Wall clock time and date at job start Sun Mar 29 2020 22:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99797 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99806 * 3 2 1 6 6 H 1.48496 * 109.47209 * 149.99843 * 3 2 1 7 7 C 1.37876 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46623 * 179.97438 * 12 11 10 14 14 O 1.42906 * 109.46752 * 179.97438 * 13 12 11 15 15 C 1.42898 * 113.99824 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.52057 * 29.29612 * 15 14 13 17 17 C 1.54842 * 110.58140 * 266.51743 * 15 14 13 18 18 C 1.56197 * 103.68244 * 241.45255 * 17 15 14 19 19 H 1.08993 * 116.29252 * 163.13761 * 18 17 15 20 20 C 1.53363 * 104.07413 * 292.47801 * 18 17 15 21 21 C 1.31794 * 108.42826 * 70.08323 * 20 18 17 22 22 C 1.56190 * 110.58483 * 152.08819 * 15 14 13 23 23 H 1.09001 * 116.28957 * 314.53789 * 22 15 14 24 24 C 1.57255 * 100.39997 * 36.31697 * 18 17 15 25 25 H 0.96996 * 119.99943 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47476 * 59.99513 * 9 7 2 27 27 H 1.08996 * 109.47197 * 299.99870 * 9 7 2 28 28 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 29 29 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 30 30 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 31 31 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 32 32 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 33 33 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 34 34 H 1.08993 * 109.46955 * 300.00075 * 13 12 11 35 35 H 1.09000 * 109.47050 * 59.99904 * 13 12 11 36 36 H 1.09006 * 110.57845 * 359.97438 * 17 15 14 37 37 H 1.08999 * 110.58484 * 122.74873 * 17 15 14 38 38 H 1.08003 * 125.78453 * 250.09213 * 20 18 17 39 39 H 1.07998 * 125.78558 * 179.97438 * 21 20 18 40 40 H 1.09000 * 112.52249 * 59.08480 * 24 18 17 41 41 H 1.09002 * 112.52562 * 186.94780 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4748 -6.1500 0.0018 13 6 1.7097 -7.4750 0.0031 14 8 2.6385 -8.5612 0.0031 15 6 2.0240 -9.8513 0.0037 16 1 1.0557 -9.8135 -0.4955 17 6 1.8699 -10.3802 1.4508 18 6 2.7284 -11.6850 1.4607 19 1 3.0000 -12.0768 2.4408 20 6 1.9663 -12.6399 0.5337 21 6 2.0815 -12.2001 -0.7034 22 6 2.9541 -10.9029 -0.6808 23 1 3.4151 -10.6002 -1.6209 24 6 3.9128 -11.2526 0.5210 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8721 -3.6043 -0.8894 30 1 0.8535 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 3.1014 -6.0918 0.8918 33 1 3.1014 -6.0927 -0.8882 34 1 1.0834 -7.5320 0.8933 35 1 1.0828 -7.5335 -0.8866 36 1 2.2628 -9.6580 2.1666 37 1 0.8254 -10.6042 1.6678 38 1 1.4264 -13.5229 0.8423 39 1 1.6527 -12.6619 -1.5804 40 1 4.4466 -10.3797 0.8968 41 1 4.5861 -12.0784 0.2909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:09 Heat of formation + Delta-G solvation = -42.683139 kcal Electronic energy + Delta-G solvation = -17536.441637 eV Core-core repulsion = 14801.995180 eV Total energy + Delta-G solvation = -2734.446456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.167 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77249 -37.45331 -35.13940 -32.82557 -30.71648 -29.90882 -28.63975 -27.65247 -26.23609 -23.38831 -21.35364 -21.04230 -20.52813 -19.97775 -18.25752 -17.05098 -16.47790 -16.14142 -15.75878 -15.30572 -14.45535 -14.33050 -13.91060 -13.20086 -13.00662 -12.56132 -12.26682 -12.17043 -11.71518 -11.60424 -11.59085 -11.45158 -11.36606 -11.08896 -10.92253 -10.87811 -10.62818 -10.43476 -10.40929 -10.33860 -9.66228 -9.60239 -9.23032 -9.16023 -8.97665 -8.30885 -5.96191 -3.98198 1.89279 3.34302 3.40171 3.44035 3.58532 4.25416 4.26106 4.36476 4.49387 4.65587 4.91159 4.99910 5.05414 5.15834 5.18267 5.27233 5.39381 5.39471 5.54092 5.56178 5.62983 5.65271 5.76264 5.80246 5.85267 5.87602 5.92765 6.09791 6.12545 6.32305 6.45040 6.55127 6.62256 6.85343 6.98975 7.21317 7.26629 7.73002 7.88769 8.05055 8.48343 9.09420 9.65620 11.15266 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.070528 B = 0.002673 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.911100 B =10472.371080 C =10570.610526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.062 3.938 14 O -0.378 6.378 15 C 0.085 3.915 16 H 0.064 0.936 17 C -0.143 4.143 18 C -0.078 4.078 19 H 0.100 0.900 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.071 4.071 23 H 0.107 0.893 24 C -0.116 4.116 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -25.630 0.790 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.153 4.153 13 C -0.014 4.014 14 O -0.297 6.297 15 C 0.027 3.973 16 H 0.082 0.918 17 C -0.180 4.180 18 C -0.097 4.097 19 H 0.118 0.882 20 C -0.181 4.181 21 C -0.188 4.188 22 C -0.089 4.089 23 H 0.125 0.875 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.844 -25.461 0.802 25.762 hybrid contribution -0.100 0.872 -0.025 0.878 sum 3.745 -24.589 0.777 24.885 Atomic orbital electron populations 1.69972 1.06059 1.26507 1.51157 1.25041 0.94855 0.99257 0.95442 0.86600 0.79857 0.83510 0.78079 1.20684 1.21248 1.19884 1.21300 0.93061 0.91208 1.50183 0.92724 1.19110 0.94081 0.91470 0.97093 1.21611 0.99036 0.93756 1.00290 1.21591 0.97749 0.94481 1.01543 1.21592 0.99007 0.91830 1.02910 1.22680 0.92101 0.86827 0.99840 1.87905 1.33766 1.13169 1.94862 1.23289 0.95722 0.83358 0.94920 0.91770 1.23228 0.99987 0.97081 0.97742 1.22895 0.94874 0.93912 0.97979 0.88202 1.24148 1.00276 0.98528 0.95194 1.24653 1.00232 0.96352 0.97531 1.23599 0.94886 0.91960 0.98482 0.87472 1.24077 0.96262 1.00966 0.94059 0.93068 0.96719 0.96700 0.93427 0.93415 0.92456 0.92468 0.91512 0.91481 0.93564 0.93526 0.90169 0.91283 0.85531 0.85350 0.89853 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.12 -2.00 5.21 -26.73 -0.14 -2.14 16 12 C -0.12 -1.71 5.58 -26.73 -0.15 -1.86 16 13 C 0.06 0.81 5.79 37.16 0.22 1.02 16 14 O -0.38 -4.96 10.01 -35.23 -0.35 -5.31 16 15 C 0.09 0.92 2.74 -24.05 -0.07 0.85 16 16 H 0.06 0.68 7.78 -51.93 -0.40 0.27 16 17 C -0.14 -1.37 6.06 -24.05 -0.15 -1.52 16 18 C -0.08 -0.65 5.20 -86.40 -0.45 -1.10 16 19 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 20 C -0.16 -1.28 10.14 -34.86 -0.35 -1.63 16 21 C -0.17 -1.39 10.27 -33.25 -0.34 -1.73 16 22 C -0.07 -0.67 5.13 -84.56 -0.43 -1.11 16 23 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 24 C -0.12 -1.04 6.69 -21.87 -0.15 -1.19 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 36 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 37 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.08 0.83 8.13 -51.93 -0.42 0.40 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -30.76 331.66 -9.88 -40.64 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -7.54 Total: -4.17 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -2.70 Total: -26.39 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.35 Total: -5.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.76 -9.88 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.045 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds