Wall clock time and date at job start Sun Mar 29 2020 22:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47176 * 2 1 4 4 H 1.08999 * 110.43720 * 303.91133 * 3 2 1 5 5 C 1.54893 * 110.48542 * 66.45200 * 3 2 1 6 6 C 1.54889 * 102.74780 * 156.61642 * 5 3 2 7 7 C 1.54268 * 104.19810 * 322.06439 * 6 5 3 8 8 H 1.09008 * 110.02500 * 264.27195 * 7 6 5 9 9 N 1.46896 * 110.03208 * 142.89439 * 7 6 5 10 10 C 1.46901 * 111.00115 * 309.73138 * 9 7 6 11 11 C 1.50698 * 109.47157 * 201.28391 * 10 9 7 12 12 H 1.07997 * 120.00485 * 5.12966 * 11 10 9 13 13 C 1.37881 * 119.99914 * 185.11775 * 11 10 9 14 14 N 1.31519 * 119.99559 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00065 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47285 * 90.00242 * 15 13 11 17 17 H 1.48505 * 109.47150 * 210.00363 * 15 13 11 18 18 H 1.48507 * 109.47179 * 329.99999 * 15 13 11 19 19 C 1.46901 * 111.00481 * 73.69195 * 9 7 6 20 20 C 1.52995 * 109.47336 * 162.69085 * 19 9 7 21 21 C 1.47199 * 109.47403 * 179.31831 * 20 19 9 22 22 N 9.53840 * 129.90059 * 13.73262 * 2 1 3 23 23 C 1.53867 * 106.64170 * 23.58090 * 7 6 5 24 24 H 1.09000 * 109.47053 * 60.00274 * 1 2 3 25 25 H 1.09002 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47133 * 300.00173 * 1 2 3 27 27 H 1.08996 * 109.47133 * 239.99827 * 2 1 3 28 28 H 1.09001 * 109.47033 * 120.00276 * 2 1 3 29 29 H 1.09004 * 110.75529 * 38.30995 * 5 3 2 30 30 H 1.09002 * 110.91643 * 275.00813 * 5 3 2 31 31 H 1.08998 * 110.48786 * 203.37395 * 6 5 3 32 32 H 1.09004 * 110.59697 * 80.79292 * 6 5 3 33 33 H 1.08989 * 109.47157 * 321.29223 * 10 9 7 34 34 H 1.09006 * 109.46429 * 81.28903 * 10 9 7 35 35 H 0.97007 * 119.99478 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.46991 * 282.69631 * 19 9 7 37 37 H 1.09001 * 109.46967 * 42.69200 * 19 9 7 38 38 H 1.09000 * 109.47393 * 299.31786 * 20 19 9 39 39 H 1.09007 * 109.47123 * 59.31742 * 20 19 9 40 40 H 1.08999 * 110.03704 * 119.31379 * 23 7 6 41 41 H 1.09010 * 110.03129 * 240.74714 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9912 -0.8476 5 6 1.6742 2.1468 1.3302 6 6 2.7274 3.2790 1.4183 7 6 4.0192 2.6376 0.8707 8 1 4.6297 2.2664 1.6940 9 7 4.7769 3.6223 0.0871 10 6 3.9159 4.2815 -0.9039 11 6 4.7684 4.8645 -2.0013 12 1 5.8335 4.6858 -2.0105 13 6 4.1886 5.6259 -2.9939 14 7 2.8917 5.8438 -2.9825 15 14 5.2452 6.3480 -4.3546 16 1 5.3247 5.3860 -5.4830 17 1 4.6407 7.6188 -4.8291 18 1 6.6102 6.6136 -3.8333 19 6 5.4218 4.6091 0.9637 20 6 6.5231 5.3362 0.1896 21 6 7.1584 6.3364 1.0630 22 7 7.6485 7.1083 1.7371 23 6 3.5832 1.4693 -0.0307 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.7739 1.4602 2.1709 30 1 0.6661 2.5593 1.2876 31 1 2.8657 3.5917 2.4533 32 1 2.4313 4.1271 0.8009 33 1 3.2261 3.5522 -1.3282 34 1 3.3504 5.0784 -0.4209 35 1 2.4838 6.3798 -3.6806 36 1 4.6802 5.3312 1.3052 37 1 5.8573 4.1010 1.8241 38 1 7.2709 4.6157 -0.1415 39 1 6.0894 5.8343 -0.6777 40 1 3.9339 1.6329 -1.0497 41 1 3.9814 0.5309 0.3556 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173294698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:10 Heat of formation + Delta-G solvation = 7.483259 kcal Electronic energy + Delta-G solvation = -18922.107561 eV Core-core repulsion = 16222.129234 eV Total energy + Delta-G solvation = -2699.978327 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10900 -36.61359 -35.48136 -32.83836 -32.24279 -30.03918 -28.26558 -27.62353 -25.59180 -23.09044 -22.41972 -21.49421 -19.50066 -18.57906 -17.41318 -15.90491 -15.56182 -15.09383 -14.62971 -14.38503 -14.30029 -13.81353 -13.44148 -13.12748 -12.78743 -12.58939 -12.30026 -12.13412 -12.00112 -11.80547 -11.32235 -11.16913 -11.11261 -10.97536 -10.82016 -10.70976 -10.47908 -10.35544 -10.22041 -10.17636 -10.05718 -9.94355 -9.51506 -9.19700 -8.45406 -7.32020 -6.09601 -4.10220 3.22671 3.27200 3.30659 3.35847 3.37112 4.32689 4.47836 4.88861 5.01799 5.04301 5.23287 5.26184 5.39440 5.49131 5.60324 5.68631 5.81728 5.84466 5.92110 5.94987 6.02758 6.08870 6.10346 6.13619 6.17146 6.29295 6.36900 6.41621 6.43663 6.52664 6.69797 6.77693 6.82956 6.87680 7.26833 7.33054 7.75012 8.05006 8.08045 8.13208 8.47738 8.96453 9.52612 10.99782 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.007384 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.543604 B = 3790.953790 C = 5127.225754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.165 4.165 7 C 0.086 3.914 8 H 0.067 0.933 9 N -0.530 5.530 10 C 0.187 3.813 11 C -0.514 4.514 12 H 0.072 0.928 13 C 0.058 3.942 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.271 1.271 19 C 0.079 3.921 20 C -0.046 4.046 21 C 0.223 3.777 22 N -0.477 5.477 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.001 0.999 35 H 0.261 0.739 36 H 0.033 0.967 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.152 0.848 40 H 0.082 0.918 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -9.605 5.800 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.112 4.112 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.204 4.204 7 C -0.024 4.024 8 H 0.086 0.914 9 N -0.254 5.254 10 C 0.063 3.937 11 C -0.553 4.553 12 H 0.090 0.910 13 C -0.144 4.144 14 N -0.530 5.530 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.196 1.196 19 C -0.051 4.051 20 C -0.086 4.086 21 C -0.093 4.093 22 N -0.155 5.155 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.019 0.981 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.169 0.831 40 H 0.101 0.899 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.200 -8.608 6.444 10.819 hybrid contribution -0.428 0.630 -0.641 0.996 sum -1.629 -7.978 5.803 9.998 Atomic orbital electron populations 1.21784 0.96372 1.00843 1.01925 1.21542 0.95453 0.96736 1.01408 1.22070 0.95966 0.95060 0.98149 0.90383 1.22434 0.98363 0.97104 0.97061 1.23178 0.97004 0.99556 1.00650 1.22281 0.92354 0.93115 0.94619 0.91442 1.62278 1.33320 1.15599 1.14170 1.19858 0.91716 0.93021 0.89141 1.21312 0.95092 1.30738 1.08113 0.90963 1.24996 0.94918 0.96529 0.97944 1.69950 1.09756 1.39333 1.34004 0.86636 0.80611 0.78546 0.82510 1.20612 1.21414 1.19605 1.21673 0.95317 0.94026 0.94106 1.20070 0.97673 0.93676 0.97140 1.29860 0.92521 0.93855 0.93106 1.81102 1.11053 1.12109 1.11249 1.22217 0.94101 0.96722 1.01617 0.92727 0.93424 0.92812 0.92236 0.92446 0.92295 0.92361 0.92873 0.89885 0.94752 0.98081 0.92879 0.94904 0.92485 0.87587 0.83126 0.89901 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.76 37.16 0.36 -1.29 16 2 C -0.11 -1.34 5.29 -26.73 -0.14 -1.49 16 3 C -0.09 -1.33 2.67 -88.90 -0.24 -1.57 16 4 H 0.08 1.29 7.80 -51.93 -0.40 0.89 16 5 C -0.11 -1.52 5.51 -24.74 -0.14 -1.65 16 6 C -0.16 -2.56 5.81 -25.07 -0.15 -2.70 16 7 C 0.09 1.35 2.94 -66.60 -0.20 1.16 16 8 H 0.07 0.98 7.82 -51.92 -0.41 0.57 16 9 N -0.53 -9.70 4.33 -226.75 -0.98 -10.68 16 10 C 0.19 4.19 3.25 -4.98 -0.02 4.17 16 11 C -0.51 -12.48 6.89 -34.44 -0.24 -12.72 16 12 H 0.07 1.68 6.22 -52.49 -0.33 1.35 16 13 C 0.06 1.50 5.46 -17.82 -0.10 1.41 16 14 N -0.89 -24.46 13.29 55.43 0.74 -23.73 16 15 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C 0.08 1.32 4.59 -3.83 -0.02 1.30 16 20 C -0.05 -0.76 4.78 -29.52 -0.14 -0.90 16 21 C 0.22 3.87 15.43 -20.76 -0.32 3.55 16 22 N -0.48 -9.12 18.54 42.15 0.78 -8.34 16 23 C -0.11 -1.65 5.36 -25.56 -0.14 -1.78 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 30 H 0.06 0.78 8.01 -51.93 -0.42 0.37 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.53 5.60 -51.93 -0.29 1.24 16 33 H 0.03 0.83 6.02 -51.94 -0.31 0.52 16 34 H 0.00 0.04 6.47 -51.93 -0.34 -0.30 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.03 0.58 7.69 -51.93 -0.40 0.18 16 37 H 0.06 0.84 7.76 -51.93 -0.40 0.44 16 38 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.15 2.90 5.01 -51.92 -0.26 2.64 16 40 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 41 H 0.06 0.76 7.84 -51.92 -0.41 0.35 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -26.57 320.63 -7.91 -34.49 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.80 Total: 0.92 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.46 Total: -12.51 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.54 Total: -42.75 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.57 -7.91 -34.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173294698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.971 kcal (2) G-P(sol) polarization free energy of solvation -26.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds