Wall clock time and date at job start Sun Mar 29 2020 22:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48502 * 109.47246 * 270.00208 * 3 2 1 5 5 H 1.48507 * 109.47062 * 29.99921 * 3 2 1 6 6 H 1.48493 * 109.47238 * 149.99773 * 3 2 1 7 7 C 1.37876 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47272 * 299.99771 * 9 7 2 11 11 C 1.53002 * 109.46969 * 300.00193 * 10 9 7 12 12 C 1.53008 * 109.47165 * 300.00183 * 11 10 9 13 13 N 1.46893 * 109.47132 * 180.02562 * 12 11 10 14 14 C 1.47429 * 111.00697 * 79.77128 * 13 12 11 15 15 C 1.53316 * 88.10989 * 139.07405 * 14 13 12 16 16 H 1.08997 * 116.83741 * 91.69686 * 15 14 13 17 17 C 1.53875 * 113.89774 * 231.59291 * 15 14 13 18 18 N 1.47165 * 106.73527 * 61.72310 * 17 15 14 19 19 C 1.47067 * 109.20151 * 17.97718 * 18 17 15 20 20 C 1.47526 * 111.00046 * 175.96677 * 13 12 11 21 21 H 1.08998 * 115.85763 * 102.85269 * 20 13 12 22 22 C 1.52997 * 109.47235 * 59.99484 * 12 11 10 23 23 C 1.52998 * 109.47216 * 179.97438 * 9 7 2 24 24 H 0.96995 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47322 * 59.99963 * 9 7 2 26 26 H 1.09000 * 109.47436 * 59.99337 * 10 9 7 27 27 H 1.08993 * 109.47142 * 180.02562 * 10 9 7 28 28 H 1.08995 * 109.47452 * 179.97438 * 11 10 9 29 29 H 1.09002 * 109.47166 * 59.99453 * 11 10 9 30 30 H 1.09002 * 109.46482 * 299.99688 * 12 11 10 31 31 H 1.09002 * 113.45049 * 253.88986 * 14 13 12 32 32 H 1.09008 * 113.44596 * 24.25761 * 14 13 12 33 33 H 1.09001 * 110.00962 * 181.03844 * 17 15 14 34 34 H 1.09000 * 110.00976 * 302.40339 * 17 15 14 35 35 H 1.00894 * 111.00405 * 140.67035 * 18 17 15 36 36 H 1.09006 * 109.77553 * 239.17614 * 19 18 17 37 37 H 1.08999 * 109.77919 * 118.40311 * 19 18 17 38 38 H 1.08994 * 109.46974 * 180.02562 * 22 12 11 39 39 H 1.09003 * 109.46771 * 60.00368 * 22 12 11 40 40 H 1.08993 * 109.47479 * 179.97438 * 23 9 7 41 41 H 1.09007 * 109.47233 * 300.00172 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3711 -2.5800 1.2494 11 6 1.2503 -2.4986 2.4990 12 6 2.2447 -3.6615 2.4995 13 7 3.0883 -3.5837 3.6995 14 6 2.3811 -4.1166 4.8783 15 6 3.6939 -4.7871 5.2996 16 1 4.3458 -4.2190 5.9632 17 6 3.5567 -6.2889 5.6052 18 7 3.1134 -6.9360 4.3600 19 6 3.3798 -6.0376 3.2266 20 6 3.9962 -4.7435 3.7835 21 1 5.0324 -4.5576 3.5009 22 6 3.1246 -3.5807 1.2506 23 6 2.2453 -3.6620 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 -0.3372 -1.7515 1.2491 27 1 -0.1735 -3.5241 1.2496 28 1 0.6233 -2.5557 3.3888 29 1 1.7953 -1.5546 2.4989 30 1 1.6996 -4.6055 2.4996 31 1 2.0475 -3.3432 5.5702 32 1 1.5927 -4.8261 4.6269 33 1 4.5193 -6.6960 5.9147 34 1 2.8162 -6.4437 6.3900 35 1 3.5719 -7.8256 4.2317 36 1 2.4475 -5.8093 2.7099 37 1 4.0778 -6.5114 2.5364 38 1 3.8326 -4.4094 1.2508 39 1 3.6696 -2.6367 1.2505 40 1 1.7004 -4.6060 0.0010 41 1 2.8721 -3.6043 -0.8895 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246922336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:05 Heat of formation + Delta-G solvation = 21.456280 kcal Electronic energy + Delta-G solvation = -19743.346666 eV Core-core repulsion = 17043.974254 eV Total energy + Delta-G solvation = -2699.372411 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.58184 -39.07622 -35.91816 -34.31471 -31.91400 -31.48242 -29.56722 -27.86802 -26.70361 -25.53905 -23.42190 -23.01002 -21.31587 -20.33987 -19.60455 -18.16108 -17.70127 -16.87933 -16.69928 -16.18687 -15.76429 -15.09643 -14.82641 -14.69603 -14.35125 -13.98195 -13.85583 -13.59431 -13.15740 -12.92131 -12.85776 -12.71400 -12.58680 -12.42780 -12.28966 -12.05338 -11.82223 -11.59247 -11.44503 -11.22967 -10.85927 -10.69270 -10.45228 -10.27413 -9.86662 -9.21103 -8.02530 -6.11784 1.39456 1.41519 1.50482 2.46132 2.93407 3.25866 3.30951 3.41080 3.68719 3.89438 4.06545 4.09908 4.18256 4.26238 4.38192 4.48758 4.59507 4.66451 4.71548 4.79030 4.81647 4.86594 4.90851 4.94477 4.98640 5.06367 5.10990 5.17511 5.27340 5.39583 5.51369 5.54386 5.66278 5.68113 5.74322 5.91364 5.97638 6.20485 6.27950 6.46755 6.49950 6.97245 7.53659 9.02509 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.006173 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.593333 B = 4534.967426 C = 4723.482246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.502 4.502 8 H 0.050 0.950 9 C 0.038 3.962 10 C -0.102 4.102 11 C -0.076 4.076 12 C 0.065 3.935 13 N -0.475 5.475 14 C 0.008 3.992 15 C -0.114 4.114 16 H 0.127 0.873 17 C 0.061 3.939 18 N -0.690 5.690 19 C 0.028 3.972 20 C 0.003 3.997 21 H 0.105 0.895 22 C -0.086 4.086 23 C -0.100 4.100 24 H 0.257 0.743 25 H -0.010 1.010 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.352 0.648 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -13.067 10.610 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.020 3.980 10 C -0.140 4.140 11 C -0.114 4.114 12 C -0.044 4.044 13 N -0.197 5.197 14 C -0.121 4.121 15 C -0.134 4.134 16 H 0.145 0.855 17 C -0.068 4.068 18 N -0.321 5.321 19 C -0.102 4.102 20 C -0.107 4.107 21 H 0.123 0.877 22 C -0.124 4.124 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.008 0.992 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.454 -12.069 10.641 17.733 hybrid contribution 0.536 0.550 -0.600 0.974 sum 7.990 -11.519 10.041 17.244 Atomic orbital electron populations 1.70007 1.07012 1.26599 1.52439 1.25608 0.95470 1.01812 0.95564 0.85819 0.78899 0.80537 0.78016 1.20314 1.21297 1.19620 1.21370 0.92575 0.91521 1.48552 0.93157 1.18690 0.93173 0.93187 0.92994 1.21365 0.98382 0.98478 0.95802 1.21101 0.96192 0.97931 0.96127 1.22114 0.94093 0.97125 0.91020 1.69130 1.12660 1.34904 1.02989 1.23671 0.96559 0.98023 0.93821 1.23739 0.97322 0.96738 0.95564 0.85490 1.22379 1.00262 0.91530 0.92662 1.61392 1.62587 1.06468 1.01640 1.22860 1.00722 0.92281 0.94333 1.24391 0.98855 0.90471 0.97011 0.87688 1.21290 0.97061 1.00810 0.93212 1.21458 0.97731 0.97578 0.97064 0.93417 0.99205 0.92373 0.95667 0.94630 0.93838 0.92773 0.90395 0.91348 0.91447 0.89740 0.83018 0.90763 0.91413 0.91946 0.93240 0.93172 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 11.32 21.45 0.24 -54.01 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.94 44.93 29.54 68.60 2.03 46.95 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.50 -27.63 6.61 25.60 0.17 -27.46 16 8 H 0.05 2.76 6.71 -2.91 -0.02 2.74 16 9 C 0.04 1.93 2.58 -11.54 -0.03 1.90 16 10 C -0.10 -4.95 5.24 30.59 0.16 -4.79 16 11 C -0.08 -3.32 5.15 30.60 0.16 -3.16 16 12 C 0.06 2.35 1.22 44.92 0.05 2.40 16 13 N -0.48 -15.19 6.12 -868.88 -5.32 -20.51 16 14 C 0.01 0.22 6.57 83.84 0.55 0.77 16 15 C -0.11 -2.39 5.41 -9.83 -0.05 -2.44 16 16 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 17 C 0.06 1.02 7.14 86.55 0.62 1.63 16 18 N -0.69 -13.29 7.10 -509.85 -3.62 -16.91 16 19 C 0.03 0.64 5.42 86.53 0.47 1.11 16 20 C 0.00 0.08 4.30 43.16 0.19 0.27 16 21 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 22 C -0.09 -3.23 4.84 30.61 0.15 -3.08 16 23 C -0.10 -4.13 5.42 30.61 0.17 -3.97 16 24 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 27 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.03 1.47 7.88 -2.39 -0.02 1.45 16 29 H 0.04 2.19 7.22 -2.39 -0.02 2.17 16 30 H 0.05 1.93 4.98 -2.39 -0.01 1.91 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 1.97 6.84 -2.38 -0.02 1.96 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.35 5.20 8.90 -89.70 -0.80 4.40 16 36 H 0.07 2.08 4.68 -2.38 -0.01 2.07 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.98 6.65 -2.39 -0.02 1.97 16 39 H 0.05 2.14 6.62 -2.39 -0.02 2.12 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -61.32 296.87 -3.41 -64.73 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.22 Total: 15.39 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 3.04 Total: -35.64 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -8.69 Total: -91.43 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -61.32 -3.41 -64.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246922336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.184 kcal (2) G-P(sol) polarization free energy of solvation -61.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds