Wall clock time and date at job start Sun Mar 29 2020 22:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46843 * 2 1 4 4 H 1.08991 * 109.47109 * 303.97696 * 3 2 1 5 5 C 1.52997 * 109.46798 * 183.97628 * 3 2 1 6 6 C 1.47203 * 109.47177 * 175.00146 * 5 3 2 7 7 N 4.86394 * 126.48214 * 355.39426 * 2 1 3 8 8 N 1.46894 * 109.47164 * 63.98205 * 3 2 1 9 9 C 1.46905 * 110.99909 * 222.33551 * 8 3 2 10 10 C 1.53002 * 109.47350 * 86.41408 * 9 8 3 11 11 C 1.52998 * 109.47247 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46941 * 300.00099 * 11 10 9 13 13 C 1.50704 * 109.46717 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00155 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99730 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99753 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00426 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47028 * 89.99674 * 17 15 13 19 19 H 1.48496 * 109.47325 * 210.00163 * 17 15 13 20 20 H 1.48507 * 109.46707 * 330.00245 * 17 15 13 21 21 C 1.52993 * 109.47244 * 59.99970 * 12 11 10 22 22 C 1.52997 * 109.47064 * 206.41217 * 9 8 3 23 23 H 1.08997 * 109.47421 * 294.91371 * 1 2 3 24 24 H 1.09002 * 109.47073 * 54.91838 * 1 2 3 25 25 H 1.09002 * 109.47228 * 174.91640 * 1 2 3 26 26 H 1.09004 * 109.46978 * 240.00169 * 2 1 3 27 27 H 1.08998 * 109.46673 * 119.99898 * 2 1 3 28 28 H 1.08995 * 109.47578 * 295.00353 * 5 3 2 29 29 H 1.09007 * 109.47244 * 55.00476 * 5 3 2 30 30 H 1.00893 * 111.00556 * 98.37665 * 8 3 2 31 31 H 1.08996 * 109.47145 * 326.41413 * 9 8 3 32 32 H 1.09005 * 109.46900 * 59.99884 * 10 9 8 33 33 H 1.09000 * 109.46653 * 300.00502 * 10 9 8 34 34 H 1.08999 * 109.47056 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.46400 * 59.99986 * 11 10 9 36 36 H 1.08997 * 109.46994 * 299.99434 * 12 11 10 37 37 H 0.97005 * 120.00269 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.47471 * 59.99839 * 21 12 11 39 39 H 1.09003 * 109.47159 * 179.97438 * 21 12 11 40 40 H 1.09009 * 109.46923 * 59.99989 * 22 9 8 41 41 H 1.08996 * 109.47300 * 300.00102 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6196 1.9765 -0.8521 5 6 3.5666 1.4437 -0.1000 6 6 4.0494 2.8290 -0.2208 7 7 4.4220 3.8982 -0.3140 8 7 1.6304 2.1067 1.2446 9 6 1.1593 3.4731 0.9817 10 6 -0.3284 3.4402 0.6260 11 6 -0.8191 4.8634 0.3529 12 6 -0.6122 5.7226 1.6019 13 6 -1.0961 7.1243 1.3330 14 1 -1.5095 7.3771 0.3678 15 6 -1.0102 8.0842 2.3189 16 7 -1.4321 9.3075 2.0841 17 14 -0.2946 7.6473 3.9882 18 1 1.1713 7.8843 3.9757 19 1 -0.9241 8.4936 5.0335 20 1 -0.5622 6.2164 4.2822 21 6 0.8754 5.7555 1.9575 22 6 1.3662 4.3329 2.2303 23 1 -0.3634 0.4329 0.9320 24 1 -0.3633 0.5907 -0.8410 25 1 -0.3634 -1.0236 -0.0911 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9898 0.9882 0.7952 29 1 3.8738 0.8742 -0.9773 30 1 2.3811 2.1064 1.9186 31 1 1.7223 3.8979 0.1507 32 1 -0.8914 3.0154 1.4572 33 1 -0.4758 2.8276 -0.2634 34 1 -1.8791 4.8400 0.1000 35 1 -0.2561 5.2885 -0.4780 36 1 -1.1752 5.2974 2.4327 37 1 -1.3713 9.9831 2.7777 38 1 1.4385 6.1808 1.1266 39 1 1.0229 6.3681 2.8471 40 1 2.4262 4.3563 2.4837 41 1 0.8033 3.9080 3.0613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:35 Heat of formation + Delta-G solvation = 0.401663 kcal Electronic energy + Delta-G solvation = -19069.195919 eV Core-core repulsion = 16368.910510 eV Total energy + Delta-G solvation = -2700.285408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.17105 -37.17635 -35.85609 -33.14533 -31.76130 -30.64503 -30.09788 -28.16697 -24.69084 -23.69085 -22.27024 -20.61967 -20.56842 -18.91656 -17.66594 -16.58969 -16.14974 -15.40199 -15.09907 -14.33308 -14.23745 -13.87364 -13.59866 -13.20194 -13.07525 -12.96718 -12.78110 -12.53067 -12.23688 -11.95142 -11.74282 -11.50912 -11.34544 -11.26660 -11.14700 -10.84830 -10.69176 -10.58546 -10.40113 -9.94191 -9.77309 -9.52020 -8.96220 -8.85789 -8.46734 -8.34582 -6.01844 -3.99983 2.64175 2.67762 3.31077 3.41044 3.43796 3.78278 4.08593 4.46095 4.55629 4.89058 4.93978 5.15828 5.21289 5.26312 5.28080 5.39647 5.43680 5.62056 5.73244 5.81630 5.91661 5.98362 6.03949 6.14206 6.17197 6.23232 6.31588 6.39228 6.42182 6.57670 6.69683 6.76870 6.97476 7.06692 7.20613 7.31718 7.42500 7.48113 7.64428 7.85197 8.59453 9.02985 9.61616 11.11771 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.006071 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.718863 B = 4611.347597 C = 5033.986805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C 0.089 3.911 4 H 0.081 0.919 5 C -0.053 4.053 6 C 0.190 3.810 7 N -0.420 5.420 8 N -0.678 5.678 9 C 0.092 3.908 10 C -0.102 4.102 11 C -0.100 4.100 12 C 0.015 3.985 13 C -0.511 4.511 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.299 1.299 20 H -0.264 1.264 21 C -0.116 4.116 22 C -0.120 4.120 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.338 0.662 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 -21.182 -2.977 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.023 4.023 4 H 0.100 0.900 5 C -0.095 4.095 6 C -0.128 4.128 7 N -0.097 5.097 8 N -0.309 5.309 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.003 4.003 13 C -0.549 4.549 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.189 1.189 21 C -0.154 4.154 22 C -0.158 4.158 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.157 0.843 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.831 -19.665 -3.047 21.385 hybrid contribution 1.262 0.094 0.796 1.495 sum 9.093 -19.571 -2.251 21.697 Atomic orbital electron populations 1.21671 0.94977 1.00536 1.03010 1.21467 0.97139 0.94146 1.01535 1.21779 0.89351 0.97061 0.94124 0.90039 1.20105 0.98395 0.85153 1.05829 1.29220 0.94130 0.95346 0.94146 1.81315 1.08533 1.11891 1.07914 1.60648 1.40899 1.19171 1.10193 1.21626 0.96753 0.86120 0.97227 1.21599 0.94176 0.97776 1.00485 1.21451 0.99952 0.93111 0.99295 1.19136 0.91113 0.96059 0.94039 1.21113 1.40471 0.92531 1.00800 0.90997 1.25035 0.95002 0.94860 0.98442 1.69909 1.47774 1.02536 1.34077 0.86841 0.78625 0.78561 0.84184 1.20840 1.22653 1.18913 1.21915 1.00050 0.93035 1.00406 1.21757 0.99427 0.97436 0.97218 0.91134 0.93215 0.93619 0.92055 0.91527 0.87205 0.86979 0.84284 0.94057 0.91831 0.93242 0.92589 0.93229 0.95543 0.92797 0.92519 0.93573 0.93848 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.64 37.16 0.36 -0.88 16 2 C -0.10 -0.71 5.62 -26.73 -0.15 -0.86 16 3 C 0.09 0.75 2.01 -67.72 -0.14 0.61 16 4 H 0.08 0.82 7.25 -51.93 -0.38 0.44 16 5 C -0.05 -0.35 5.03 -29.52 -0.15 -0.49 16 6 C 0.19 2.17 13.74 -20.76 -0.29 1.88 16 7 N -0.42 -6.49 18.54 42.15 0.78 -5.71 16 8 N -0.68 -7.52 5.48 -99.75 -0.55 -8.06 16 9 C 0.09 1.38 1.97 -67.71 -0.13 1.25 16 10 C -0.10 -1.64 5.43 -26.73 -0.15 -1.79 16 11 C -0.10 -2.01 5.14 -26.73 -0.14 -2.14 16 12 C 0.02 0.36 1.69 -91.77 -0.16 0.21 16 13 C -0.51 -14.69 9.14 -34.44 -0.31 -15.00 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 16 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 17 Si 0.89 22.69 24.37 -169.99 -4.14 18.55 16 18 H -0.28 -7.09 6.87 56.52 0.39 -6.70 16 19 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 20 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 21 C -0.12 -2.58 4.68 -26.76 -0.13 -2.71 16 22 C -0.12 -2.12 5.18 -26.76 -0.14 -2.26 16 23 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 24 H 0.05 0.46 7.82 -51.93 -0.41 0.05 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.11 0.49 8.04 -51.93 -0.42 0.07 16 29 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.34 3.47 7.71 -39.30 -0.30 3.16 16 31 H 0.04 0.68 6.60 -51.93 -0.34 0.34 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.71 7.48 -51.93 -0.39 0.32 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 39 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 40 H 0.04 0.72 8.12 -51.92 -0.42 0.30 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -32.65 318.50 -6.96 -39.61 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.01 Total: -1.24 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.61 Total: -20.29 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 1.01 Total: -41.43 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.65 -6.96 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.008 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds