Wall clock time and date at job start Sun Mar 29 2020 23:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39762 * 120.09452 * 190.92224 * 3 2 1 5 5 C 1.37733 * 119.90560 * 180.29903 * 4 3 2 6 6 C 1.38961 * 120.09254 * 359.47140 * 5 4 3 7 7 O 1.35755 * 119.90444 * 180.27789 * 6 5 4 8 8 C 1.42904 * 117.00089 * 176.72141 * 7 6 5 9 9 H 1.08997 * 109.47019 * 27.16167 * 8 7 6 10 10 C 1.50702 * 109.47049 * 147.15723 * 8 7 6 11 11 H 1.08000 * 120.00025 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99762 * 179.97438 * 10 8 7 13 13 N 1.31517 * 120.00117 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99931 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47201 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47251 * 119.99946 * 14 12 10 17 17 H 1.48496 * 109.47188 * 240.00028 * 14 12 10 18 18 C 1.53001 * 109.47126 * 267.15894 * 8 7 6 19 19 Cl 1.80300 * 109.46889 * 64.99923 * 18 8 7 20 20 C 1.38961 * 120.19352 * 0.51356 * 6 5 4 21 21 C 1.37741 * 120.09280 * 359.76168 * 20 6 5 22 22 H 1.08005 * 120.04464 * 0.03099 * 4 3 2 23 23 H 1.08004 * 119.95157 * 179.70394 * 5 4 3 24 24 H 0.97001 * 119.99617 * 180.02562 * 13 12 10 25 25 H 1.08997 * 109.47042 * 185.00402 * 18 8 7 26 26 H 1.09001 * 109.46648 * 304.99901 * 18 8 7 27 27 H 1.07998 * 119.95566 * 179.74553 * 20 6 5 28 28 H 1.08002 * 120.05019 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1883 0.2291 5 6 4.6455 1.1856 0.2221 6 6 5.3389 0.0023 -0.0014 7 8 6.6964 0.0030 -0.0018 8 6 7.3458 -1.2593 -0.1661 9 1 6.6963 -1.9319 -0.7263 10 6 8.6372 -1.0658 -0.9185 11 1 8.9326 -0.0776 -1.2388 12 6 9.4419 -2.1501 -1.1971 13 7 9.0823 -3.3534 -0.8066 14 14 11.0429 -1.9101 -2.1291 15 1 11.2161 -0.4713 -2.4533 16 1 12.1783 -2.3689 -1.2890 17 1 11.0068 -2.6994 -3.3864 18 6 7.6419 -1.8633 1.2081 19 17 6.0903 -2.2310 2.0498 20 6 4.6467 -1.1809 -0.2293 21 6 3.2693 -1.1862 -0.2296 22 1 2.7301 2.1076 0.4071 23 1 5.1874 2.1039 0.3944 24 1 9.6487 -4.1162 -1.0022 25 1 8.2153 -2.7820 1.0853 26 1 8.2173 -1.1523 1.8010 27 1 5.1894 -2.0976 -0.4066 28 1 2.7320 -2.1061 -0.4073 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225243737.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:09 Heat of formation + Delta-G solvation = -11.651413 kcal Electronic energy + Delta-G solvation = -15465.266677 eV Core-core repulsion = 12699.949827 eV Total energy + Delta-G solvation = -2765.316850 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.08182 -38.91495 -37.17597 -36.51609 -35.31729 -32.27246 -31.66787 -30.58157 -27.24895 -24.84111 -24.05895 -22.36191 -19.85844 -18.92086 -18.67142 -17.07360 -16.39693 -16.18353 -15.66387 -15.16083 -14.99518 -14.88025 -14.44119 -14.28436 -13.95962 -13.86159 -13.42632 -13.13841 -13.08315 -12.86047 -12.70968 -12.32507 -12.21825 -11.80582 -11.38228 -11.14531 -10.91905 -10.53808 -9.91424 -8.95523 -8.35126 -6.49814 -0.01248 0.47151 1.41609 1.47432 1.58686 1.64269 1.68028 2.02354 2.28443 2.67767 2.99221 3.00655 3.01863 3.92783 4.01734 4.25004 4.36019 4.44243 4.55873 4.74250 4.87934 5.06953 5.21797 5.26594 5.41144 5.50191 5.60947 5.79109 5.87343 6.48321 6.53176 6.81397 7.22604 8.71336 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.032928 B = 0.005947 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.125633 B = 4707.282316 C = 5032.070858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.292 3.708 3 C -0.096 4.096 4 C -0.017 4.017 5 C -0.169 4.169 6 C 0.162 3.838 7 O -0.320 6.320 8 C 0.208 3.792 9 H 0.041 0.959 10 C -0.546 4.546 11 H 0.068 0.932 12 C 0.028 3.972 13 N -0.907 5.907 14 Si 0.973 3.027 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.277 1.277 18 C -0.029 4.029 19 Cl -0.220 7.220 20 C -0.209 4.209 21 C -0.026 4.026 22 H 0.166 0.834 23 H 0.152 0.848 24 H 0.275 0.725 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 4.610 1.838 6.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.021 4.021 3 C -0.100 4.100 4 C -0.037 4.037 5 C -0.187 4.187 6 C 0.114 3.886 7 O -0.232 6.232 8 C 0.153 3.847 9 H 0.058 0.942 10 C -0.583 4.583 11 H 0.087 0.913 12 C -0.173 4.173 13 N -0.545 5.545 14 Si 0.798 3.202 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.092 4.092 19 Cl -0.194 7.194 20 C -0.228 4.228 21 C -0.047 4.047 22 H 0.183 0.817 23 H 0.170 0.830 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.768 4.540 1.923 7.588 hybrid contribution 1.300 -0.601 -0.343 1.472 sum -4.468 3.940 1.580 6.163 Atomic orbital electron populations 1.81232 1.13027 1.09018 1.11992 1.25695 0.92425 0.92245 0.91752 1.15857 0.83544 0.95997 1.14553 1.21112 0.92417 0.97138 0.93045 1.20540 0.93674 0.96907 1.07626 1.19813 0.83507 0.94813 0.90441 1.86082 1.15999 1.35902 1.85233 1.20374 0.92701 0.79812 0.91790 0.94202 1.21269 1.04982 0.95409 1.36660 0.91330 1.25657 1.01443 0.94283 0.95948 1.69877 1.39330 0.99418 1.45856 0.85249 0.78212 0.78615 0.78141 1.19156 1.19957 1.20272 1.25429 0.84922 1.04503 0.94310 1.98642 1.42213 1.96212 1.82302 1.21342 0.95086 0.98579 1.07803 1.20982 0.92690 0.97272 0.93753 0.81671 0.82997 0.91529 0.86520 0.90451 0.85365 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.40 18.54 19.00 0.35 -14.05 15 2 C 0.29 7.76 15.33 88.33 1.35 9.12 15 3 C -0.10 -2.40 5.74 -21.30 -0.12 -2.52 15 4 C -0.02 -0.38 9.75 22.52 0.22 -0.16 15 5 C -0.17 -4.57 9.97 22.32 0.22 -4.34 15 6 C 0.16 5.61 5.97 22.62 0.14 5.74 15 7 O -0.32 -13.24 9.72 -90.81 -0.88 -14.12 15 8 C 0.21 9.38 2.19 29.85 0.07 9.45 15 9 H 0.04 1.91 5.38 -2.39 -0.01 1.90 15 10 C -0.55 -26.88 8.89 25.60 0.23 -26.65 15 11 H 0.07 3.42 7.81 -2.91 -0.02 3.40 15 12 C 0.03 1.36 5.29 84.65 0.45 1.80 15 13 N -0.91 -44.94 11.29 21.45 0.24 -44.70 15 14 Si 0.97 38.60 29.54 68.60 2.03 40.62 15 15 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 16 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 17 H -0.28 -10.85 7.11 99.48 0.71 -10.14 15 18 C -0.03 -1.22 6.17 71.98 0.44 -0.77 15 19 Cl -0.22 -8.20 25.57 -2.72 -0.07 -8.27 15 20 C -0.21 -6.94 7.00 22.33 0.16 -6.79 15 21 C -0.03 -0.73 9.75 22.52 0.22 -0.51 15 22 H 0.17 2.57 8.06 -2.91 -0.02 2.55 15 23 H 0.15 3.55 8.06 -2.91 -0.02 3.53 15 24 H 0.28 12.87 8.31 -92.71 -0.77 12.10 15 25 H 0.12 5.40 5.95 -2.39 -0.01 5.39 15 26 H 0.08 3.20 8.14 -2.39 -0.02 3.18 15 27 H 0.13 4.76 5.08 -2.91 -0.01 4.75 15 28 H 0.14 3.37 8.06 -2.91 -0.02 3.34 15 Total: -1.00 -52.04 266.88 6.23 -45.80 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.20 Total: 10.35 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 3.37 Total: -15.63 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.59 Total: -58.75 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.88 Total: -14.12 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 17 Polarization: -8.20 SS G_CDS: -0.07 Total: -8.27 kcal Total: -52.04 6.23 -45.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225243737.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.150 kcal (2) G-P(sol) polarization free energy of solvation -52.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds