Wall clock time and date at job start Sun Mar 29 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47361 * 2 1 4 4 H 1.08999 * 110.01223 * 54.94278 * 3 2 1 5 5 C 1.53869 * 110.03576 * 293.55017 * 3 2 1 6 6 C 1.54270 * 106.63967 * 240.64009 * 5 3 2 7 7 C 1.54961 * 104.16191 * 336.44607 * 6 5 3 8 8 H 1.09001 * 110.71970 * 279.57802 * 7 6 5 9 9 N 1.46896 * 110.76686 * 156.22192 * 7 6 5 10 10 C 1.46898 * 110.99891 * 312.67930 * 9 7 6 11 11 C 1.50705 * 109.47059 * 190.00048 * 10 9 7 12 12 H 1.07995 * 120.00050 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99758 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00085 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99661 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47101 * 90.00059 * 15 13 11 17 17 H 1.48501 * 109.47413 * 210.00036 * 15 13 11 18 18 H 1.48500 * 109.47286 * 330.00402 * 15 13 11 19 19 C 1.46904 * 110.99861 * 76.63264 * 9 7 6 20 20 C 1.52993 * 109.46925 * 70.00030 * 19 9 7 21 21 C 1.47206 * 109.46925 * 179.97438 * 20 19 9 22 22 N 9.04608 * 126.69123 * 343.37579 * 2 1 3 23 23 C 1.54268 * 110.07209 * 176.35454 * 3 2 1 24 24 H 1.08998 * 109.47280 * 59.99038 * 1 2 3 25 25 H 1.08992 * 109.47525 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46743 * 299.99392 * 1 2 3 27 27 H 1.09005 * 109.47081 * 240.00295 * 2 1 3 28 28 H 1.08998 * 109.47280 * 120.00962 * 2 1 3 29 29 H 1.09002 * 110.03268 * 359.95096 * 5 3 2 30 30 H 1.08995 * 110.03391 * 121.33402 * 5 3 2 31 31 H 1.08997 * 110.48585 * 95.09409 * 6 5 3 32 32 H 1.09002 * 110.48442 * 217.73292 * 6 5 3 33 33 H 1.09005 * 109.47039 * 309.99798 * 10 9 7 34 34 H 1.09003 * 109.47362 * 69.99728 * 10 9 7 35 35 H 0.97003 * 119.99885 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46697 * 190.00260 * 19 9 7 37 37 H 1.09004 * 109.46903 * 309.99611 * 19 9 7 38 38 H 1.08996 * 109.47588 * 300.00012 * 20 19 9 39 39 H 1.08994 * 109.47231 * 60.00404 * 20 19 9 40 40 H 1.08997 * 110.48788 * 261.59881 * 23 3 2 41 41 H 1.09000 * 110.48806 * 24.11180 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6098 1.9903 0.8384 5 6 1.6713 2.1320 -1.3252 6 6 2.9993 2.5451 -1.9927 7 6 4.0016 2.6422 -0.8149 8 1 3.8889 3.5908 -0.2899 9 7 5.3810 2.4686 -1.2891 10 6 5.4882 1.3076 -2.1827 11 6 6.9415 1.0131 -2.4516 12 1 7.7087 1.6267 -2.0032 13 6 7.2916 -0.0404 -3.2693 14 7 6.3573 -0.7886 -3.8141 15 14 9.0930 -0.4050 -3.6031 16 1 9.6040 -1.3528 -2.5804 17 1 9.2341 -1.0091 -4.9523 18 1 9.8731 0.8571 -3.5418 19 6 5.8682 3.6874 -1.9488 20 6 6.0699 4.7868 -0.9041 21 6 6.5588 6.0079 -1.5650 22 7 6.9350 6.9506 -2.0753 23 6 3.5799 1.4596 0.0921 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 1.1296 1.4388 -1.9687 30 1 1.0613 3.0140 -1.1300 31 1 3.3206 1.7854 -2.7052 32 1 2.8939 3.5115 -2.4858 33 1 5.0233 0.4418 -1.7109 34 1 4.9814 1.5247 -3.1230 35 1 6.6036 -1.5296 -4.3897 36 1 6.8165 3.4781 -2.4439 37 1 5.1378 4.0175 -2.6874 38 1 5.1217 4.9959 -0.4089 39 1 6.8004 4.4566 -0.1656 40 1 3.8987 1.6343 1.1197 41 1 3.9948 0.5232 -0.2810 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173294694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:06 Heat of formation + Delta-G solvation = 5.345281 kcal Electronic energy + Delta-G solvation = -18772.680524 eV Core-core repulsion = 16072.609488 eV Total energy + Delta-G solvation = -2700.071037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11019 -36.76673 -35.65419 -32.75877 -32.29065 -30.44134 -28.38032 -27.29147 -25.57390 -23.12615 -22.52171 -21.82964 -19.26208 -18.43707 -17.23353 -16.63440 -15.69389 -15.14991 -14.74387 -14.57955 -14.12951 -13.56538 -13.43344 -13.33158 -13.07636 -12.64663 -12.42507 -12.23354 -12.07963 -11.80101 -11.63586 -11.25976 -11.07427 -11.02174 -10.83713 -10.70202 -10.63221 -10.49041 -10.25444 -10.13951 -10.09317 -9.90491 -9.58027 -9.16258 -8.44116 -7.27073 -6.05453 -4.06399 2.97433 3.01273 3.30949 3.37683 3.40698 4.18667 4.41902 4.77873 4.97278 4.99931 5.26596 5.31111 5.34777 5.39603 5.50055 5.51968 5.57295 5.73649 5.83263 5.86344 5.92343 6.02704 6.06784 6.11498 6.15424 6.28036 6.29828 6.36708 6.44604 6.46334 6.57588 6.70778 6.72619 6.84957 7.26947 7.35722 7.75818 7.80084 8.06814 8.13619 8.50490 9.01036 9.57975 11.04947 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.007941 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.877728 B = 3524.947123 C = 5400.529866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.064 0.936 5 C -0.114 4.114 6 C -0.165 4.165 7 C 0.077 3.923 8 H 0.074 0.926 9 N -0.526 5.526 10 C 0.192 3.808 11 C -0.511 4.511 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.065 3.935 20 C -0.028 4.028 21 C 0.219 3.781 22 N -0.457 5.457 23 C -0.111 4.111 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.039 0.961 34 H -0.002 1.002 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 3.878 7.930 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.082 0.918 5 C -0.152 4.152 6 C -0.205 4.205 7 C -0.032 4.032 8 H 0.092 0.908 9 N -0.248 5.248 10 C 0.068 3.932 11 C -0.550 4.550 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.065 4.065 20 C -0.069 4.069 21 C -0.099 4.099 22 N -0.135 5.135 23 C -0.149 4.149 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.537 5.037 7.455 12.403 hybrid contribution 0.224 -0.549 -0.801 0.996 sum -8.313 4.489 6.654 11.556 Atomic orbital electron populations 1.21806 0.96520 1.01075 1.01460 1.21623 0.95129 0.96602 1.02241 1.21764 0.96263 0.95583 0.97323 0.91791 1.22121 0.97367 0.99339 0.96342 1.23134 0.95875 1.01500 0.99946 1.22726 0.88006 0.97816 0.94658 0.90753 1.62160 1.17598 1.03844 1.41219 1.19789 0.97140 0.86903 0.89389 1.21195 0.92069 1.13659 1.28034 0.91846 1.24952 0.97408 0.96137 0.95914 1.69945 1.32328 1.18822 1.32495 0.86562 0.85259 0.78550 0.77429 1.20642 1.21410 1.19883 1.21869 1.02179 0.89042 0.93367 1.19451 1.02637 0.86068 0.98718 1.29408 0.92810 0.94378 0.93277 1.81162 1.10091 1.12584 1.09671 1.22477 0.93263 0.99895 0.99275 0.92747 0.93218 0.93209 0.91539 0.92233 0.92103 0.92832 0.89737 0.92797 0.94316 0.98468 0.92949 0.88815 0.95181 0.88150 0.86716 0.92032 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.73 37.16 0.36 -1.22 16 2 C -0.12 -1.46 5.08 -26.73 -0.14 -1.60 16 3 C -0.09 -1.14 2.94 -89.50 -0.26 -1.41 16 4 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.11 -1.48 5.94 -25.61 -0.15 -1.63 16 6 C -0.17 -2.55 5.53 -25.03 -0.14 -2.69 16 7 C 0.08 1.18 2.81 -65.68 -0.18 0.99 16 8 H 0.07 0.97 6.32 -51.93 -0.33 0.65 16 9 N -0.53 -9.63 4.46 -225.65 -1.01 -10.64 16 10 C 0.19 4.48 3.59 -4.97 -0.02 4.46 16 11 C -0.51 -13.34 8.31 -34.44 -0.29 -13.62 16 12 H 0.06 1.63 7.23 -52.49 -0.38 1.25 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 15 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.07 1.08 4.70 -3.83 -0.02 1.07 16 20 C -0.03 -0.35 5.74 -29.52 -0.17 -0.52 16 21 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 22 N -0.46 -7.82 18.54 42.15 0.78 -7.04 16 23 C -0.11 -1.65 5.89 -25.07 -0.15 -1.80 16 24 H 0.05 0.57 6.90 -51.93 -0.36 0.21 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.80 6.78 -51.93 -0.35 0.45 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.58 5.61 -51.93 -0.29 1.29 16 32 H 0.05 0.79 7.94 -51.93 -0.41 0.37 16 33 H 0.04 0.97 6.02 -51.93 -0.31 0.66 16 34 H 0.00 -0.06 6.48 -51.93 -0.34 -0.40 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 1.79 6.60 -51.93 -0.34 1.44 16 37 H 0.03 0.50 7.40 -51.93 -0.38 0.12 16 38 H 0.10 1.04 6.51 -51.93 -0.34 0.70 16 39 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.45 5.79 -51.93 -0.30 1.15 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -28.41 321.32 -7.89 -36.30 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.65 Total: -1.08 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.57 Total: -13.64 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.51 Total: -42.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.41 -7.89 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173294694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.644 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds