Wall clock time and date at job start Sun Mar 29 2020 23:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39715 * 120.18877 * 336.74035 * 3 2 1 5 5 C 1.37830 * 119.90031 * 179.97438 * 4 3 2 6 6 C 1.38521 * 120.29078 * 0.02572 * 5 4 3 7 7 C 1.38099 * 120.39495 * 359.67608 * 6 5 4 8 8 C 1.38651 * 120.09129 * 0.59846 * 7 6 5 9 9 O 1.35703 * 120.14938 * 179.69697 * 8 7 6 10 10 C 1.42906 * 117.00066 * 5.64499 * 9 8 7 11 11 H 1.08997 * 109.47085 * 21.63143 * 10 9 8 12 12 C 1.50702 * 109.46851 * 141.62544 * 10 9 8 13 13 H 1.07997 * 120.00559 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99477 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99769 * 180.02562 * 14 12 10 16 16 Si 1.86805 * 120.00427 * 0.02562 * 14 12 10 17 17 H 1.48503 * 109.46898 * 269.99996 * 16 14 12 18 18 H 1.48498 * 109.46822 * 29.99696 * 16 14 12 19 19 H 1.48495 * 109.47301 * 149.99717 * 16 14 12 20 20 C 1.52995 * 109.47025 * 261.62754 * 10 9 8 21 21 Cl 1.80301 * 109.46850 * 64.99935 * 20 10 9 22 22 H 1.08000 * 120.05542 * 359.96074 * 4 3 2 23 23 H 1.07997 * 119.85227 * 180.02562 * 5 4 3 24 24 H 1.08003 * 119.79723 * 179.97438 * 6 5 4 25 25 H 1.08002 * 119.95490 * 180.30434 * 7 6 5 26 26 H 0.97001 * 119.99904 * 180.02562 * 15 14 12 27 27 H 1.08997 * 109.47061 * 184.99780 * 20 10 9 28 28 H 1.08996 * 109.47679 * 305.00039 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -1.1086 0.4769 5 6 4.6493 -1.1018 0.4737 6 6 5.3415 0.0006 0.0000 7 6 4.6588 1.1010 -0.4799 8 6 3.2723 1.1138 -0.4789 9 8 2.6004 2.1969 -0.9444 10 6 3.3794 3.2390 -1.5356 11 1 4.3397 2.8365 -1.8579 12 6 2.6455 3.8013 -2.7257 13 1 1.6806 3.4031 -3.0027 14 6 3.2056 4.8249 -3.4602 15 7 2.5650 5.3160 -4.4985 16 14 4.8743 5.5142 -2.9808 17 1 4.6905 6.6348 -2.0239 18 1 5.6860 4.4467 -2.3429 19 1 5.5728 6.0088 -4.1942 20 6 3.6104 4.3486 -0.5079 21 17 4.6148 3.7125 0.8477 22 1 2.7354 -1.9699 0.8477 23 1 5.1920 -1.9597 0.8421 24 1 6.4215 -0.0024 0.0015 25 1 5.2056 1.9547 -0.8521 26 1 2.9592 6.0358 -5.0155 27 1 4.1276 5.1821 -0.9832 28 1 2.6509 4.6901 -0.1198 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225198646.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:08 Heat of formation + Delta-G solvation = -4.244886 kcal Electronic energy + Delta-G solvation = -15805.429687 eV Core-core repulsion = 13040.434008 eV Total energy + Delta-G solvation = -2764.995679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.28723 -38.78150 -37.34387 -36.87240 -35.34885 -32.83001 -32.03600 -30.65347 -27.20838 -24.91617 -24.46441 -22.12490 -20.47399 -18.89135 -18.58151 -17.37721 -16.77192 -16.26104 -15.88030 -15.60838 -15.09914 -14.98196 -14.71703 -14.54473 -14.10616 -13.99737 -13.61967 -13.35805 -13.11743 -12.65123 -12.54219 -12.38475 -12.18873 -11.91778 -11.57231 -11.30079 -11.12022 -10.86832 -9.87993 -9.06696 -8.51406 -6.64991 -0.07913 0.54027 1.17657 1.22833 1.28816 1.39860 1.68373 2.02531 2.12654 2.29128 2.80234 2.98135 3.01912 3.84591 3.91936 4.02017 4.06727 4.17878 4.43496 4.52421 4.61355 4.81519 4.96807 5.11285 5.38039 5.42182 5.58838 5.78843 5.98610 6.40618 6.49043 6.64226 6.99664 8.64857 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.008649 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.820190 B = 3236.714839 C = 3773.068321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.285 3.715 3 C -0.102 4.102 4 C -0.027 4.027 5 C -0.152 4.152 6 C -0.040 4.040 7 C -0.216 4.216 8 C 0.165 3.835 9 O -0.321 6.321 10 C 0.192 3.808 11 H 0.065 0.935 12 C -0.547 4.547 13 H 0.038 0.962 14 C 0.033 3.967 15 N -0.925 5.925 16 Si 0.923 3.077 17 H -0.249 1.249 18 H -0.227 1.227 19 H -0.277 1.277 20 C -0.052 4.052 21 Cl -0.188 7.188 22 H 0.163 0.837 23 H 0.174 0.826 24 H 0.162 0.838 25 H 0.134 0.866 26 H 0.278 0.722 27 H 0.092 0.908 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -9.205 10.773 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.029 4.029 3 C -0.106 4.106 4 C -0.047 4.047 5 C -0.170 4.170 6 C -0.058 4.058 7 C -0.235 4.235 8 C 0.115 3.885 9 O -0.233 6.233 10 C 0.136 3.864 11 H 0.082 0.918 12 C -0.584 4.584 13 H 0.056 0.944 14 C -0.169 4.169 15 N -0.562 5.562 16 Si 0.746 3.254 17 H -0.175 1.175 18 H -0.150 1.150 19 H -0.203 1.203 20 C -0.114 4.114 21 Cl -0.162 7.162 22 H 0.180 0.820 23 H 0.191 0.809 24 H 0.180 0.820 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.239 -9.057 10.708 17.365 hybrid contribution 0.413 1.095 -0.458 1.257 sum 10.652 -7.963 10.250 16.790 Atomic orbital electron populations 1.81133 1.13419 1.09516 1.11570 1.25888 0.93005 0.92053 0.91939 1.15657 0.83418 0.96965 1.14600 1.21315 0.95102 0.94613 0.93652 1.21373 0.92773 1.00107 1.02769 1.21579 1.01798 0.90773 0.91686 1.21519 0.91777 1.02593 1.07605 1.19461 0.91865 0.85979 0.91147 1.86099 1.38046 1.27309 1.71847 1.20652 0.93373 0.83205 0.89195 0.91759 1.20915 1.06537 1.20517 1.10442 0.94398 1.25736 1.01693 0.95480 0.93963 1.69968 1.40611 1.26773 1.18803 0.86215 0.79246 0.80980 0.79003 1.17463 1.15000 1.20314 1.25804 0.97426 0.99804 0.88406 1.98661 1.74229 1.89215 1.54060 0.81963 0.80850 0.82003 0.84804 0.91197 0.88973 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -19.71 18.54 19.00 0.35 -19.36 15 2 C 0.28 10.51 14.87 88.33 1.31 11.83 15 3 C -0.10 -3.18 5.75 -21.21 -0.12 -3.30 15 4 C -0.03 -0.55 9.76 22.53 0.22 -0.33 15 5 C -0.15 -2.43 10.02 22.24 0.22 -2.21 15 6 C -0.04 -0.77 10.03 22.30 0.22 -0.55 15 7 C -0.22 -6.25 7.20 22.34 0.16 -6.09 15 8 C 0.16 5.84 6.22 22.84 0.14 5.98 15 9 O -0.32 -14.23 9.12 -90.23 -0.82 -15.05 15 10 C 0.19 8.51 1.74 29.85 0.05 8.56 15 11 H 0.07 2.69 4.54 -2.39 -0.01 2.68 15 12 C -0.55 -30.18 9.47 25.60 0.24 -29.94 15 13 H 0.04 2.44 8.06 -2.91 -0.02 2.42 15 14 C 0.03 1.75 5.45 84.65 0.46 2.21 15 15 N -0.92 -54.16 13.96 21.45 0.30 -53.86 15 16 Si 0.92 37.99 24.41 68.60 1.67 39.66 15 17 H -0.25 -9.54 6.83 99.48 0.68 -8.86 15 18 H -0.23 -8.23 6.53 99.48 0.65 -7.58 15 19 H -0.28 -11.29 7.11 99.48 0.71 -10.58 15 20 C -0.05 -2.02 5.83 71.98 0.42 -1.60 15 21 Cl -0.19 -6.11 25.68 -2.72 -0.07 -6.18 15 22 H 0.16 2.32 8.06 -2.91 -0.02 2.30 15 23 H 0.17 1.31 8.06 -2.91 -0.02 1.29 15 24 H 0.16 2.02 8.06 -2.91 -0.02 2.00 15 25 H 0.13 4.08 4.83 -2.91 -0.01 4.06 15 26 H 0.28 14.96 8.31 -92.71 -0.77 14.19 15 27 H 0.09 3.56 3.21 -2.39 -0.01 3.55 15 28 H 0.10 3.87 8.14 -2.39 -0.02 3.86 15 Total: -1.00 -66.78 259.77 5.89 -60.89 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.12 Total: 9.32 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 3.34 Total: -15.43 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: 0.65 Total: -73.22 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.82 Total: -15.05 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.67 Total: 39.66 kcal Atomic # 17 Polarization: -6.11 SS G_CDS: -0.07 Total: -6.18 kcal Total: -66.78 5.89 -60.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225198646.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.647 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds