Wall clock time and date at job start Sun Mar 29 2020 22:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47530 * 2 1 4 4 C 1.53007 * 109.47264 * 120.00297 * 2 1 3 5 5 C 1.52997 * 109.47259 * 64.99663 * 4 2 1 6 6 N 1.46495 * 109.47049 * 179.97438 * 5 4 2 7 7 C 1.34952 * 126.03652 * 125.31061 * 6 5 4 8 8 C 1.35317 * 107.74679 * 180.14565 * 7 6 5 9 9 C 1.50698 * 126.03694 * 179.87279 * 8 7 6 10 10 C 1.53006 * 109.47184 * 269.71430 * 9 8 7 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99967 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00542 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99408 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.46854 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47025 * 119.99859 * 16 14 12 19 19 H 1.48498 * 109.46692 * 239.99831 * 16 14 12 20 20 C 1.39867 * 107.91922 * 359.61375 * 8 7 6 21 21 N 1.30844 * 108.20399 * 0.23912 * 20 8 7 22 22 H 1.08993 * 109.47411 * 59.99890 * 1 2 3 23 23 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47036 * 299.99632 * 1 2 3 25 25 H 1.09006 * 109.47115 * 239.99590 * 2 1 3 26 26 H 1.09001 * 109.47580 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46777 * 300.00685 * 3 2 1 28 28 H 1.08998 * 109.46660 * 59.99586 * 3 2 1 29 29 H 1.08998 * 109.46564 * 304.99644 * 4 2 1 30 30 H 1.09004 * 109.47087 * 184.99848 * 4 2 1 31 31 H 1.09000 * 109.46748 * 60.00013 * 5 4 2 32 32 H 1.08998 * 109.46888 * 300.00311 * 5 4 2 33 33 H 1.08002 * 126.12753 * 0.02562 * 7 6 5 34 34 H 1.09001 * 109.46665 * 149.71819 * 9 8 7 35 35 H 1.08993 * 109.47304 * 29.71375 * 9 8 7 36 36 H 1.09001 * 109.46801 * 300.00442 * 10 9 8 37 37 H 1.09001 * 109.46998 * 60.00038 * 10 9 8 38 38 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 39 39 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 40 40 H 0.96999 * 119.99910 * 180.02562 * 15 14 12 41 41 H 1.08000 * 125.89821 * 180.22176 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1241 -2.8862 2.3838 7 6 1.3769 -3.6087 3.2446 8 6 2.1990 -4.0763 4.2123 9 6 1.7918 -4.9307 5.3851 10 6 1.4173 -4.0318 6.5653 11 6 1.0045 -4.8992 7.7561 12 6 0.6350 -4.0139 8.9183 13 1 0.6887 -2.9400 8.8175 14 6 0.2282 -4.5749 10.1103 15 7 0.1623 -5.8827 10.2328 16 14 -0.2305 -3.4775 11.5506 17 1 -0.0730 -2.0540 11.1581 18 1 -1.6416 -3.7318 11.9369 19 1 0.6592 -3.7744 12.7020 20 6 3.4944 -3.6316 3.9286 21 7 3.4507 -2.9181 2.8327 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.6054 -0.2618 2.1369 30 1 3.1264 -0.6444 1.2951 31 1 2.0698 -2.6550 0.3002 32 1 0.5489 -2.2724 1.1421 33 1 0.3130 -3.7810 3.1748 34 1 2.6224 -5.5767 5.6696 35 1 0.9337 -5.5429 5.1080 36 1 2.2755 -3.4196 6.8423 37 1 0.5868 -3.3858 6.2806 38 1 0.1465 -5.5118 7.4792 39 1 1.8353 -5.5449 8.0405 40 1 -0.1242 -6.2774 11.0712 41 1 4.3780 -3.8407 4.5133 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:23 Heat of formation + Delta-G solvation = 34.120558 kcal Electronic energy + Delta-G solvation = -17502.758562 eV Core-core repulsion = 14803.935315 eV Total energy + Delta-G solvation = -2698.823247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98775 -37.31029 -34.75877 -33.12903 -32.11959 -29.91886 -28.91392 -27.53627 -26.25269 -24.09592 -23.04701 -20.66939 -20.43736 -20.19817 -19.50599 -16.81959 -16.10533 -15.64574 -15.29131 -14.48281 -14.38953 -14.14613 -13.93372 -13.73012 -13.08304 -12.91599 -12.60229 -12.49088 -12.32165 -12.04517 -11.90156 -11.59944 -11.26129 -11.14527 -11.05945 -10.94046 -10.78864 -10.56505 -10.46893 -10.22382 -9.54185 -9.26411 -9.18875 -9.01324 -8.28446 -7.94957 -5.93736 -3.95261 2.09909 2.64210 3.11223 3.34587 3.41881 3.46668 4.29301 4.46593 4.51503 4.56186 4.72547 4.95440 5.05921 5.07908 5.24150 5.30295 5.30596 5.41929 5.46265 5.52145 5.64011 5.65950 5.71214 5.80502 5.87557 5.97774 6.03843 6.11585 6.30813 6.37963 6.52630 6.90528 6.97721 7.07061 7.21923 7.29754 7.77301 7.91731 7.94515 8.08500 8.52152 9.12728 9.68403 11.17664 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.026995 B = 0.003408 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.983673 B = 8214.864423 C = 8800.987179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.127 4.127 5 C 0.137 3.863 6 N -0.379 5.379 7 C 0.044 3.956 8 C -0.215 4.215 9 C -0.045 4.045 10 C -0.102 4.102 11 C 0.019 3.981 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.049 3.951 21 N -0.304 5.304 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 9.034 -21.657 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.163 5.163 7 C -0.101 4.101 8 C -0.226 4.226 9 C -0.083 4.083 10 C -0.140 4.140 11 C -0.018 4.018 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.137 4.137 21 N -0.125 5.125 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.186 0.814 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.575 9.663 -22.507 24.628 hybrid contribution -0.825 0.052 1.503 1.715 sum 1.750 9.715 -21.004 23.208 Atomic orbital electron populations 1.21947 0.95092 1.01877 1.02125 1.21077 0.95945 0.96548 0.97773 1.21821 1.01140 0.95601 1.01874 1.21941 1.02685 0.93322 0.98565 1.21713 0.99376 0.92576 0.84796 1.48507 1.05647 1.40706 1.21396 1.22316 0.98156 0.97400 0.92227 1.20408 0.92801 1.08680 1.00709 1.20067 1.00555 0.96227 0.91489 1.21608 0.99575 0.98052 0.94729 1.19133 0.96430 0.94868 0.91379 1.21339 1.44009 0.93167 0.96990 0.92772 1.25030 0.95885 0.94924 0.98738 1.69979 1.48298 1.09584 1.25817 0.86574 0.78031 0.80948 0.82692 1.19784 1.21080 1.21053 1.23813 0.98433 0.96796 0.94629 1.77211 0.96873 1.23491 1.14926 0.92530 0.92525 0.92374 0.90976 0.92544 0.92588 0.92535 0.91226 0.90402 0.90373 0.88847 0.81381 0.91726 0.92087 0.93561 0.93802 0.96712 0.96612 0.93161 0.80311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.95 37.15 0.33 -0.63 16 2 C -0.09 -0.65 2.92 -90.62 -0.26 -0.92 16 3 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 4 C -0.13 -1.16 4.87 -26.73 -0.13 -1.29 16 5 C 0.14 1.30 6.26 -4.05 -0.03 1.27 16 6 N -0.38 -5.12 3.68 -61.37 -0.23 -5.35 16 7 C 0.04 0.61 11.36 -17.22 -0.20 0.42 16 8 C -0.21 -3.43 5.35 -105.05 -0.56 -3.99 16 9 C -0.04 -0.78 5.70 -27.88 -0.16 -0.94 16 10 C -0.10 -2.16 5.14 -26.73 -0.14 -2.30 16 11 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 20 C 0.05 0.76 11.96 -17.36 -0.21 0.55 16 21 N -0.30 -4.73 12.42 30.63 0.38 -4.35 16 22 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 24 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.70 6.49 -51.93 -0.34 0.36 16 33 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.18 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -32.42 338.84 -7.99 -40.41 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -7.41 Total: -4.25 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.56 Total: -21.92 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.89 Total: -36.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.42 -7.99 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.526 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds