Wall clock time and date at job start Sun Mar 29 2020 22:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48504 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47371 * 300.00128 * 3 2 1 6 6 H 1.48496 * 109.47443 * 60.00520 * 3 2 1 7 7 C 1.37873 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00384 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 60.00145 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46963 * 299.99499 * 11 10 9 13 13 N 1.46898 * 109.47374 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00190 * 85.00128 * 13 12 11 15 15 H 1.08998 * 115.55721 * 9.41867 * 14 13 12 16 16 C 1.53153 * 117.51609 * 223.66861 * 14 13 12 17 17 C 1.52333 * 117.51835 * 155.16931 * 14 13 12 18 18 C 1.53295 * 128.80191 * 349.56426 * 17 14 13 19 19 N 1.48104 * 85.91897 * 196.85454 * 18 17 14 20 20 C 1.48097 * 90.96078 * 24.14715 * 19 18 17 21 21 C 1.52997 * 109.47092 * 60.00194 * 12 11 10 22 22 C 1.53002 * 109.46966 * 180.02562 * 9 7 2 23 23 H 0.97001 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 299.99916 * 9 7 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 26 26 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 27 27 H 1.09000 * 109.47437 * 180.02562 * 11 10 9 28 28 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 29 29 H 1.09002 * 109.47067 * 300.00341 * 12 11 10 30 30 H 1.00905 * 110.99666 * 321.04227 * 13 12 11 31 31 H 1.09006 * 117.51325 * 359.97438 * 16 14 13 32 32 H 1.09002 * 117.51458 * 145.07232 * 16 14 13 33 33 H 1.09000 * 113.79812 * 311.10392 * 18 17 14 34 34 H 1.08993 * 113.80082 * 82.60456 * 18 17 14 35 35 H 1.00903 * 110.99740 * 271.16612 * 19 18 17 36 36 H 1.09000 * 113.80280 * 221.59583 * 20 19 18 37 37 H 1.09005 * 113.90494 * 90.11412 * 20 19 18 38 38 H 1.09001 * 109.47375 * 180.02562 * 21 12 11 39 39 H 1.09002 * 109.47497 * 59.99850 * 21 12 11 40 40 H 1.09002 * 109.47075 * 299.99352 * 22 9 7 41 41 H 1.08996 * 109.47407 * 60.00310 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 0.3710 -2.5799 -1.2495 11 6 -0.3944 -3.9047 -1.2492 12 6 0.5996 -5.0679 -1.2496 13 7 -0.1352 -6.3399 -1.2499 14 6 -0.5022 -6.7356 -2.6162 15 1 -0.0541 -6.1431 -3.4137 16 6 -1.9201 -7.2686 -2.8417 17 6 -0.7280 -8.2184 -2.8828 18 6 -0.4208 -9.4152 -1.9755 19 7 -0.5469 -10.2401 -3.1991 20 6 -0.2203 -9.0727 -4.0498 21 6 1.4797 -4.9871 -0.0007 22 6 2.2455 -3.6620 -0.0005 23 1 -0.4851 0.8400 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 -0.3373 -1.7515 -1.2490 26 1 0.9973 -2.5219 -2.1396 27 1 -1.0210 -3.9625 -2.1391 28 1 -1.0207 -3.9623 -0.3589 29 1 1.2259 -5.0103 -2.1398 30 1 -0.9504 -6.2867 -0.6575 31 1 -2.5802 -7.3259 -1.9761 32 1 -2.4046 -7.0265 -3.7877 33 1 0.5850 -9.4021 -1.5556 34 1 -1.1920 -9.6121 -1.2309 35 1 -1.5017 -10.5344 -3.3399 36 1 -0.8327 -8.9982 -4.9485 37 1 0.8449 -8.9559 -4.2497 38 1 2.1881 -5.8155 -0.0012 39 1 0.8534 -5.0447 0.8896 40 1 2.8720 -3.6043 -0.8906 41 1 2.8721 -3.6043 0.8894 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246442905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:11 Heat of formation + Delta-G solvation = 44.686348 kcal Electronic energy + Delta-G solvation = -18542.166473 eV Core-core repulsion = 15843.801392 eV Total energy + Delta-G solvation = -2698.365080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06674 -38.06034 -35.43653 -33.11093 -31.31292 -29.66048 -27.80796 -26.14349 -24.60312 -24.19356 -21.68678 -21.47570 -20.62650 -18.95306 -18.47422 -16.51025 -16.31966 -15.73318 -15.46526 -14.58925 -14.23118 -13.52065 -13.36676 -13.23112 -13.10175 -12.88630 -12.55972 -12.27519 -12.05067 -11.83960 -11.36565 -11.13085 -10.99332 -10.73309 -10.71159 -10.47744 -10.41482 -10.16904 -10.02450 -9.81775 -9.36100 -9.05416 -8.78721 -8.64966 -8.30970 -7.82133 -5.96905 -4.02886 3.29491 3.37786 3.41890 3.56065 3.90905 4.01480 4.44759 4.51708 4.63764 5.00794 5.30416 5.32331 5.35754 5.45971 5.48680 5.55833 5.58519 5.66644 5.68623 5.76648 5.88873 5.94086 6.05592 6.17400 6.27188 6.38723 6.41242 6.64028 6.66854 6.82016 6.92739 7.13269 7.14672 7.22343 7.36894 7.51789 7.59169 7.76654 8.03803 8.16773 8.49479 9.01871 9.61871 11.08473 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.004059 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.690367 B = 6896.498983 C = 7102.028638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C -0.142 4.142 12 C 0.093 3.907 13 N -0.654 5.654 14 C 0.054 3.946 15 H 0.108 0.892 16 C -0.178 4.178 17 C -0.206 4.206 18 C 0.071 3.929 19 N -0.661 5.661 20 C 0.059 3.941 21 C -0.101 4.101 22 C -0.109 4.109 23 H 0.258 0.742 24 H 0.024 0.976 25 H 0.090 0.910 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.340 0.660 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.334 0.666 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -14.749 -5.595 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.181 4.181 12 C -0.016 4.016 13 N -0.281 5.281 14 C -0.058 4.058 15 H 0.126 0.874 16 C -0.216 4.216 17 C -0.209 4.209 18 C -0.058 4.058 19 N -0.287 5.287 20 C -0.071 4.071 21 C -0.139 4.139 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.108 0.892 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.484 -15.560 -5.580 16.716 hybrid contribution -1.262 2.324 -0.215 2.653 sum -3.746 -13.236 -5.796 14.927 Atomic orbital electron populations 1.69884 1.05858 1.26114 1.51237 1.24971 0.94828 0.99004 0.95273 0.86600 0.80226 0.84052 0.77502 1.19816 1.21135 1.21107 1.21300 0.92945 0.90814 1.49871 0.92748 1.18660 0.92646 0.91614 0.94119 1.21552 0.99463 0.94595 0.98794 1.22306 0.98004 0.97962 0.99805 1.21725 0.94832 0.85833 0.99228 1.60342 1.27671 1.32954 1.07174 1.22332 0.96121 0.94709 0.92668 0.87410 1.23380 0.91733 1.03276 1.03244 1.24544 1.04140 0.93292 0.98922 1.23024 1.02487 0.87694 0.92605 1.65177 1.29337 1.29957 1.04185 1.23183 1.01659 0.87836 0.94420 1.21496 0.97873 0.98018 0.96491 1.21638 0.98614 0.94303 1.00120 0.93214 0.95813 0.89164 0.94942 0.94267 0.92880 0.91105 0.84091 0.88499 0.88688 0.87871 0.91454 0.85265 0.91309 0.88262 0.93037 0.92821 0.93524 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.17 2.10 -91.77 -0.19 0.98 16 10 C -0.11 -2.42 4.98 -26.73 -0.13 -2.56 16 11 C -0.14 -2.62 5.18 -26.73 -0.14 -2.76 16 12 C 0.09 1.52 2.43 -67.71 -0.16 1.35 16 13 N -0.65 -9.02 6.52 -100.02 -0.65 -9.67 16 14 C 0.05 0.67 6.09 -67.97 -0.41 0.25 16 15 H 0.11 1.39 7.60 -51.93 -0.39 1.00 16 16 C -0.18 -1.85 10.24 -26.92 -0.28 -2.12 16 17 C -0.21 -2.20 3.17 -154.91 -0.49 -2.69 16 18 C 0.07 0.76 8.91 -3.01 -0.03 0.73 16 19 N -0.66 -6.75 8.55 -119.98 -1.03 -7.77 16 20 C 0.06 0.58 8.92 -3.02 -0.03 0.55 16 21 C -0.10 -1.76 5.53 -26.71 -0.15 -1.91 16 22 C -0.11 -2.24 5.15 -26.70 -0.14 -2.38 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 24 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.07 1.20 7.57 -51.93 -0.39 0.81 16 30 H 0.34 4.55 8.26 -39.29 -0.32 4.23 16 31 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.33 2.91 8.89 -39.29 -0.35 2.56 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -27.56 322.08 -10.98 -38.54 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.23 Total: 5.78 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.54 Total: -23.25 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -1.05 Total: -42.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.56 -10.98 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246442905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.226 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds