Wall clock time and date at job start Sun Mar 29 2020 23:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00319 * 2 1 4 4 H 1.48505 * 109.46959 * 239.99977 * 3 2 1 5 5 H 1.48494 * 109.46674 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47278 * 120.00028 * 3 2 1 7 7 C 1.37885 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99743 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99918 * 0.02562 * 7 2 1 10 10 O 1.42107 * 106.40285 * 66.45789 * 9 7 2 11 11 O 1.42098 * 106.40165 * 293.53876 * 9 7 2 12 12 N 1.65598 * 107.21718 * 179.97438 * 9 7 2 13 13 C 1.46855 * 120.37931 * 90.00163 * 12 9 7 14 14 C 1.53398 * 108.77720 * 237.64219 * 13 12 9 15 15 C 1.51296 * 108.45274 * 310.55525 * 14 13 12 16 16 O 1.20761 * 120.80854 * 232.95970 * 15 14 13 17 17 C 1.51368 * 118.34079 * 52.94144 * 15 14 13 18 18 H 1.09007 * 109.66428 * 66.80176 * 17 15 14 19 19 F 1.39897 * 109.69351 * 187.30609 * 17 15 14 20 20 C 1.46855 * 120.38318 * 270.02469 * 12 9 7 21 21 H 0.97000 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.59063 * 117.85262 * 13 12 9 23 23 H 1.09002 * 109.70535 * 357.50189 * 13 12 9 24 24 H 1.09002 * 109.67456 * 70.30808 * 14 13 12 25 25 H 1.09004 * 109.67479 * 190.80678 * 14 13 12 26 26 H 1.09008 * 109.58768 * 242.14376 * 20 12 9 27 27 H 1.08994 * 109.58632 * 2.42399 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 2.7526 -4.4806 1.2674 14 6 4.2781 -4.3228 1.3004 15 6 4.8427 -4.8546 0.0014 16 8 5.7212 -5.6832 0.0021 17 6 4.2786 -4.3225 -1.2986 18 1 4.5364 -3.2688 -1.4063 19 9 4.8045 -5.0482 -2.3728 20 6 2.7531 -4.4802 -1.2663 21 1 -0.4850 0.8401 -0.0004 22 1 2.4929 -5.5367 1.3401 23 1 2.3110 -3.9375 2.1030 24 1 4.5358 -3.2692 1.4085 25 1 4.6876 -4.8884 2.1373 26 1 2.4934 -5.5364 -1.3393 27 1 2.3096 -3.9365 -2.1004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963942.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:17 Heat of formation + Delta-G solvation = -175.169722 kcal Electronic energy + Delta-G solvation = -17271.698804 eV Core-core repulsion = 14070.565750 eV Total energy + Delta-G solvation = -3201.133054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 251.046 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.68012 -39.46663 -36.65645 -35.51559 -34.15667 -33.21663 -31.04160 -29.89410 -26.27355 -23.72497 -23.27746 -20.00745 -18.61565 -17.75622 -16.60042 -16.36534 -16.22523 -15.83689 -15.31537 -15.09332 -14.51648 -14.01390 -13.86730 -13.55702 -13.07926 -12.85462 -12.29260 -12.18483 -11.92636 -11.62978 -11.29791 -11.27986 -11.19037 -10.71822 -10.47960 -10.42169 -10.35199 -9.39293 -9.35415 -9.16192 -8.60060 -6.82610 -5.47350 1.79171 1.98004 3.00210 3.06011 3.09847 3.73234 3.90306 4.17618 4.48177 4.54528 4.71065 4.96149 5.05582 5.23039 5.24326 5.56392 5.63890 5.71727 5.81364 5.90607 6.01298 6.16171 6.39498 7.18693 7.22695 7.34934 7.80150 8.75527 10.11340 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.008808 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.390595 B = 3178.260093 C = 3437.554137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.134 3.866 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.102 0.898 9 S 2.710 3.290 10 O -0.997 6.997 11 O -0.996 6.996 12 N -1.011 6.011 13 C 0.128 3.872 14 C -0.182 4.182 15 C 0.346 3.654 16 O -0.444 6.444 17 C 0.028 3.972 18 H 0.126 0.874 19 F -0.194 7.194 20 C 0.111 3.889 21 H 0.293 0.707 22 H 0.070 0.930 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -4.509 1.017 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.811 3.189 10 O -0.987 6.987 11 O -0.986 6.986 12 N -0.844 5.844 13 C 0.001 3.999 14 C -0.221 4.221 15 C 0.220 3.780 16 O -0.316 6.316 17 C -0.011 4.011 18 H 0.144 0.856 19 F -0.175 7.175 20 C -0.016 4.016 21 H 0.104 0.896 22 H 0.088 0.912 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.140 -5.070 0.996 8.025 hybrid contribution 1.070 1.287 -0.103 1.677 sum 7.209 -3.783 0.892 8.191 Atomic orbital electron populations 1.69874 1.06796 1.31084 1.39437 1.24743 0.94478 1.00812 0.88430 0.86196 0.79917 0.79653 0.79828 1.18804 1.20039 1.18801 1.30513 1.05980 1.11534 1.67517 0.87937 1.00809 0.72159 0.72915 0.73022 1.93374 1.72414 1.87368 1.45569 1.93370 1.72307 1.87377 1.45561 1.58389 1.61980 1.55198 1.08855 1.21289 0.90784 1.00439 0.87363 1.22773 0.98368 1.04880 0.96100 1.25365 0.80111 0.79506 0.93015 1.90411 1.25131 1.26332 1.89751 1.22765 0.96607 0.97960 0.83738 0.85646 1.92843 1.87869 1.80035 1.56704 1.21717 0.89530 1.01747 0.88630 0.89634 0.91211 0.87001 0.86952 0.88019 0.90303 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.35 13.19 55.43 0.73 -22.62 15 2 C 0.13 3.48 5.46 -17.82 -0.10 3.38 15 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.18 15 4 H -0.26 -5.33 7.11 56.52 0.40 -4.92 15 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 15 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 7 C -1.02 -25.43 9.75 30.60 0.30 -25.13 15 8 H 0.10 2.25 7.81 -52.49 -0.41 1.84 15 9 S 2.71 65.22 4.97 -107.50 -0.53 64.68 15 10 O -1.00 -26.76 16.65 -57.17 -0.95 -27.72 15 11 O -1.00 -26.47 16.66 -57.17 -0.95 -27.42 15 12 N -1.01 -17.94 3.22 -113.39 -0.37 -18.30 15 13 C 0.13 1.84 6.41 -3.64 -0.02 1.82 15 14 C -0.18 -2.26 6.34 -27.38 -0.17 -2.43 15 15 C 0.35 5.04 6.65 -28.41 -0.19 4.85 15 16 O -0.44 -7.58 17.47 6.00 0.10 -7.48 15 17 C 0.03 0.41 4.33 -27.35 -0.12 0.29 15 18 H 0.13 1.64 8.14 -51.92 -0.42 1.21 15 19 F -0.19 -3.08 16.78 2.25 0.04 -3.04 15 20 C 0.11 1.74 6.17 -3.64 -0.02 1.72 15 21 H 0.29 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.11 1.67 7.02 -51.93 -0.36 1.30 15 24 H 0.11 1.30 8.14 -51.93 -0.42 0.87 15 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.08 1.10 8.14 -51.92 -0.42 0.67 15 27 H 0.12 1.92 7.01 -51.93 -0.36 1.55 15 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -32.99 255.78 -5.81 -38.80 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.39 Total: 0.55 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.33 Total: -15.50 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.37 Total: -40.92 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -1.80 Total: -62.61 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -0.53 Total: 64.68 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.99 -5.81 -38.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963942.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.368 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds