Wall clock time and date at job start Sun Mar 29 2020 22:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46843 * 2 1 4 4 H 1.08991 * 109.47109 * 303.97696 * 3 2 1 5 5 C 1.52997 * 109.46798 * 183.97628 * 3 2 1 6 6 C 1.47203 * 109.47177 * 175.00146 * 5 3 2 7 7 N 4.86394 * 126.48214 * 355.39426 * 2 1 3 8 8 N 1.46894 * 109.47164 * 63.98205 * 3 2 1 9 9 C 1.46905 * 110.99909 * 222.33551 * 8 3 2 10 10 C 1.53002 * 109.47350 * 86.41408 * 9 8 3 11 11 C 1.52998 * 109.47247 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46941 * 300.00099 * 11 10 9 13 13 C 1.50704 * 109.46717 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00155 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99730 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99753 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00426 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47028 * 89.99674 * 17 15 13 19 19 H 1.48496 * 109.47325 * 210.00163 * 17 15 13 20 20 H 1.48507 * 109.46707 * 330.00245 * 17 15 13 21 21 C 1.52993 * 109.47244 * 59.99970 * 12 11 10 22 22 C 1.52997 * 109.47064 * 206.41217 * 9 8 3 23 23 H 1.08997 * 109.47421 * 294.91371 * 1 2 3 24 24 H 1.09002 * 109.47073 * 54.91838 * 1 2 3 25 25 H 1.09002 * 109.47228 * 174.91640 * 1 2 3 26 26 H 1.09004 * 109.46978 * 240.00169 * 2 1 3 27 27 H 1.08998 * 109.46673 * 119.99898 * 2 1 3 28 28 H 1.08995 * 109.47578 * 295.00353 * 5 3 2 29 29 H 1.09007 * 109.47244 * 55.00476 * 5 3 2 30 30 H 1.00893 * 111.00556 * 98.37665 * 8 3 2 31 31 H 1.08996 * 109.47145 * 326.41413 * 9 8 3 32 32 H 1.09005 * 109.46900 * 59.99884 * 10 9 8 33 33 H 1.09000 * 109.46653 * 300.00502 * 10 9 8 34 34 H 1.08999 * 109.47056 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.46400 * 59.99986 * 11 10 9 36 36 H 1.08997 * 109.46994 * 299.99434 * 12 11 10 37 37 H 0.97005 * 120.00269 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.47471 * 59.99839 * 21 12 11 39 39 H 1.09003 * 109.47159 * 179.97438 * 21 12 11 40 40 H 1.09009 * 109.46923 * 59.99989 * 22 9 8 41 41 H 1.08996 * 109.47300 * 300.00102 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6196 1.9765 -0.8521 5 6 3.5666 1.4437 -0.1000 6 6 4.0494 2.8290 -0.2208 7 7 4.4220 3.8982 -0.3140 8 7 1.6304 2.1067 1.2446 9 6 1.1593 3.4731 0.9817 10 6 -0.3284 3.4402 0.6260 11 6 -0.8191 4.8634 0.3529 12 6 -0.6122 5.7226 1.6019 13 6 -1.0961 7.1243 1.3330 14 1 -1.5095 7.3771 0.3678 15 6 -1.0102 8.0842 2.3189 16 7 -1.4321 9.3075 2.0841 17 14 -0.2946 7.6473 3.9882 18 1 1.1713 7.8843 3.9757 19 1 -0.9241 8.4936 5.0335 20 1 -0.5622 6.2164 4.2822 21 6 0.8754 5.7555 1.9575 22 6 1.3662 4.3329 2.2303 23 1 -0.3634 0.4329 0.9320 24 1 -0.3633 0.5907 -0.8410 25 1 -0.3634 -1.0236 -0.0911 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9898 0.9882 0.7952 29 1 3.8738 0.8742 -0.9773 30 1 2.3811 2.1064 1.9186 31 1 1.7223 3.8979 0.1507 32 1 -0.8914 3.0154 1.4572 33 1 -0.4758 2.8276 -0.2634 34 1 -1.8791 4.8400 0.1000 35 1 -0.2561 5.2885 -0.4780 36 1 -1.1752 5.2974 2.4327 37 1 -1.3713 9.9831 2.7777 38 1 1.4385 6.1808 1.1266 39 1 1.0229 6.3681 2.8471 40 1 2.4262 4.3563 2.4837 41 1 0.8033 3.9080 3.0613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:34 Heat of formation + Delta-G solvation = -21.788319 kcal Electronic energy + Delta-G solvation = -19070.158148 eV Core-core repulsion = 16368.910510 eV Total energy + Delta-G solvation = -2701.247638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30918 -38.39157 -36.85853 -34.89394 -33.22927 -31.74226 -31.43043 -29.54702 -26.12101 -24.85511 -23.73522 -22.17230 -21.35060 -20.51349 -18.79441 -18.43725 -17.26584 -16.63749 -16.21061 -15.70061 -15.15764 -15.03776 -14.96264 -14.76563 -14.57599 -14.37853 -13.82291 -13.70666 -13.45878 -13.21208 -13.06570 -12.91136 -12.60160 -12.42426 -12.21184 -12.06673 -11.88513 -11.83407 -11.69850 -11.51257 -11.39030 -11.24568 -10.93786 -10.75778 -10.54626 -9.27393 -8.33382 -6.36349 1.25678 1.30326 1.42081 1.80462 1.85338 2.28886 3.01974 3.10479 3.16871 3.80396 3.93716 3.98349 4.26859 4.34756 4.36803 4.44348 4.52204 4.67892 4.68743 4.71197 4.73550 4.77517 4.85237 4.89562 4.98990 5.04332 5.10428 5.22436 5.30053 5.34952 5.39251 5.44048 5.56189 5.59817 5.68669 5.77379 5.79683 6.18368 6.30167 6.57597 6.67254 6.71478 7.29070 8.84009 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.006071 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.718863 B = 4611.347597 C = 5033.986805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C 0.087 3.913 4 H 0.065 0.935 5 C -0.049 4.049 6 C 0.218 3.782 7 N -0.503 5.503 8 N -0.672 5.672 9 C 0.104 3.896 10 C -0.090 4.090 11 C -0.097 4.097 12 C 0.016 3.984 13 C -0.520 4.520 14 H 0.029 0.971 15 C 0.008 3.992 16 N -0.953 5.953 17 Si 0.951 3.049 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.240 1.240 21 C -0.114 4.114 22 C -0.113 4.113 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.348 0.652 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 -25.423 -1.987 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.024 4.024 4 H 0.084 0.916 5 C -0.089 4.089 6 C -0.099 4.099 7 N -0.181 5.181 8 N -0.304 5.304 9 C -0.006 4.006 10 C -0.128 4.128 11 C -0.135 4.135 12 C -0.003 4.003 13 C -0.558 4.558 14 H 0.047 0.953 15 C -0.189 4.189 16 N -0.594 5.594 17 Si 0.779 3.221 18 H -0.202 1.202 19 H -0.225 1.225 20 H -0.163 1.163 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.356 -23.945 -2.070 25.791 hybrid contribution 0.710 1.406 0.358 1.615 sum 10.066 -22.539 -1.712 24.744 Atomic orbital electron populations 1.21682 0.96546 1.00797 1.01478 1.21434 0.95599 0.92798 1.03533 1.21863 0.90702 0.97694 0.92132 0.91629 1.20464 0.96667 0.82593 1.09225 1.30178 0.92127 0.95859 0.91696 1.81350 1.11269 1.14569 1.10868 1.60579 1.41887 1.16074 1.11850 1.21322 0.95900 0.88069 0.95337 1.21461 0.94920 0.94740 1.01669 1.21371 0.99680 0.95380 0.97081 1.19101 0.92099 0.93473 0.95643 1.21503 1.39842 0.95447 0.99033 0.95306 1.25934 0.95517 0.94576 1.02832 1.70065 1.49775 1.03917 1.35669 0.85790 0.77901 0.79569 0.78886 1.20174 1.22451 1.16336 1.21777 0.98470 0.96157 0.98856 1.21664 1.00177 0.94545 0.98720 0.93028 0.94282 0.92629 0.89432 0.90092 0.83851 0.83154 0.83214 0.95704 0.91374 0.91079 0.93190 0.94729 0.95512 0.92652 0.94582 0.95002 0.92428 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.64 71.98 0.69 -1.33 16 2 C -0.10 -0.82 5.62 30.60 0.17 -0.65 16 3 C 0.09 1.10 2.01 44.92 0.09 1.19 16 4 H 0.07 1.10 7.25 -2.39 -0.02 1.08 16 5 C -0.05 -0.39 5.03 28.79 0.14 -0.24 16 6 C 0.22 4.44 13.74 89.44 1.23 5.67 16 7 N -0.50 -15.24 18.54 20.01 0.37 -14.87 16 8 N -0.67 -12.38 5.48 -469.49 -2.57 -14.95 16 9 C 0.10 2.90 1.97 44.91 0.09 2.99 16 10 C -0.09 -2.73 5.43 30.59 0.17 -2.57 16 11 C -0.10 -3.94 5.14 30.59 0.16 -3.78 16 12 C 0.02 0.75 1.69 -11.54 -0.02 0.73 16 13 C -0.52 -31.21 9.14 25.60 0.23 -30.97 16 14 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 15 C 0.01 0.47 5.45 84.65 0.46 0.93 16 16 N -0.95 -62.37 13.96 21.45 0.30 -62.08 16 17 Si 0.95 47.31 24.37 68.60 1.67 48.99 16 18 H -0.28 -13.33 6.87 99.48 0.68 -12.64 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 20 H -0.24 -10.88 6.53 99.48 0.65 -10.23 16 21 C -0.11 -5.06 4.68 30.57 0.14 -4.92 16 22 C -0.11 -3.74 5.18 30.58 0.16 -3.58 16 23 H 0.05 0.91 7.87 -2.39 -0.02 0.89 16 24 H 0.04 0.61 7.82 -2.39 -0.02 0.59 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.14 0.35 8.04 -2.39 -0.02 0.33 16 29 H 0.15 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.35 5.55 7.71 -89.70 -0.69 4.86 16 31 H 0.02 0.80 6.60 -2.39 -0.02 0.78 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 1.88 7.48 -2.39 -0.02 1.86 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 37 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 38 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.03 1.48 3.27 -2.39 -0.01 1.48 16 40 H 0.06 1.76 8.12 -2.38 -0.02 1.74 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -76.48 318.50 3.72 -72.76 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.23 Total: 6.67 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.72 Total: -36.52 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -1.90 Total: -91.89 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.67 Total: 48.99 kcal Total: -76.48 3.72 -72.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.971 kcal (2) G-P(sol) polarization free energy of solvation -76.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds