Wall clock time and date at job start Sun Mar 29 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48502 * 109.47313 * 270.00118 * 3 2 1 5 5 H 1.48503 * 109.46747 * 30.00039 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99592 * 3 2 1 7 7 C 1.37878 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99891 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00109 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40275 * 71.19435 * 9 7 2 11 11 O 1.42100 * 106.39724 * 298.28057 * 9 7 2 12 12 N 1.65595 * 107.21679 * 184.73889 * 9 7 2 13 13 C 1.46501 * 119.99869 * 294.60174 * 12 9 7 14 14 H 1.08999 * 109.16935 * 23.95007 * 13 12 9 15 15 C 1.52968 * 109.24616 * 143.35631 * 13 12 9 16 16 C 1.54026 * 106.94220 * 156.43295 * 15 13 12 17 17 S 1.81916 * 104.39328 * 327.17371 * 16 15 13 18 18 C 1.50536 * 109.29442 * 264.49760 * 13 12 9 19 19 O 1.21331 * 125.73829 * 37.91287 * 18 13 12 20 20 H 0.97004 * 120.00057 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99874 * 114.61424 * 12 9 7 22 22 H 1.09001 * 109.97158 * 37.05179 * 15 13 12 23 23 H 1.08995 * 109.97348 * 275.81916 * 15 13 12 24 24 H 1.09002 * 110.44746 * 85.90276 * 16 15 13 25 25 H 1.08998 * 110.45066 * 208.32408 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.5428 -2.8481 -1.2901 11 8 0.3631 -2.7442 1.2007 12 7 2.2435 -3.9327 0.1319 13 6 3.2091 -4.1579 -0.9466 14 1 3.3342 -3.2354 -1.5134 15 6 4.5542 -4.5648 -0.3423 16 6 5.3170 -5.3451 -1.4293 17 16 4.0160 -6.2060 -2.3650 18 6 2.6912 -5.2360 -1.8607 19 8 1.5331 -5.3928 -2.1868 20 1 -0.4850 0.8401 -0.0004 21 1 2.2601 -4.4939 0.9229 22 1 4.3940 -5.2000 0.5289 23 1 5.1178 -3.6767 -0.0566 24 1 5.8625 -4.6597 -2.0780 25 1 5.9999 -6.0627 -0.9746 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994372.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:28 Heat of formation + Delta-G solvation = -158.301138 kcal Electronic energy + Delta-G solvation = -14885.936381 eV Core-core repulsion = 12115.914885 eV Total energy + Delta-G solvation = -2770.021496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.012 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49251 -37.62268 -37.33091 -36.15072 -35.20750 -33.32748 -28.30081 -28.15760 -25.00638 -22.22179 -21.18360 -19.49114 -18.59172 -18.41578 -17.66522 -17.21856 -16.75579 -15.93651 -15.66624 -15.52419 -15.14840 -14.57694 -14.11060 -13.97346 -13.71337 -13.30646 -13.00290 -12.51847 -12.46220 -12.39769 -12.27399 -12.17295 -11.82420 -11.48341 -11.25134 -10.89096 -9.95674 -9.47594 -8.76045 -7.51310 0.11389 0.37721 0.52391 1.11818 1.36580 1.37687 1.53625 2.20776 2.58037 2.78183 3.14690 3.57769 3.81299 3.84756 3.90475 4.25484 4.42476 4.74228 4.80151 4.96591 5.09083 5.26819 5.86298 5.93329 6.20711 6.76203 8.20658 Molecular weight = 251.01amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.008126 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.391664 B = 3444.766042 C = 3847.945624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.238 1.238 7 C -1.033 5.033 8 H 0.134 0.866 9 S 2.705 3.295 10 O -1.038 7.038 11 O -1.042 7.042 12 N -1.102 6.102 13 C 0.090 3.910 14 H 0.124 0.876 15 C -0.116 4.116 16 C -0.073 4.073 17 S -0.191 6.191 18 C 0.327 3.673 19 O -0.442 6.442 20 H 0.298 0.702 21 H 0.420 0.580 22 H 0.110 0.890 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.258 -6.314 -0.160 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.148 4.148 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.160 1.160 7 C -1.167 5.167 8 H 0.152 0.848 9 S 2.807 3.193 10 O -1.027 7.027 11 O -1.032 7.032 12 N -0.860 5.860 13 C -0.027 4.027 14 H 0.142 0.858 15 C -0.156 4.156 16 C -0.221 4.221 17 S 0.041 5.959 18 C 0.092 3.908 19 O -0.320 6.320 20 H 0.108 0.892 21 H 0.255 0.745 22 H 0.128 0.872 23 H 0.155 0.845 24 H 0.152 0.848 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.567 -7.363 -1.306 17.270 hybrid contribution -0.278 1.748 0.957 2.012 sum 15.289 -5.615 -0.349 16.291 Atomic orbital electron populations 1.70034 1.09140 1.32393 1.41231 1.26149 0.95358 1.05772 0.87495 0.85030 0.79303 0.74193 0.79999 1.18008 1.19315 1.16027 1.30824 1.07536 1.11485 1.66849 0.84843 1.00428 0.72882 0.74330 0.71698 1.93370 1.77343 1.87814 1.44177 1.93310 1.71231 1.88439 1.50264 1.55438 1.51176 1.51680 1.27726 1.22341 0.91692 0.99800 0.88910 0.85831 1.22398 0.90271 1.04152 0.98769 1.24420 0.96403 1.02745 0.98551 1.86059 1.06356 1.43095 1.60368 1.27078 0.93282 0.87740 0.82688 1.90663 1.21038 1.67530 1.52730 0.89181 0.74463 0.87205 0.84458 0.84822 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.62 13.11 21.45 0.28 -53.34 15 2 C 0.07 3.52 5.46 84.65 0.46 3.99 15 3 Si 1.00 39.41 29.54 68.60 2.03 41.43 15 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 6 H -0.24 -8.37 7.11 99.48 0.71 -7.66 15 7 C -1.03 -54.09 9.60 67.73 0.65 -53.44 15 8 H 0.13 5.87 7.81 -2.91 -0.02 5.84 15 9 S 2.70 146.23 4.94 -56.49 -0.28 145.95 15 10 O -1.04 -64.56 16.98 -124.24 -2.11 -66.67 15 11 O -1.04 -63.47 17.92 -128.00 -2.29 -65.76 15 12 N -1.10 -41.87 5.37 -172.78 -0.93 -42.80 15 13 C 0.09 2.74 3.03 44.18 0.13 2.87 15 14 H 0.12 3.91 7.84 -2.39 -0.02 3.89 15 15 C -0.12 -1.83 6.21 30.93 0.19 -1.63 15 16 C -0.07 -0.83 7.22 72.33 0.52 -0.31 15 17 S -0.19 -4.55 22.85 -56.49 -1.29 -5.84 15 18 C 0.33 11.64 7.46 71.18 0.53 12.17 15 19 O -0.44 -20.88 17.16 1.45 0.02 -20.86 15 20 H 0.30 16.04 8.31 -92.71 -0.77 15.27 15 21 H 0.42 13.31 8.69 -96.75 -0.84 12.46 15 22 H 0.11 1.41 7.93 -2.39 -0.02 1.39 15 23 H 0.14 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.13 0.95 8.14 -2.39 -0.02 0.93 15 25 H 0.16 0.71 8.14 -2.39 -0.02 0.69 15 Total: -1.00 -86.66 253.17 -1.69 -88.35 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.39 Total: 15.89 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 2.49 Total: -36.34 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -0.65 Total: -96.14 kcal Atomic # 8 Polarization: -148.91 SS G_CDS: -4.38 Total: -153.29 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 16 Polarization: 141.68 SS G_CDS: -1.57 Total: 140.11 kcal Total: -86.66 -1.69 -88.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994372.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.952 kcal (2) G-P(sol) polarization free energy of solvation -86.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds