Wall clock time and date at job start Sun Mar 29 2020 22:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47309 * 59.99953 * 3 2 1 5 5 C 1.47198 * 109.47029 * 299.99843 * 3 2 1 6 6 N 3.43549 * 83.99712 * 321.44565 * 2 1 3 7 7 N 1.46905 * 109.47258 * 180.02562 * 3 2 1 8 8 C 1.46898 * 110.99989 * 179.87417 * 7 3 2 9 9 C 1.52997 * 109.47253 * 116.45264 * 8 7 3 10 10 C 1.52995 * 109.47182 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47119 * 299.99628 * 10 9 8 12 12 C 1.50703 * 109.47100 * 300.00029 * 11 10 9 13 13 H 1.08001 * 119.99751 * 5.15258 * 12 11 10 14 14 C 1.37878 * 119.99776 * 185.15086 * 12 11 10 15 15 N 1.31506 * 120.00180 * 8.57441 * 14 12 11 16 16 Si 1.86800 * 119.99640 * 188.56659 * 14 12 11 17 17 H 1.48504 * 109.46714 * 94.95404 * 16 14 12 18 18 H 1.48498 * 109.47229 * 214.95313 * 16 14 12 19 19 H 1.48501 * 109.47376 * 334.95796 * 16 14 12 20 20 C 1.52997 * 109.46790 * 60.00132 * 11 10 9 21 21 C 1.52995 * 109.47182 * 299.99830 * 20 11 10 22 22 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46619 * 299.99793 * 1 2 3 24 24 H 1.08992 * 109.46980 * 59.99876 * 1 2 3 25 25 H 1.09005 * 109.47182 * 240.00051 * 2 1 3 26 26 H 1.09005 * 109.47184 * 120.00050 * 2 1 3 27 27 H 1.08999 * 109.47328 * 187.77798 * 4 3 2 28 28 H 1.09000 * 109.47228 * 307.78199 * 4 3 2 29 29 H 1.09008 * 109.46656 * 67.77857 * 4 3 2 30 30 H 1.00895 * 110.99885 * 55.91602 * 7 3 2 31 31 H 1.08995 * 109.47000 * 356.44681 * 8 7 3 32 32 H 1.09006 * 109.47401 * 59.99344 * 9 8 7 33 33 H 1.09004 * 109.47135 * 300.00137 * 9 8 7 34 34 H 1.08996 * 109.47504 * 60.00009 * 10 9 8 35 35 H 1.09007 * 109.47003 * 179.97438 * 10 9 8 36 36 H 1.09005 * 109.47070 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00223 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.47593 * 59.99940 * 20 11 10 39 39 H 1.09006 * 109.46639 * 180.02562 * 20 11 10 40 40 H 1.09003 * 109.47462 * 179.97438 * 21 20 11 41 41 H 1.09002 * 109.47100 * 300.00150 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5494 2.1363 -1.2019 6 7 1.1707 2.6719 -2.1295 7 7 3.5091 1.4425 -0.0006 8 6 4.0355 2.8139 -0.0036 9 6 4.8187 3.0624 1.2869 10 6 5.3675 4.4906 1.2835 11 6 6.2942 4.6779 0.0806 12 6 7.4378 3.7005 0.1704 13 1 7.4542 2.9593 0.9558 14 6 8.4630 3.7525 -0.7501 15 7 8.5330 4.7532 -1.6005 16 14 9.7525 2.4016 -0.7891 17 1 9.3709 1.3821 -1.7992 18 1 11.0700 2.9851 -1.1480 19 1 9.8416 1.7635 0.5489 20 6 5.5110 4.4294 -1.2100 21 6 4.9622 3.0012 -1.2066 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.7754 3.2237 1.1824 28 1 0.4490 2.0449 1.3216 29 1 2.0025 1.7365 2.1338 30 1 3.8703 0.9147 -0.7810 31 1 3.2081 3.5205 -0.0684 32 1 5.6461 2.3557 1.3517 33 1 4.1586 2.9285 2.1440 34 1 4.5404 5.1975 1.2186 35 1 5.9251 4.6677 2.2032 36 1 6.6855 5.6953 0.0783 37 1 9.2540 4.7896 -2.2483 38 1 4.6839 5.1362 -1.2750 39 1 6.1714 4.5624 -2.0670 40 1 4.4038 2.8243 -2.1259 41 1 5.7893 2.2943 -1.1417 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:53 Heat of formation + Delta-G solvation = 2.256818 kcal Electronic energy + Delta-G solvation = -19278.321409 eV Core-core repulsion = 16578.116446 eV Total energy + Delta-G solvation = -2700.204963 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44378 -37.22156 -35.22975 -33.30727 -31.71697 -29.82578 -29.04869 -27.80200 -25.04237 -23.99778 -22.12501 -21.53627 -20.59093 -18.78106 -17.23116 -16.13173 -15.42667 -15.19585 -14.63945 -14.42890 -13.95484 -13.72697 -13.23456 -13.10456 -12.84710 -12.57211 -12.47115 -12.35995 -11.89446 -11.82343 -11.58355 -11.46470 -11.35317 -11.07863 -10.98867 -10.87422 -10.74181 -10.51767 -10.39571 -10.09270 -9.64910 -9.24016 -8.98223 -8.68448 -8.37478 -8.18531 -5.96577 -3.96379 2.80210 2.82938 3.32094 3.40368 3.42850 3.86510 4.20001 4.48046 4.68706 4.77643 5.11150 5.29965 5.36404 5.38545 5.45709 5.62642 5.66092 5.79479 5.81726 5.87887 6.00420 6.02058 6.15565 6.26659 6.38788 6.45893 6.50021 6.67216 6.69923 6.86411 7.00600 7.14721 7.24571 7.40468 7.47054 7.53995 7.59672 7.78125 7.94044 8.07827 8.51998 9.06990 9.65883 11.12820 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.005914 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.748272 B = 4733.375522 C = 4847.844650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C 0.209 3.791 4 C -0.141 4.141 5 C 0.180 3.820 6 N -0.434 5.434 7 N -0.659 5.659 8 C 0.088 3.912 9 C -0.088 4.088 10 C -0.109 4.109 11 C 0.042 3.958 12 C -0.501 4.501 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.881 3.119 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.097 4.097 21 C -0.117 4.117 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.347 0.653 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.049 0.951 36 H 0.030 0.970 37 H 0.258 0.742 38 H 0.015 0.985 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.042 -8.426 5.387 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C 0.114 3.886 4 C -0.200 4.200 5 C -0.140 4.140 6 N -0.110 5.110 7 N -0.289 5.289 8 C -0.020 4.020 9 C -0.126 4.126 10 C -0.147 4.147 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.709 3.291 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.136 4.136 21 C -0.155 4.155 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.166 0.834 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.427 -7.624 4.530 16.091 hybrid contribution 0.794 -0.581 -0.934 1.356 sum -12.632 -8.204 3.597 15.486 Atomic orbital electron populations 1.21909 0.95280 1.02187 1.02219 1.21565 0.95921 0.93123 1.04099 1.18959 0.89067 0.94159 0.86426 1.22012 1.01039 1.00875 0.96042 1.30847 0.93640 0.93928 0.95608 1.81135 1.08615 1.09302 1.11962 1.61059 1.02018 1.16266 1.49600 1.21734 0.96236 0.86348 0.97698 1.21396 0.98800 0.98220 0.94229 1.21583 0.97986 0.94746 1.00396 1.18698 0.92283 0.97637 0.89035 1.21148 1.04710 1.15666 1.12354 0.92402 1.24951 0.97430 0.95332 0.96208 1.69956 1.32731 1.29517 1.20798 0.86755 0.81351 0.82682 0.78299 1.20889 1.21531 1.19853 1.21387 0.97107 0.92292 1.02825 1.21853 0.98462 1.01307 0.93909 0.91983 0.91692 0.93106 0.91304 0.88865 0.91708 0.91388 0.89512 0.83354 0.93142 0.90613 0.93988 0.95166 0.93196 0.95181 0.93230 0.96596 0.90801 0.95441 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.32 37.16 0.35 -0.91 16 2 C -0.11 -0.96 5.22 -26.73 -0.14 -1.10 16 3 C 0.21 2.42 0.68 -134.39 -0.09 2.32 16 4 C -0.14 -1.45 7.94 37.16 0.29 -1.15 16 5 C 0.18 2.60 11.36 -20.76 -0.24 2.37 16 6 N -0.43 -7.39 18.54 42.15 0.78 -6.61 16 7 N -0.66 -8.97 6.01 -95.88 -0.58 -9.55 16 8 C 0.09 1.48 1.53 -67.71 -0.10 1.38 16 9 C -0.09 -1.56 5.30 -26.74 -0.14 -1.71 16 10 C -0.11 -2.19 5.42 -26.73 -0.14 -2.33 16 11 C 0.04 1.01 2.45 -91.77 -0.23 0.79 16 12 C -0.50 -13.02 6.64 -34.44 -0.23 -13.25 16 13 H 0.06 1.49 6.54 -52.49 -0.34 1.15 16 14 C 0.06 1.67 5.22 -17.82 -0.09 1.58 16 15 N -0.89 -25.41 12.09 55.43 0.67 -24.74 16 16 Si 0.88 20.94 29.55 -169.99 -5.02 15.92 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.10 -2.26 5.29 -26.74 -0.14 -2.40 16 21 C -0.12 -2.35 4.79 -26.73 -0.13 -2.47 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.45 6.26 -51.93 -0.33 0.13 16 24 H 0.05 0.48 7.23 -51.93 -0.38 0.10 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.76 6.73 -51.93 -0.35 0.41 16 28 H 0.07 0.57 6.05 -51.93 -0.31 0.25 16 29 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.35 4.67 8.07 -39.29 -0.32 4.35 16 31 H 0.05 0.88 5.54 -51.93 -0.29 0.59 16 32 H 0.08 1.48 6.52 -51.93 -0.34 1.14 16 33 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.03 0.82 8.10 -51.93 -0.42 0.39 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 1.93 6.84 -51.93 -0.36 1.58 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.74 7.22 -51.93 -0.37 1.37 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -28.72 315.26 -7.16 -35.89 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.74 Total: 1.22 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.03 Total: -16.89 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.88 Total: -40.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.72 -7.16 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.143 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds