6 3.5977 -7.1572 -4.9885 14 1 2.7811 -7.3319 -4.3037 15 6 3.8241 -8.0330 -6.0290 16 7 4.8182 -7.8200 -6.8633 17 14 2.7192 -9.5223 -6.2536 18 1 1.3191 -9.0730 -6.4612 19 1 3.1705 -10.2998 -7.4355 20 1 2.7898 -10.3784 -5.0422 21 6 2.8999 -2.8440 -2.4557 22 6 2.4170 -2.0773 -1.2222 23 1 -1.0499 -0.0003 -0.0001 24 1 3.0095 -0.4288 0.9336 25 1 3.0088 1.0241 -0.0946 26 1 4.8043 -1.5989 -0.1336 27 1 5.0967 -0.0583 -0.9766 28 1 6.1384 -1.9761 -2.1784 29 1 4.8747 -1.1948 -3.1591 30 1 6.4201 -4.7796 -2.3442 31 1 6.6775 -4.8022 -4.1051 32 1 6.8947 -3.2889 -3.1931 33 1 4.1688 -5.7488 -2.6869 34 1 2.9678 -4.9096 -3.6976 35 1 4.4384 -5.3279 -5.6964 36 1 5.5169 -6.2862 -4.6539 37 1 4.9778 -8.4364 -7.5951 38 1 2.6812 -2.2645 -3.3527 39 1 2.3889 -3.8052 -2.5097 40 1 2.6110 -2.6688 -0.3275 41 1 1.3471 -1.8875 -1.3080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:29 Heat of formation + Delta-G solvation = 58.434202 kcal Electronic energy + Delta-G solvation = -18399.969412 eV Core-core repulsion = 15702.200484 eV Total energy + Delta-G solvation = -2697.768928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51166 -36.86671 -34.04827 -32.88289 -31.57740 -31.01579 -28.92921 -27.49397 -25.40316 -24.07820 -23.19839 -21.54310 -19.87291 -19.14589 -18.29126 -16.69027 -16.03455 -15.28661 -15.11963 -14.71059 -14.68536 -14.26778 -14.16116 -13.89444 -13.25933 -12.77907 -12.56278 -12.24726 -12.06825 -11.64720 -11.41865 -11.23100 -11.10564 -10.97965 -10.73680 -10.69449 -10.55484 -10.40860 -10.38172 -10.01012 -9.56353 -9.26706 -8.98558 -8.49154 -8.30279 -7.98767 -5.96820 -3.98644 2.51102 2.65476 3.35378 3.39522 3.42209 3.91530 4.13656 4.17387 4.49196 4.88173 5.07972 5.13479 5.20463 5.34500 5.38858 5.42157 5.48617 5.57634 5.60754 5.72582 5.76519 5.85323 5.96930 5.99446 6.11161 6.13834 6.35949 6.44213 6.66720 6.73413 6.80688 6.86287 6.89439 7.15542 7.41543 7.43067 7.50161 7.71886 7.88186 8.03795 8.47456 9.08322 9.65032 11.14535 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.004239 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.187417 B = 6603.258828 C = 7397.528777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.161 3.839 4 N -0.537 5.537 5 C 0.059 3.941 6 C 0.054 3.946 7 N -0.536 5.536 8 C 0.082 3.918 9 H 0.036 0.964 10 C -0.140 4.140 11 C -0.105 4.105 12 C 0.023 3.977 13 C -0.519 4.519 14 H 0.053 0.947 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.053 3.947 22 C 0.057 3.943 23 H 0.218 0.782 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.020 0.980 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.091 0.909 40 H 0.042 0.958 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 15.488 12.903 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.183 4.183 3 C 0.035 3.965 4 N -0.263 5.263 5 C -0.069 4.069 6 C -0.075 4.075 7 N -0.262 5.262 8 C -0.025 4.025 9 H 0.054 0.946 10 C -0.198 4.198 11 C -0.143 4.143 12 C -0.014 4.014 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.075 4.075 22 C -0.070 4.070 23 H 0.235 0.765 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.104 15.408 12.739 20.103 hybrid contribution -0.806 -0.808 -0.235 1.165 sum -2.910 14.600 12.504 19.442 Atomic orbital electron populations 1.24916 0.95920 1.00623 1.00182 1.22834 0.94280 1.00520 1.00620 1.19077 0.84796 0.99549 0.93074 1.62320 1.04605 1.18282 1.41066 1.22188 0.87026 0.99452 0.98188 1.22165 0.98778 0.89915 0.96626 1.62265 1.03460 1.15885 1.44583 1.21777 0.95824 0.95005 0.89941 0.94607 1.21866 0.94651 1.00512 1.02745 1.21780 0.97852 0.93637 1.00987 1.19117 0.96726 0.94046 0.91514 1.21230 1.14122 1.08510 1.11905 0.92838 1.25012 0.95411 0.98034 0.95963 1.69957 1.29836 1.37438 1.16361 0.86677 0.80996 0.82926 0.77512 1.20290 1.21321 1.20255 1.22225 0.89137 0.99897 0.96233 1.22251 0.98158 0.88460 0.98164 0.76547 0.92487 0.88536 0.93772 0.90401 0.89910 0.94328 0.92337 0.91128 0.93930 0.92732 0.93196 0.96911 0.96198 0.93010 0.94289 0.89117 0.94015 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 19.06 29.55 0.56 -1.35 16 2 C -0.18 -1.98 11.54 -37.12 -0.43 -2.41 16 3 C 0.16 1.60 5.78 -6.62 -0.04 1.56 16 4 N -0.54 -6.43 4.84 -237.98 -1.15 -7.58 16 5 C 0.06 0.66 5.58 -3.77 -0.02 0.63 16 6 C 0.05 0.70 5.37 -3.77 -0.02 0.68 16 7 N -0.54 -8.32 4.58 -226.49 -1.04 -9.36 16 8 C 0.08 1.46 2.17 -67.71 -0.15 1.31 16 9 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 10 C -0.14 -2.32 8.75 37.16 0.33 -2.00 16 11 C -0.10 -2.20 4.30 -26.73 -0.12 -2.32 16 12 C 0.02 0.61 4.53 -27.89 -0.13 0.48 16 13 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.05 0.80 5.16 -3.77 -0.02 0.78 16 22 C 0.06 0.75 5.18 -3.77 -0.02 0.73 16 23 H 0.22 1.36 7.80 -54.10 -0.42 0.93 16 24 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.00 6.22 -51.93 -0.32 0.68 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.04 0.60 6.39 -51.93 -0.33 0.27 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.04 6.09 -51.93 -0.32 0.73 16 35 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.02 0.54 6.79 -51.93 -0.35 0.18 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.45 5.96 -51.93 -0.31 1.14 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.02 6.51 -51.93 -0.34 0.69 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -30.80 323.49 -8.98 -39.78 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.93 Total: -2.65 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.46 Total: -15.52 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -1.45 Total: -43.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.80 -8.98 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.218 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds