Wall clock time and date at job start Sun Mar 29 2020 22:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99935 * 2 1 4 4 H 1.48498 * 109.47175 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46720 * 120.00417 * 3 2 1 6 6 H 1.48496 * 109.47317 * 240.00198 * 3 2 1 7 7 C 1.37875 * 120.00357 * 180.28036 * 2 1 3 8 8 H 1.07998 * 120.00716 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.53935 * 113.73336 * 276.72894 * 9 7 2 11 11 N 1.47959 * 86.17618 * 221.91984 * 10 9 7 12 12 C 1.46906 * 110.99610 * 137.58603 * 11 10 9 13 13 H 1.09003 * 108.91387 * 313.75967 * 12 11 10 14 14 C 1.52884 * 108.93208 * 195.07135 * 12 11 10 15 15 C 1.53063 * 109.09157 * 175.17912 * 14 12 11 16 16 C 1.52218 * 110.24007 * 93.81688 * 15 14 12 17 17 C 1.51480 * 113.31985 * 288.06053 * 16 15 14 18 18 N 1.46945 * 111.82899 * 352.75760 * 17 16 15 19 19 C 1.44464 * 113.45708 * 311.25119 * 18 17 16 20 20 C 1.51033 * 112.28070 * 62.33023 * 19 18 17 21 21 C 1.47117 * 110.01562 * 84.08346 * 18 17 16 22 22 C 1.47956 * 90.76483 * 24.69114 * 11 10 9 23 23 H 0.97003 * 120.00179 * 359.71567 * 1 2 3 24 24 H 1.09004 * 112.93851 * 48.43836 * 9 7 2 25 25 H 1.09000 * 113.75814 * 336.24019 * 10 9 7 26 26 H 1.08995 * 113.75904 * 107.60395 * 10 9 7 27 27 H 1.09003 * 109.52842 * 295.14986 * 14 12 11 28 28 H 1.08995 * 109.53519 * 55.37381 * 14 12 11 29 29 H 1.09000 * 108.18732 * 211.96650 * 15 14 12 30 30 H 1.09001 * 108.72075 * 167.06295 * 16 15 14 31 31 H 1.09007 * 108.71150 * 49.04414 * 16 15 14 32 32 H 1.09004 * 109.00841 * 232.15568 * 17 16 15 33 33 H 1.08994 * 108.95042 * 113.32313 * 17 16 15 34 34 H 1.08999 * 108.85728 * 182.64867 * 19 18 17 35 35 H 1.08995 * 108.86579 * 301.06647 * 19 18 17 36 36 H 1.08998 * 107.90882 * 223.26731 * 20 19 18 37 37 H 1.09006 * 109.49866 * 104.88776 * 20 19 18 38 38 H 1.08993 * 109.24147 * 144.62065 * 21 18 17 39 39 H 1.09001 * 109.23829 * 25.22722 * 21 18 17 40 40 H 1.08999 * 113.75647 * 220.98917 * 22 11 10 41 41 H 1.08998 * 113.76080 * 89.62597 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0058 8 1 3.0845 -1.1940 -0.0063 9 6 1.2510 -2.4991 -0.0116 10 6 0.7987 -2.9596 1.3859 11 7 1.2179 -4.3151 0.9661 12 6 1.9379 -5.0017 2.0471 13 1 2.6722 -4.3178 2.4726 14 6 2.6670 -6.2134 1.4660 15 6 3.5144 -6.8615 2.5635 16 6 2.7362 -7.9833 3.2364 17 6 1.6128 -7.4860 4.1226 18 7 1.6363 -6.0237 4.2658 19 6 2.9397 -5.4998 4.6030 20 6 3.9648 -5.7805 3.5299 21 6 0.9443 -5.3953 3.1298 22 6 2.1615 -3.7402 -0.0178 23 1 -0.4850 0.8400 0.0042 24 1 0.4615 -2.5305 -0.7626 25 1 1.3962 -2.5472 2.1988 26 1 -0.2739 -2.8641 1.5539 27 1 1.9380 -6.9332 1.0936 28 1 3.3137 -5.8925 0.6494 29 1 4.4009 -7.2931 2.0986 30 1 3.4248 -8.5724 3.8422 31 1 2.3140 -8.6276 2.4651 32 1 1.7103 -7.9408 5.1084 33 1 0.6595 -7.7847 3.6868 34 1 2.8619 -4.4209 4.7367 35 1 3.2671 -5.9467 5.5417 36 1 4.8833 -6.1034 4.0201 37 1 4.1658 -4.8665 2.9708 38 1 0.4197 -4.5050 3.4766 39 1 0.2218 -6.0986 2.7157 40 1 2.1777 -4.2683 -0.9712 41 1 3.1576 -3.5561 0.3847 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254852257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:08 Heat of formation + Delta-G solvation = 38.095332 kcal Electronic energy + Delta-G solvation = -19610.984578 eV Core-core repulsion = 16912.333690 eV Total energy + Delta-G solvation = -2698.650888 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79344 -38.26888 -33.48966 -32.99012 -31.71591 -31.26276 -27.36642 -25.93774 -24.72548 -24.09622 -23.22864 -22.46824 -19.61123 -18.65948 -17.88559 -16.72777 -16.46523 -15.93542 -15.10836 -14.60302 -14.25432 -13.86477 -13.60876 -13.32141 -12.98033 -12.88700 -12.64179 -12.22092 -12.14351 -12.01843 -11.47739 -11.31825 -11.05637 -10.94200 -10.67247 -10.58162 -10.46177 -10.27841 -10.15207 -9.94274 -9.65981 -9.11853 -8.96329 -8.43916 -7.96439 -7.79223 -6.04241 -4.08844 3.29963 3.35250 3.37252 4.05485 4.40531 4.59329 4.70034 4.83491 5.03501 5.16443 5.17845 5.27143 5.28460 5.35223 5.49109 5.56156 5.66562 5.74960 5.85803 5.91540 6.01821 6.04575 6.08645 6.13921 6.23472 6.26760 6.29140 6.34149 6.44677 6.57541 6.60981 6.66904 6.84881 7.15997 7.22957 7.31992 7.49032 7.73624 7.92868 8.13235 8.38387 8.93460 9.55942 11.05120 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.005481 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.360190 B = 5106.923994 C = 5154.444778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.039 3.961 10 C 0.014 3.986 11 N -0.487 5.487 12 C 0.020 3.980 13 H 0.049 0.951 14 C -0.105 4.105 15 C -0.082 4.082 16 C -0.141 4.141 17 C 0.066 3.934 18 N -0.559 5.559 19 C 0.080 3.920 20 C -0.151 4.151 21 C 0.082 3.918 22 C 0.001 3.999 23 H 0.262 0.738 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -13.544 7.387 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.114 4.114 11 N -0.211 5.211 12 C -0.090 4.090 13 H 0.067 0.933 14 C -0.143 4.143 15 C -0.101 4.101 16 C -0.180 4.180 17 C -0.062 4.062 18 N -0.281 5.281 19 C -0.049 4.049 20 C -0.191 4.191 21 C -0.045 4.045 22 C -0.127 4.127 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.269 -13.791 7.571 16.301 hybrid contribution 1.724 1.259 -0.322 2.159 sum 5.993 -12.531 7.250 15.668 Atomic orbital electron populations 1.69951 1.05956 1.26817 1.49630 1.24999 0.94806 0.99061 0.94677 0.86702 0.79679 0.83241 0.78633 1.21205 1.20303 1.20188 1.21048 0.92652 0.90468 1.51532 0.92686 1.20308 0.93942 0.90943 0.92791 1.24014 0.99825 0.86671 1.00922 1.68497 1.26806 1.16409 1.09353 1.22737 0.95904 0.96307 0.94094 0.93281 1.21668 0.98334 0.97264 0.97035 1.20572 0.98256 0.95329 0.95963 1.21654 0.98597 0.97924 0.99811 1.21807 0.97952 0.87676 0.98778 1.59661 1.22405 1.04459 1.41535 1.20964 0.86598 1.00412 0.96883 1.21729 0.99574 0.99560 0.98188 1.21895 0.95328 0.99670 0.87656 1.24000 0.95459 0.97774 0.95515 0.92823 0.92284 0.93047 0.91501 0.91636 0.91895 0.91803 0.92512 0.91889 0.91562 0.91188 0.91121 0.91291 0.92596 0.91119 0.90893 0.90873 0.91967 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.27 55.43 0.74 -24.88 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.19 8.77 -34.44 -0.30 -14.49 16 8 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.04 0.99 3.61 -90.84 -0.33 0.66 16 10 C 0.01 0.33 6.63 -2.77 -0.02 0.31 16 11 N -0.49 -9.81 5.96 -230.99 -1.38 -11.18 16 12 C 0.02 0.34 1.11 -68.21 -0.08 0.26 16 13 H 0.05 0.90 4.72 -51.93 -0.25 0.65 16 14 C -0.11 -1.55 4.92 -26.76 -0.13 -1.68 16 15 C -0.08 -1.01 2.83 -91.58 -0.26 -1.27 16 16 C -0.14 -1.53 5.34 -27.90 -0.15 -1.68 16 17 C 0.07 0.76 5.95 -4.57 -0.03 0.73 16 18 N -0.56 -7.64 4.62 -239.21 -1.11 -8.75 16 19 C 0.08 1.02 5.38 -6.12 -0.03 0.99 16 20 C -0.15 -1.89 5.05 -28.31 -0.14 -2.04 16 21 C 0.08 1.28 5.44 -4.15 -0.02 1.26 16 22 C 0.00 0.03 6.29 -2.77 -0.02 0.01 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.06 1.63 8.13 -51.93 -0.42 1.21 16 25 H 0.05 1.21 7.67 -51.93 -0.40 0.81 16 26 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.06 0.98 7.63 -51.93 -0.40 0.58 16 28 H 0.06 0.97 7.19 -51.93 -0.37 0.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.66 7.84 -51.92 -0.41 0.25 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16 34 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.00 6.28 -51.93 -0.33 0.67 16 38 H 0.07 1.26 7.45 -51.93 -0.39 0.87 16 39 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.08 7.78 -51.93 -0.40 0.68 16 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -27.73 301.81 -10.86 -38.58 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.03 Total: 0.72 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.60 Total: -15.17 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -1.75 Total: -44.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.73 -10.86 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254852257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.678 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds