Wall clock time and date at job start Sun Mar 29 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08998 * 110.81711 * 53.50642 * 3 2 1 5 5 C 1.54895 * 110.75104 * 176.83969 * 3 2 1 6 6 C 1.54268 * 104.19476 * 80.37445 * 5 3 2 7 7 C 1.53869 * 106.60115 * 23.60777 * 6 5 3 8 8 C 1.54270 * 106.63967 * 359.97438 * 7 6 5 9 9 H 1.08997 * 110.48585 * 95.09409 * 8 7 6 10 10 O 1.42894 * 110.48547 * 217.73384 * 8 7 6 11 11 C 1.42897 * 114.00353 * 268.54847 * 10 8 7 12 12 C 1.53006 * 109.47467 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47369 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47208 * 180.02562 * 13 12 11 15 15 C 1.53010 * 109.47399 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47048 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00309 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99516 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00293 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46874 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46729 * 120.00173 * 20 18 16 23 23 H 1.48492 * 109.47178 * 240.00320 * 20 18 16 24 24 H 4.20853 * 14.71150 * 0.02562 * 4 2 1 25 25 H 1.08997 * 110.48689 * 321.69469 * 5 3 2 26 26 H 1.09000 * 110.59637 * 199.10845 * 5 3 2 27 27 H 1.08999 * 110.03048 * 264.32059 * 6 5 3 28 28 H 1.08996 * 110.03060 * 142.89649 * 6 5 3 29 29 H 1.09002 * 110.03268 * 119.28653 * 7 6 5 30 30 H 1.08995 * 110.03391 * 240.66959 * 7 6 5 31 31 H 1.09003 * 109.47149 * 299.99979 * 11 10 8 32 32 H 1.09001 * 109.47258 * 59.99915 * 11 10 8 33 33 H 1.09003 * 109.46932 * 300.00128 * 12 11 10 34 34 H 1.09001 * 109.46937 * 59.99735 * 12 11 10 35 35 H 1.08999 * 109.47133 * 300.00496 * 13 12 11 36 36 H 1.09001 * 109.47103 * 60.00087 * 13 12 11 37 37 H 1.08999 * 109.47422 * 300.00249 * 14 13 12 38 38 H 1.09007 * 109.47363 * 60.00371 * 14 13 12 39 39 H 1.08996 * 109.46532 * 300.00022 * 15 14 13 40 40 H 1.08999 * 109.46436 * 60.00003 * 15 14 13 41 41 H 0.96996 * 120.00250 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0336 -0.6051 -0.8191 5 6 3.1941 1.4472 -0.0799 6 6 3.0941 1.9701 1.3680 7 6 3.0947 0.7332 2.2832 8 6 3.1945 -0.4991 1.3604 9 1 4.2321 -0.8171 1.2595 10 8 2.3894 -1.5671 1.8635 11 6 3.0858 -2.4583 2.7369 12 6 2.1316 -3.5557 3.2126 13 6 2.8774 -4.5102 4.1472 14 6 1.9234 -5.6078 4.6223 15 6 2.6691 -6.5621 5.5575 16 6 1.7291 -7.6429 6.0259 17 1 0.7028 -7.6489 5.6899 18 6 2.1799 -8.6247 6.8826 19 7 3.4299 -8.6177 7.2914 20 14 1.0147 -9.9641 7.4639 21 1 -0.3266 -9.7477 6.8644 22 1 1.5359 -11.2899 7.0444 23 1 0.9087 -9.9197 8.9444 24 1 -1.0500 0.0000 -0.0008 25 1 2.5798 2.0516 -0.7471 26 1 4.2316 1.4462 -0.4143 27 1 2.1689 2.5312 1.4992 28 1 3.9510 2.6038 1.5962 29 1 3.9520 0.7666 2.9556 30 1 2.1702 0.6943 2.8592 31 1 3.9224 -2.9098 2.2036 32 1 3.4602 -1.9046 3.5980 33 1 1.2953 -3.1038 3.7460 34 1 1.7569 -4.1095 2.3518 35 1 3.7135 -4.9619 3.6134 36 1 3.2525 -3.9566 5.0080 37 1 1.0870 -5.1564 5.1559 38 1 1.5487 -6.1614 3.7612 39 1 3.5056 -7.0135 5.0241 40 1 3.0433 -6.0083 6.4184 41 1 3.7470 -9.3086 7.8938 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:23 Heat of formation + Delta-G solvation = -51.156740 kcal Electronic energy + Delta-G solvation = -17409.347239 eV Core-core repulsion = 14674.533340 eV Total energy + Delta-G solvation = -2734.813899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.25594 -37.83477 -36.57452 -34.75632 -33.49444 -32.06995 -29.59733 -28.95967 -27.73085 -25.08242 -22.84499 -22.31848 -21.75945 -21.24492 -18.92052 -18.42575 -17.49033 -17.07288 -16.78544 -16.52170 -15.95688 -15.55781 -14.79691 -14.58601 -14.45527 -14.01253 -13.84482 -13.61250 -13.11719 -13.00406 -12.77410 -12.64156 -12.50938 -12.30720 -12.22887 -12.02790 -11.86725 -11.78451 -11.49087 -11.35439 -11.30965 -11.04004 -10.95566 -10.89515 -10.56514 -10.36063 -8.20977 -6.32169 1.38991 1.39337 1.53074 1.96428 1.99638 2.40230 2.66554 3.11723 3.48495 3.62319 3.78058 4.00974 4.01927 4.15603 4.23704 4.34641 4.40262 4.47873 4.52378 4.56319 4.63706 4.75225 4.80735 4.88267 4.91473 4.96915 5.01640 5.06764 5.18466 5.21382 5.25674 5.29389 5.30557 5.38887 5.42020 5.54862 5.77604 5.86388 6.25766 6.35599 6.82698 6.85286 7.37111 8.91129 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.048896 B = 0.002818 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.508151 B = 9932.434321 C =10272.678812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.183 4.183 3 C 0.009 3.991 4 H 0.109 0.891 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.148 4.148 8 C 0.083 3.917 9 H 0.093 0.907 10 O -0.394 6.394 11 C 0.065 3.935 12 C -0.107 4.107 13 C -0.106 4.106 14 C -0.100 4.100 15 C 0.022 3.978 16 C -0.545 4.545 17 H 0.058 0.942 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.234 0.766 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.048 0.952 39 H -0.008 1.008 40 H -0.009 1.009 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 21.796 -15.217 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.183 4.183 3 C -0.009 4.009 4 H 0.126 0.874 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.186 4.186 8 C 0.026 3.974 9 H 0.111 0.889 10 O -0.313 6.313 11 C -0.011 4.011 12 C -0.145 4.145 13 C -0.143 4.143 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.251 0.749 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.502 21.697 -15.155 26.471 hybrid contribution -0.428 -0.976 0.758 1.308 sum 0.074 20.721 -14.397 25.231 Atomic orbital electron populations 1.25499 0.96855 1.00979 1.00820 1.23029 0.94724 1.00231 1.00349 1.19469 0.85007 0.99049 0.97367 0.87351 1.22386 1.02486 0.92307 0.97247 1.22049 1.02546 0.96767 0.94246 1.22659 1.02191 0.95032 0.98741 1.23229 0.94901 0.86901 0.92382 0.88948 1.87964 1.38680 1.39900 1.64784 1.22559 0.94864 0.90632 0.93050 1.21414 0.98489 0.95505 0.99097 1.21426 0.98300 0.95988 0.98612 1.21452 0.97984 0.95968 0.98359 1.19044 0.94970 0.93708 0.93804 1.21778 0.97575 1.11069 1.27913 0.92413 1.26011 0.96925 1.00681 0.96375 1.70098 1.16903 1.35545 1.34889 0.85386 0.79066 0.78436 0.78090 1.18708 1.20191 1.20207 0.74917 0.90538 0.88059 0.92415 0.89607 0.90434 0.92851 0.92262 0.92776 0.92029 0.91823 0.92110 0.92264 0.93376 0.93282 0.98958 0.99018 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.85 19.25 74.32 1.43 -3.42 16 2 C -0.18 -4.14 11.49 31.12 0.36 -3.78 16 3 C 0.01 0.16 3.43 -11.28 -0.04 0.12 16 4 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 5 C -0.11 -1.28 6.30 31.67 0.20 -1.08 16 6 C -0.12 -1.57 6.61 31.32 0.21 -1.37 16 7 C -0.15 -2.58 6.37 31.32 0.20 -2.38 16 8 C 0.08 1.59 3.07 31.70 0.10 1.69 16 9 H 0.09 1.40 7.86 -2.39 -0.02 1.38 16 10 O -0.39 -10.19 9.20 -148.98 -1.37 -11.56 16 11 C 0.07 1.61 5.80 71.98 0.42 2.03 16 12 C -0.11 -3.13 5.58 30.59 0.17 -2.96 16 13 C -0.11 -3.61 5.21 30.59 0.16 -3.45 16 14 C -0.10 -4.28 5.15 30.59 0.16 -4.12 16 15 C 0.02 1.19 4.97 29.85 0.15 1.34 16 16 C -0.55 -32.16 9.11 25.60 0.23 -31.93 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 20 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H 0.23 3.51 7.80 -4.42 -0.03 3.48 16 25 H 0.08 0.89 8.04 -2.39 -0.02 0.87 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 31 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -68.82 341.09 6.09 -62.73 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.94 Total: 8.26 kcal Atomic # 6 Polarization: -53.19 SS G_CDS: 4.20 Total: -48.99 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.28 Total: -57.68 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.37 Total: -11.56 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.82 6.09 -62.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.575 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds