Wall clock time and date at job start Sun Mar 29 2020 23:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00499 * 2 1 4 4 H 1.48495 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46692 * 300.00318 * 3 2 1 6 6 H 1.48494 * 109.46820 * 59.99850 * 3 2 1 7 7 C 1.37880 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47435 * 180.02562 * 9 7 2 11 11 S 1.65600 * 120.00131 * 165.00265 * 10 9 7 12 12 O 1.42105 * 104.27450 * 308.92532 * 11 10 9 13 13 O 1.42097 * 104.27686 * 181.07056 * 11 10 9 14 14 C 1.81393 * 104.45003 * 64.99744 * 11 10 9 15 15 H 1.08995 * 110.56655 * 62.32201 * 14 11 10 16 16 C 1.54479 * 110.51380 * 299.64346 * 14 11 10 17 17 O 1.44433 * 104.80518 * 217.37819 * 16 14 11 18 18 C 1.44422 * 105.27452 * 40.51075 * 17 16 14 19 19 C 1.54481 * 104.80535 * 319.49061 * 18 17 16 20 20 H 1.08994 * 110.51524 * 142.62314 * 19 18 17 21 21 O 1.42907 * 110.62848 * 265.27882 * 19 18 17 22 22 H 0.96997 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46993 * 59.99852 * 9 7 2 24 24 H 1.09002 * 109.46982 * 300.00253 * 9 7 2 25 25 H 0.97000 * 119.99655 * 344.99452 * 10 9 7 26 26 H 1.08997 * 110.37024 * 336.20813 * 16 14 11 27 27 H 1.08995 * 110.37315 * 98.54444 * 16 14 11 28 28 H 1.08995 * 110.37333 * 200.65712 * 18 17 16 29 29 H 1.09001 * 110.37394 * 78.31441 * 18 17 16 30 30 H 0.96703 * 113.99466 * 294.70984 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 16 1.6879 -5.1423 0.3706 12 8 0.9851 -4.9878 1.5960 13 8 2.8642 -5.9359 0.2958 14 6 0.5436 -5.5724 -0.9696 15 1 1.0637 -5.5863 -1.9274 16 6 -0.6395 -4.5800 -1.0106 17 8 -1.7868 -5.3875 -1.3536 18 6 -1.6290 -6.6111 -0.6029 19 6 -0.1223 -6.9394 -0.6952 20 1 0.2360 -7.3567 0.2458 21 8 0.1307 -7.8446 -1.7716 22 1 -0.4850 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8897 25 1 3.1347 -3.4542 -0.2180 26 1 -0.7800 -4.1165 -0.0341 27 1 -0.4700 -3.8187 -1.7720 28 1 -2.2196 -7.4101 -1.0510 29 1 -1.9212 -6.4591 0.4362 30 1 -0.2647 -8.7189 -1.6514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211689148.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:43 Heat of formation + Delta-G solvation = -163.155988 kcal Electronic energy + Delta-G solvation = -17415.708406 eV Core-core repulsion = 14338.556612 eV Total energy + Delta-G solvation = -3077.151794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65251 -36.81654 -36.20920 -35.62980 -34.79046 -32.25008 -31.50209 -28.73973 -26.82871 -23.52427 -22.48549 -21.80177 -19.03016 -18.20968 -17.31020 -16.88818 -16.47731 -15.90407 -15.60115 -15.18162 -14.93557 -14.62714 -13.63502 -13.50345 -13.11081 -12.83838 -12.29230 -12.20527 -12.07657 -11.91101 -11.74746 -11.65997 -11.32246 -11.00387 -10.77620 -10.51645 -10.42239 -10.16062 -9.72671 -9.45349 -8.96811 -8.30300 -6.23673 -4.28321 0.55583 3.13890 3.22056 3.30298 3.34355 3.73175 3.75151 4.16055 4.19201 4.30741 4.45147 4.60010 4.83696 5.09385 5.14793 5.20425 5.38524 5.47084 5.77879 5.87599 6.30530 6.58623 7.14920 7.22636 7.34188 7.70610 7.74231 8.09851 8.75659 9.37267 10.86607 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.006934 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.428830 B = 4036.922216 C = 4562.666947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.236 3.764 10 N -1.101 6.101 11 S 2.619 3.381 12 O -0.950 6.950 13 O -0.969 6.969 14 C -0.640 4.640 15 H 0.158 0.842 16 C 0.073 3.927 17 O -0.358 6.358 18 C 0.015 3.985 19 C 0.103 3.897 20 H 0.071 0.929 21 O -0.548 6.548 22 H 0.266 0.734 23 H 0.027 0.973 24 H 0.041 0.959 25 H 0.412 0.588 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -12.138 -1.941 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.113 3.887 10 N -0.863 5.863 11 S 2.707 3.293 12 O -0.940 6.940 13 O -0.959 6.959 14 C -0.745 4.745 15 H 0.176 0.824 16 C -0.004 4.004 17 O -0.276 6.276 18 C -0.063 4.063 19 C 0.042 3.958 20 H 0.089 0.911 21 O -0.354 6.354 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.247 0.753 26 H 0.104 0.896 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.943 -11.994 -1.556 12.250 hybrid contribution 0.365 0.599 -0.452 0.835 sum -1.578 -11.395 -2.008 11.678 Atomic orbital electron populations 1.69924 1.06016 1.27421 1.49334 1.24971 0.95009 0.99517 0.94675 0.86343 0.79948 0.82808 0.77744 1.19607 1.20820 1.20762 1.21212 0.93550 0.89771 1.52503 0.91497 1.19325 0.88056 0.83912 0.97376 1.55477 1.19709 1.23567 1.87560 1.04718 0.74757 0.73950 0.75882 1.93600 1.76291 1.85430 1.38700 1.93557 1.44654 1.70230 1.87483 1.32422 1.15815 1.02151 1.24147 0.82421 1.23494 0.80857 0.92015 1.04039 1.89152 1.43768 1.27982 1.66691 1.24202 0.95018 0.89161 0.97909 1.22671 0.95049 0.88141 0.89949 0.91122 1.86601 1.78445 1.26152 1.44237 0.92395 0.95559 0.94139 0.75298 0.89624 0.86261 0.88094 0.90398 0.76956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 13.29 55.43 0.74 -23.81 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -13.80 9.27 -34.44 -0.32 -14.12 16 8 H 0.07 1.68 7.65 -52.49 -0.40 1.28 16 9 C 0.24 5.51 4.48 -5.19 -0.02 5.49 16 10 N -1.10 -21.43 5.88 -11.66 -0.07 -21.50 16 11 S 2.62 46.36 4.80 -107.50 -0.52 45.84 16 12 O -0.95 -19.27 17.03 -57.54 -0.98 -20.24 16 13 O -0.97 -18.71 18.08 -57.54 -1.04 -19.75 16 14 C -0.64 -9.78 3.66 -25.16 -0.09 -9.87 16 15 H 0.16 2.27 8.00 -51.93 -0.42 1.86 16 16 C 0.07 1.21 5.45 37.93 0.21 1.41 16 17 O -0.36 -5.79 11.65 -35.23 -0.41 -6.20 16 18 C 0.01 0.19 7.38 37.93 0.28 0.47 16 19 C 0.10 1.34 4.16 -25.16 -0.10 1.23 16 20 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 21 O -0.55 -6.59 13.30 -35.23 -0.47 -7.06 16 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.03 0.60 5.77 -51.93 -0.30 0.30 16 24 H 0.04 1.03 7.53 -51.93 -0.39 0.63 16 25 H 0.41 7.48 8.50 -34.47 -0.29 7.18 16 26 H 0.09 1.49 6.54 -51.93 -0.34 1.15 16 27 H 0.12 1.96 6.96 -51.93 -0.36 1.60 16 28 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.38 2.45 9.12 45.56 0.42 2.87 16 LS Contribution 267.02 15.07 4.02 4.02 Total: -1.00 -33.40 267.02 -6.36 -39.76 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -2.46 Total: 7.38 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.15 Total: -13.83 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.67 Total: -45.31 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -2.90 Total: -53.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 46.36 SS G_CDS: -0.52 Total: 45.84 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.40 -6.36 -39.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211689148.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.396 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds