Wall clock time and date at job start Sun Mar 29 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47313 * 270.00118 * 3 2 1 5 5 H 1.48503 * 109.46747 * 30.00039 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99592 * 3 2 1 7 7 C 1.37878 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99891 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00109 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40275 * 71.19435 * 9 7 2 11 11 O 1.42100 * 106.39724 * 298.28057 * 9 7 2 12 12 N 1.65595 * 107.21679 * 184.73889 * 9 7 2 13 13 C 1.46501 * 119.99869 * 294.60174 * 12 9 7 14 14 H 1.08999 * 109.16935 * 23.95007 * 13 12 9 15 15 C 1.52968 * 109.24616 * 143.35631 * 13 12 9 16 16 C 1.54026 * 106.94220 * 156.43295 * 15 13 12 17 17 S 1.81916 * 104.39328 * 327.17371 * 16 15 13 18 18 C 1.50536 * 109.29442 * 264.49760 * 13 12 9 19 19 O 1.21331 * 125.73829 * 37.91287 * 18 13 12 20 20 H 0.97004 * 120.00057 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99874 * 114.61424 * 12 9 7 22 22 H 1.09001 * 109.97158 * 37.05179 * 15 13 12 23 23 H 1.08995 * 109.97348 * 275.81916 * 15 13 12 24 24 H 1.09002 * 110.44746 * 85.90276 * 16 15 13 25 25 H 1.08998 * 110.45066 * 208.32408 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.5428 -2.8481 -1.2901 11 8 0.3631 -2.7442 1.2007 12 7 2.2435 -3.9327 0.1319 13 6 3.2091 -4.1579 -0.9466 14 1 3.3342 -3.2354 -1.5134 15 6 4.5542 -4.5648 -0.3423 16 6 5.3170 -5.3451 -1.4293 17 16 4.0160 -6.2060 -2.3650 18 6 2.6912 -5.2360 -1.8607 19 8 1.5331 -5.3928 -2.1868 20 1 -0.4850 0.8401 -0.0004 21 1 2.2601 -4.4939 0.9229 22 1 4.3940 -5.2000 0.5289 23 1 5.1178 -3.6767 -0.0566 24 1 5.8625 -4.6597 -2.0780 25 1 5.9999 -6.0627 -0.9746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994372.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:28 Heat of formation + Delta-G solvation = -126.585108 kcal Electronic energy + Delta-G solvation = -14884.561071 eV Core-core repulsion = 12115.914885 eV Total energy + Delta-G solvation = -2768.646186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.012 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13374 -36.32612 -35.20319 -33.97419 -33.17558 -32.08260 -26.94921 -26.21691 -24.00368 -21.02925 -19.23723 -17.68147 -17.33721 -16.62574 -16.04558 -15.84294 -14.92277 -14.33101 -14.07774 -14.01907 -13.78776 -13.33734 -13.04030 -12.57447 -12.07408 -11.35393 -11.29578 -11.26407 -10.82530 -10.66714 -10.53774 -10.30761 -10.20278 -10.07190 -9.31007 -8.93456 -8.49758 -8.42953 -6.76013 -5.40519 1.38154 1.75500 2.01697 2.30017 3.02030 3.09277 3.13884 3.96468 4.11908 4.46088 4.58808 4.69925 4.78142 4.84096 5.19050 5.37905 5.66119 5.73376 5.78278 6.26372 6.63394 7.19763 7.24071 7.65259 7.86152 8.81307 10.18167 Molecular weight = 251.01amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.008126 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.391664 B = 3444.766042 C = 3847.945624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.023 5.023 8 H 0.102 0.898 9 S 2.704 3.296 10 O -0.990 6.990 11 O -0.998 6.998 12 N -1.115 6.115 13 C 0.105 3.895 14 H 0.131 0.869 15 C -0.126 4.126 16 C -0.087 4.087 17 S -0.211 6.211 18 C 0.350 3.650 19 O -0.370 6.370 20 H 0.292 0.708 21 H 0.407 0.593 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.013 -6.740 -0.612 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.157 5.157 8 H 0.120 0.880 9 S 2.804 3.196 10 O -0.980 6.980 11 O -0.989 6.989 12 N -0.868 5.868 13 C -0.013 4.013 14 H 0.149 0.851 15 C -0.166 4.166 16 C -0.236 4.236 17 S 0.020 5.980 18 C 0.110 3.890 19 O -0.242 6.242 20 H 0.102 0.898 21 H 0.238 0.762 22 H 0.111 0.889 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.275 -7.742 -1.771 13.791 hybrid contribution 0.910 2.009 1.122 2.474 sum 12.184 -5.733 -0.649 13.481 Atomic orbital electron populations 1.69905 1.06815 1.30858 1.39425 1.24757 0.94487 1.00852 0.88532 0.86142 0.80092 0.80004 0.79194 1.19144 1.19917 1.18658 1.30520 1.05934 1.11743 1.67474 0.87987 1.00909 0.72220 0.73217 0.73265 1.93428 1.75369 1.86878 1.42343 1.93382 1.68928 1.87459 1.49093 1.56225 1.51490 1.52957 1.26142 1.21797 0.89743 1.00034 0.89756 0.85127 1.22320 0.93800 1.02303 0.98143 1.24051 0.98094 1.02049 0.99364 1.86136 1.07241 1.44347 1.60284 1.26522 0.93011 0.86667 0.82765 1.90690 1.18136 1.65130 1.50227 0.89764 0.76196 0.88940 0.87341 0.87525 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.49 13.11 55.43 0.73 -23.76 15 2 C 0.13 3.60 5.46 -17.82 -0.10 3.51 15 3 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 7 C -1.02 -26.98 9.60 30.60 0.29 -26.69 15 8 H 0.10 2.36 7.81 -52.49 -0.41 1.95 15 9 S 2.70 70.89 4.94 -107.50 -0.53 70.36 15 10 O -0.99 -29.26 16.98 -61.10 -1.04 -30.30 15 11 O -1.00 -29.20 17.92 -57.17 -1.02 -30.22 15 12 N -1.12 -21.20 5.37 -5.96 -0.03 -21.23 15 13 C 0.11 1.68 3.03 -69.18 -0.21 1.47 15 14 H 0.13 2.12 7.84 -51.93 -0.41 1.71 15 15 C -0.13 -1.27 6.21 -26.21 -0.16 -1.44 15 16 C -0.09 -0.73 7.22 37.69 0.27 -0.46 15 17 S -0.21 -2.77 22.85 -107.50 -2.46 -5.22 15 18 C 0.35 6.20 7.46 35.93 0.27 6.47 15 19 O -0.37 -8.28 17.16 0.67 0.01 -8.27 15 20 H 0.29 7.63 8.31 -40.82 -0.34 7.29 15 21 H 0.41 6.50 8.69 -34.46 -0.30 6.20 15 22 H 0.09 0.82 7.93 -51.93 -0.41 0.41 15 23 H 0.11 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.11 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.11 0.68 8.14 -51.93 -0.42 0.25 15 LS Contribution 253.17 15.07 3.82 3.82 Total: -1.00 -36.86 253.17 -7.12 -43.98 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -1.93 Total: 3.15 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 0.36 Total: -17.14 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.69 Total: -45.00 kcal Atomic # 8 Polarization: -66.74 SS G_CDS: -2.05 Total: -68.79 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 68.12 SS G_CDS: -2.99 Total: 65.13 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -36.86 -7.12 -43.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994372.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.608 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds