Wall clock time and date at job start Sun Mar 29 2020 22:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08997 * 110.02123 * 265.95240 * 3 2 1 5 5 C 1.54259 * 110.07431 * 144.53334 * 3 2 1 6 6 C 1.54895 * 104.19912 * 264.30674 * 5 3 2 7 7 C 1.54889 * 102.74444 * 322.05475 * 6 5 3 8 8 C 1.53884 * 110.03200 * 27.34276 * 3 2 1 9 9 H 1.09002 * 110.03063 * 0.02562 * 8 3 2 10 10 O 1.42901 * 110.03228 * 238.61920 * 8 3 2 11 11 C 1.42895 * 113.99790 * 150.00239 * 10 8 3 12 12 C 1.52997 * 109.46920 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47127 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47188 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99966 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99729 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00167 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47149 * 90.00120 * 20 18 16 22 22 H 1.48501 * 109.47501 * 210.00465 * 20 18 16 23 23 H 1.48501 * 109.46930 * 330.00484 * 20 18 16 24 24 H 4.19599 * 14.90442 * 359.97438 * 4 2 1 25 25 H 1.09001 * 110.48755 * 22.98405 * 5 3 2 26 26 H 1.09007 * 110.48797 * 145.49484 * 5 3 2 27 27 H 1.08998 * 110.75871 * 80.36932 * 6 5 3 28 28 H 1.09004 * 110.75656 * 203.56309 * 6 5 3 29 29 H 1.09003 * 110.48721 * 279.26205 * 7 6 5 30 30 H 1.09007 * 110.48786 * 156.62328 * 7 6 5 31 31 H 1.08996 * 109.47554 * 60.00014 * 11 10 8 32 32 H 1.09001 * 109.47106 * 299.99458 * 11 10 8 33 33 H 1.09001 * 109.47502 * 60.00157 * 12 11 10 34 34 H 1.09001 * 109.47289 * 299.99954 * 12 11 10 35 35 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 36 36 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 39 39 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 40 40 H 1.08992 * 109.47534 * 59.99520 * 15 14 13 41 41 H 0.96996 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0191 0.0731 1.0215 5 6 3.1749 1.1809 -0.8407 6 6 3.4455 0.5631 -2.2350 7 6 4.0048 -0.8383 -1.8851 8 6 3.1737 -1.2833 -0.6640 9 1 2.3397 -1.9067 -0.9867 10 8 3.9985 -2.0052 0.2528 11 6 3.9853 -3.4205 0.0562 12 6 4.8984 -4.0871 1.0870 13 6 4.8848 -5.6025 0.8761 14 6 5.7974 -6.2692 1.9074 15 6 5.7843 -7.7844 1.6961 16 6 6.6827 -8.4411 2.7123 17 1 7.2106 -7.8380 3.4362 18 6 6.8316 -9.8119 2.7172 19 7 7.6161 -10.3849 3.6037 20 14 5.9192 -10.8550 1.4647 21 1 6.7583 -11.0172 0.2502 22 1 5.6300 -12.1895 2.0484 23 1 4.6439 -10.1874 1.0996 24 1 -1.0499 0.0005 -0.0001 25 1 2.4226 1.9666 -0.9111 26 1 4.0961 1.5736 -0.4099 27 1 2.5210 0.4785 -2.8061 28 1 4.1831 1.1509 -2.7815 29 1 5.0612 -0.7732 -1.6244 30 1 3.8582 -1.5264 -2.7177 31 1 4.3420 -3.6512 -0.9476 32 1 2.9684 -3.7944 0.1753 33 1 4.5421 -3.8565 2.0911 34 1 5.9152 -3.7131 0.9675 35 1 3.8681 -5.9768 0.9954 36 1 5.2414 -5.8327 -0.1278 37 1 6.8142 -5.8949 1.7886 38 1 5.4405 -6.0388 2.9113 39 1 4.7676 -8.1590 1.8146 40 1 6.1415 -8.0144 0.6923 41 1 7.7205 -11.3492 3.6074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:25 Heat of formation + Delta-G solvation = -33.710334 kcal Electronic energy + Delta-G solvation = -17344.465869 eV Core-core repulsion = 14610.408502 eV Total energy + Delta-G solvation = -2734.057366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.167 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.54849 -36.90143 -35.17295 -33.11390 -32.73722 -30.71527 -28.91337 -28.12697 -26.50830 -23.27006 -21.68079 -21.13350 -20.82036 -20.00741 -18.25984 -17.10042 -16.57018 -16.05372 -15.80147 -15.08681 -14.38008 -14.20749 -14.14589 -13.84517 -13.00230 -12.71430 -12.56811 -12.24959 -12.16776 -11.86764 -11.84114 -11.45987 -11.40744 -11.20472 -10.99111 -10.87611 -10.61756 -10.55621 -10.41112 -10.33634 -9.85991 -9.65874 -9.56375 -9.44416 -9.12308 -8.50162 -6.00749 -3.98174 2.48961 2.56314 3.32825 3.39895 3.44214 3.48486 4.05237 4.25702 4.36228 4.48423 4.66229 4.93121 5.06223 5.08547 5.15332 5.26082 5.29709 5.33364 5.41708 5.45090 5.49549 5.53867 5.65120 5.65734 5.71646 5.80224 5.87029 5.96884 6.01432 6.22554 6.31843 6.42749 6.69035 6.78371 6.98956 7.16213 7.33887 7.37367 7.49993 7.84494 8.58963 9.04988 9.62189 11.12954 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.042326 B = 0.002865 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.368566 B = 9771.195865 C = 9873.374680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C 0.012 3.988 4 H 0.108 0.892 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.146 4.146 8 C 0.094 3.906 9 H 0.066 0.934 10 O -0.380 6.380 11 C 0.062 3.938 12 C -0.117 4.117 13 C -0.119 4.119 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.218 0.782 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.014 0.986 40 H 0.010 0.990 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.017 22.897 -12.051 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.175 4.175 3 C -0.006 4.006 4 H 0.126 0.874 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.184 4.184 8 C 0.036 3.964 9 H 0.084 0.916 10 O -0.299 6.299 11 C -0.014 4.014 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.139 4.139 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.234 0.766 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.834 22.802 -11.842 28.288 hybrid contribution -0.805 -0.899 -0.760 1.426 sum -12.639 21.903 -12.603 28.255 Atomic orbital electron populations 1.24884 0.95852 1.00520 1.01296 1.22861 0.93966 1.00535 1.00171 1.18910 0.84538 0.95081 1.02052 0.87399 1.22379 1.01292 0.96246 0.95055 1.22447 1.01043 0.95827 0.96745 1.22906 1.01107 0.96981 0.97419 1.22714 0.92557 0.92159 0.89017 0.91587 1.87927 1.67410 1.18738 1.55814 1.22679 0.99496 0.79985 0.99247 1.21583 0.99627 0.95534 0.98677 1.21623 1.00759 0.92779 1.00467 1.21440 0.97993 0.97289 0.97211 1.19587 0.96912 0.91998 0.96773 1.21201 1.26647 0.92218 1.15679 0.91080 1.25061 0.94982 0.98058 0.95594 1.69926 1.38421 1.10423 1.35731 0.86754 0.80989 0.79594 0.81792 1.20345 1.21451 1.19034 0.76560 0.91039 0.90225 0.91421 0.90891 0.89902 0.91206 0.93409 0.93512 0.91304 0.91249 0.92463 0.92431 0.92792 0.92773 0.96756 0.97180 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.84 19.25 29.55 0.57 -1.27 16 2 C -0.18 -1.77 12.18 -37.12 -0.45 -2.22 16 3 C 0.01 0.12 3.15 -92.29 -0.29 -0.17 16 4 H 0.11 1.07 7.95 -51.93 -0.41 0.66 16 5 C -0.11 -0.84 6.35 -25.07 -0.16 -1.00 16 6 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 7 C -0.15 -1.25 6.56 -25.07 -0.16 -1.42 16 8 C 0.09 0.96 3.01 -25.61 -0.08 0.89 16 9 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 10 O -0.38 -4.77 9.90 -35.23 -0.35 -5.12 16 11 C 0.06 0.77 5.78 37.16 0.21 0.98 16 12 C -0.12 -1.63 5.58 -26.73 -0.15 -1.78 16 13 C -0.12 -1.90 5.21 -26.73 -0.14 -2.04 16 14 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 15 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 16 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 17 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.06 1.90 5.47 -17.81 -0.10 1.80 16 19 N -0.91 -28.51 13.96 55.43 0.77 -27.73 16 20 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 H 0.22 1.16 7.80 -54.09 -0.42 0.74 16 25 H 0.07 0.50 7.83 -51.93 -0.41 0.09 16 26 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -31.83 338.10 -8.11 -39.94 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -7.46 Total: -4.17 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -1.50 Total: -25.50 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.77 Total: -27.73 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.35 Total: -5.12 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.83 -8.11 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.234 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds