Wall clock time and date at job start Sun Mar 29 2020 22:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99386 * 2 1 4 4 C 1.50693 * 120.00120 * 180.27507 * 2 1 3 5 5 H 1.08991 * 109.64423 * 359.72468 * 4 2 1 6 6 C 1.53023 * 109.64361 * 120.14900 * 4 2 1 7 7 C 1.50067 * 110.15137 * 169.11578 * 6 4 2 8 8 C 1.29444 * 124.07411 * 342.86871 * 7 6 4 9 9 C 1.50702 * 117.96612 * 180.46281 * 8 7 6 10 10 C 1.50076 * 124.07614 * 0.49290 * 8 7 6 11 11 H 1.09003 * 109.35520 * 222.63867 * 10 8 7 12 12 O 1.42894 * 109.36089 * 102.91260 * 10 8 7 13 13 C 1.42898 * 114.00282 * 89.99922 * 12 10 8 14 14 C 1.52995 * 109.47705 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47555 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99830 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00560 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99531 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00508 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46935 * 59.99728 * 19 17 15 21 21 H 1.48494 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46788 * 299.99922 * 19 17 15 23 23 C 1.52980 * 110.28378 * 342.97507 * 10 8 7 24 24 H 1.08002 * 119.99341 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00417 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47015 * 90.00090 * 3 2 1 27 27 H 1.09000 * 109.46646 * 209.99242 * 3 2 1 28 28 H 1.09000 * 109.47248 * 329.99960 * 3 2 1 29 29 H 1.08998 * 109.35640 * 289.32402 * 6 4 2 30 30 H 1.08999 * 109.35763 * 48.90755 * 6 4 2 31 31 H 1.07992 * 117.96766 * 162.84332 * 7 6 4 32 32 H 1.09001 * 109.46338 * 0.02562 * 9 8 7 33 33 H 1.08999 * 109.47017 * 119.99986 * 9 8 7 34 34 H 1.08991 * 109.47594 * 240.00561 * 9 8 7 35 35 H 1.09007 * 109.47145 * 300.00423 * 13 12 10 36 36 H 1.09005 * 109.46956 * 59.99885 * 13 12 10 37 37 H 1.08999 * 109.47091 * 300.00090 * 14 13 12 38 38 H 1.08997 * 109.47318 * 59.99890 * 14 13 12 39 39 H 0.97000 * 119.99680 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47050 * 289.53991 * 23 10 8 41 41 H 1.09000 * 109.78585 * 168.92505 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0063 5 1 1.3578 -2.1356 -0.0053 6 6 2.9476 -1.3826 -1.2529 7 6 3.8947 -2.5415 -1.1437 8 6 4.1720 -3.1495 -0.0351 9 6 5.1528 -4.2927 -0.0823 10 6 3.5771 -2.7872 1.2942 11 1 4.3562 -2.8075 2.0563 12 8 2.5600 -3.7326 1.6315 13 6 3.0359 -4.8600 2.3693 14 6 1.8682 -5.8007 2.6732 15 6 2.3700 -6.9893 3.4517 16 1 3.4171 -7.0660 3.7049 17 6 1.4922 -7.9785 3.8418 18 7 0.2170 -7.8848 3.5339 19 14 2.1142 -9.4516 4.8075 20 1 2.7213 -8.9881 6.0810 21 1 0.9807 -10.3645 5.1023 22 1 3.1351 -10.1734 4.0063 23 6 2.9600 -1.3887 1.2357 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 2.2450 1.6199 1.0277 27 1 3.0159 1.1749 -0.5137 28 1 1.4743 2.0648 -0.5138 29 1 2.3191 -1.5114 -2.1340 30 1 3.5172 -0.4584 -1.3499 31 1 4.3744 -2.8903 -2.0462 32 1 5.4953 -4.4353 -1.1072 33 1 6.0058 -4.0662 0.5574 34 1 4.6670 -5.2030 0.2688 35 1 3.7849 -5.3897 1.7805 36 1 3.4822 -4.5205 3.3040 37 1 1.1189 -5.2713 3.2618 38 1 1.4223 -6.1402 1.7383 39 1 -0.4006 -8.5805 3.8087 40 1 3.7531 -0.6442 1.1659 41 1 2.3638 -1.2107 2.1306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:16 Heat of formation + Delta-G solvation = -42.046338 kcal Electronic energy + Delta-G solvation = -18501.346361 eV Core-core repulsion = 15766.927518 eV Total energy + Delta-G solvation = -2734.418843 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.167 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.54571 -36.81155 -34.98447 -33.14666 -31.56887 -30.38994 -29.04612 -27.41608 -26.23508 -24.43014 -22.88317 -21.81814 -20.80711 -18.46873 -17.73499 -16.35740 -15.80121 -15.22393 -14.89591 -14.67023 -14.50294 -14.04473 -13.77864 -13.24687 -13.08852 -12.83822 -12.62159 -12.59955 -12.17686 -12.13042 -11.77315 -11.52921 -11.45715 -11.06788 -10.89940 -10.70808 -10.69934 -10.42884 -10.21280 -9.95968 -9.48873 -9.19104 -8.98866 -8.83524 -8.55031 -8.31959 -6.01506 -4.05181 2.26041 2.37461 3.32766 3.37056 3.39160 4.34987 4.56076 4.70527 4.81401 4.91140 5.10253 5.21380 5.28929 5.34351 5.43414 5.49301 5.56387 5.61693 5.68564 5.72468 5.83460 5.85098 5.89420 5.90953 6.02187 6.05034 6.12590 6.30842 6.32503 6.44280 6.47922 6.70403 6.77733 6.93264 6.97664 7.15712 7.58129 7.81916 7.85722 8.15125 8.38301 9.01303 9.58359 11.10081 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.004634 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.801194 B = 6040.593040 C = 6660.700176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.052 4.052 5 H 0.089 0.911 6 C -0.079 4.079 7 C -0.151 4.151 8 C -0.136 4.136 9 C -0.128 4.128 10 C 0.124 3.876 11 H 0.061 0.939 12 O -0.375 6.375 13 C 0.064 3.936 14 C 0.026 3.974 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.103 4.103 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 15.753 -8.519 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.118 4.118 3 C -0.176 4.176 4 C -0.070 4.070 5 H 0.107 0.893 6 C -0.115 4.115 7 C -0.170 4.170 8 C -0.137 4.137 9 C -0.184 4.184 10 C 0.065 3.935 11 H 0.078 0.922 12 O -0.294 6.294 13 C -0.012 4.012 14 C -0.011 4.011 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.141 4.141 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.277 15.671 -8.551 18.924 hybrid contribution 0.546 -1.011 0.573 1.284 sum 6.824 14.660 -7.978 18.031 Atomic orbital electron populations 1.23725 0.95278 1.01792 1.02623 1.21735 0.95288 0.95417 0.99406 1.20869 1.00201 0.94567 1.01969 1.20315 0.97024 0.95074 0.94584 0.89271 1.20447 0.96417 0.96794 0.97891 1.21883 0.99777 0.98298 0.97014 1.21409 0.98418 0.97681 0.96151 1.21115 0.97765 0.97710 1.01819 1.20686 0.90604 0.89687 0.92491 0.92154 1.88032 1.32844 1.33687 1.74877 1.23030 0.99678 0.86009 0.92459 1.19047 0.92500 0.92235 0.97295 1.21020 0.94623 1.05186 1.35401 0.92668 1.24990 0.94830 0.98297 0.96105 1.69978 1.02503 1.34289 1.46200 0.86602 0.78296 0.82345 0.80435 1.20176 1.21180 1.20187 1.21695 0.98964 0.94900 0.98517 0.88231 0.88824 0.91586 0.91805 0.92186 0.91256 0.91026 0.88099 0.92401 0.92033 0.90532 0.94291 0.94876 0.95859 0.95845 0.92821 0.91180 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 13.91 29.01 0.40 -1.89 16 2 C -0.12 -1.37 4.89 -101.07 -0.49 -1.87 16 3 C -0.12 -1.10 9.55 36.01 0.34 -0.75 16 4 C -0.05 -0.69 2.39 -91.56 -0.22 -0.91 16 5 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 6 C -0.08 -0.93 5.40 -28.18 -0.15 -1.08 16 7 C -0.15 -1.99 9.41 -35.90 -0.34 -2.33 16 8 C -0.14 -2.01 5.43 -100.94 -0.55 -2.56 16 9 C -0.13 -1.77 9.61 36.01 0.35 -1.42 16 10 C 0.12 1.98 2.67 -28.19 -0.08 1.91 16 11 H 0.06 0.93 7.78 -51.93 -0.40 0.52 16 12 O -0.37 -7.69 9.54 -35.23 -0.34 -8.03 16 13 C 0.06 1.41 5.63 37.15 0.21 1.62 16 14 C 0.03 0.72 5.34 -27.89 -0.15 0.57 16 15 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 19 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.10 -1.42 4.72 -26.54 -0.13 -1.54 16 24 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 25 H 0.09 0.93 8.04 -52.49 -0.42 0.51 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 28 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.73 6.42 -51.93 -0.33 0.40 16 31 H 0.10 1.19 7.56 -52.49 -0.40 0.79 16 32 H 0.06 0.70 7.56 -51.93 -0.39 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.22 5.98 -51.93 -0.31 0.91 16 35 H 0.04 0.83 5.56 -51.92 -0.29 0.54 16 36 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.07 0.81 8.00 -51.93 -0.42 0.40 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -30.56 326.85 -7.91 -38.48 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.01 Total: -1.64 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -1.21 Total: -24.00 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.34 Total: -8.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.56 -7.91 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.569 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds