Wall clock time and date at job start Sun Mar 29 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 11 11 N 1.48189 * 86.09920 * 221.95783 * 10 9 7 12 12 C 1.46509 * 111.06748 * 137.51955 * 11 10 9 13 13 H 1.12063 * 105.65264 * 316.41346 * 12 11 10 14 14 C 1.53235 * 112.67696 * 72.69614 * 12 11 10 15 15 C 1.52183 * 113.14531 * 79.35251 * 14 12 11 16 16 C 1.52251 * 111.69877 * 88.23483 * 15 14 12 17 17 C 1.52493 * 111.56635 * 275.73139 * 16 15 14 18 18 N 1.43964 * 110.22822 * 10.84125 * 17 16 15 19 19 C 1.46498 * 111.30181 * 294.58581 * 18 17 16 20 20 C 1.51720 * 112.79622 * 319.93294 * 15 14 12 21 21 C 1.42933 * 117.94067 * 71.36326 * 18 17 16 22 22 C 1.47960 * 90.80220 * 24.60019 * 11 10 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09004 * 112.93940 * 50.33338 * 9 7 2 25 25 H 1.08996 * 113.75681 * 336.24186 * 10 9 7 26 26 H 1.08999 * 113.75828 * 107.60395 * 10 9 7 27 27 H 1.10310 * 109.43504 * 201.48507 * 14 12 11 28 28 H 1.10358 * 109.36148 * 317.43085 * 14 12 11 29 29 H 1.11186 * 106.79233 * 203.48474 * 15 14 12 30 30 H 1.08977 * 109.00234 * 155.30019 * 16 15 14 31 31 H 1.08951 * 109.09538 * 36.28838 * 16 15 14 32 32 H 1.08783 * 109.29856 * 250.83614 * 17 16 15 33 33 H 1.08781 * 109.30527 * 130.84496 * 17 16 15 34 34 H 1.08676 * 110.36554 * 182.45220 * 19 18 17 35 35 H 1.09496 * 108.98451 * 301.48897 * 19 18 17 36 36 H 1.09866 * 108.47137 * 198.58560 * 20 15 14 37 37 H 1.08696 * 110.37777 * 316.03897 * 20 15 14 38 38 H 1.10005 * 108.18837 * 143.35068 * 21 18 17 39 39 H 1.10011 * 108.16572 * 28.83394 * 21 18 17 40 40 H 1.09000 * 113.75922 * 221.08463 * 22 11 10 41 41 H 1.08996 * 113.85941 * 89.73133 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.7557 -2.9287 1.3923 11 7 1.1893 -4.2943 1.0139 12 6 1.8758 -4.9560 2.1263 13 1 2.5633 -4.1842 2.5593 14 6 0.9178 -5.3751 3.2464 15 6 0.1623 -6.6597 2.9380 16 6 0.9373 -7.8904 3.3882 17 6 1.9549 -8.3267 2.3396 18 7 2.0858 -7.3164 1.3224 19 6 0.8436 -7.1638 0.5609 20 6 -0.2872 -6.7444 1.4914 21 6 2.7464 -6.0975 1.6702 22 6 2.1610 -3.7400 0.0456 23 1 -0.4850 0.8401 0.0004 24 1 0.4834 -2.5465 -0.7730 25 1 1.3280 -2.4980 2.2139 26 1 -0.3216 -2.8297 1.5251 27 1 1.4834 -5.5013 4.1850 28 1 0.1929 -4.5636 3.4305 29 1 -0.7639 -6.6431 3.5528 30 1 0.2366 -8.7063 3.5639 31 1 1.4591 -7.6629 4.3172 32 1 1.6225 -9.2552 1.8805 33 1 2.9202 -8.4802 2.8171 34 1 0.9724 -6.4293 -0.2297 35 1 0.5860 -8.1247 0.1034 36 1 -1.0851 -7.4961 1.4183 37 1 -0.7046 -5.7941 1.1685 38 1 3.3318 -5.7641 0.8006 39 1 3.4764 -6.3172 2.4633 40 1 2.2043 -4.2880 -0.8956 41 1 3.1458 -3.5468 0.4708 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254852258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:09 Heat of formation + Delta-G solvation = 34.877353 kcal Electronic energy + Delta-G solvation = -19790.708527 eV Core-core repulsion = 17091.918097 eV Total energy + Delta-G solvation = -2698.790430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51013 -38.13595 -33.35725 -33.03171 -31.75197 -30.78879 -27.43373 -25.90820 -24.69581 -24.21715 -22.87773 -22.71689 -19.29867 -18.51403 -17.91165 -16.71301 -16.12454 -15.82080 -14.98114 -14.56662 -14.25502 -13.80769 -13.73716 -13.08122 -12.81815 -12.63461 -12.47365 -12.06445 -11.92724 -11.89347 -11.40952 -11.23475 -11.06381 -10.94089 -10.66086 -10.54289 -10.39178 -10.16227 -9.97842 -9.88322 -9.56024 -9.06156 -8.96215 -8.42574 -7.82927 -7.56700 -6.04141 -4.08331 3.30111 3.35262 3.37518 4.22769 4.40733 4.68163 4.90879 4.92369 4.99874 5.20108 5.28635 5.34860 5.45804 5.56803 5.58630 5.62950 5.72918 5.82033 5.97039 6.02985 6.07966 6.14862 6.21441 6.24837 6.29100 6.40333 6.41345 6.50010 6.57492 6.63278 6.70516 6.80138 6.91154 7.17287 7.31213 7.57650 7.74837 7.82534 7.94039 8.16596 8.39235 8.93940 9.56403 11.05216 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.045092 B = 0.005549 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.805179 B = 5044.536130 C = 5135.196824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.040 3.960 10 C 0.017 3.983 11 N -0.478 5.478 12 C 0.031 3.969 13 H 0.031 0.969 14 C -0.096 4.096 15 C -0.070 4.070 16 C -0.150 4.150 17 C 0.086 3.914 18 N -0.577 5.577 19 C 0.091 3.909 20 C -0.130 4.130 21 C 0.104 3.896 22 C 0.003 3.997 23 H 0.261 0.739 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -14.101 5.387 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.112 4.112 11 N -0.201 5.201 12 C -0.080 4.080 13 H 0.049 0.951 14 C -0.134 4.134 15 C -0.090 4.090 16 C -0.190 4.190 17 C -0.042 4.042 18 N -0.298 5.298 19 C -0.036 4.036 20 C -0.170 4.170 21 C -0.024 4.024 22 C -0.126 4.126 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.434 -14.625 4.964 15.511 hybrid contribution 0.511 1.856 1.215 2.276 sum 1.945 -12.769 6.179 14.318 Atomic orbital electron populations 1.69957 1.05952 1.26754 1.49792 1.25001 0.94799 0.99053 0.94745 0.86703 0.79665 0.83252 0.78638 1.21276 1.20339 1.20168 1.21065 0.92704 0.90484 1.51369 0.92630 1.20272 0.93720 0.90995 0.92879 1.24049 0.99661 0.86483 1.00959 1.68213 1.26259 1.16249 1.09401 1.22517 0.95173 0.96814 0.93495 0.95095 1.21690 0.98294 0.96957 0.96431 1.20461 0.97732 0.93812 0.96948 1.22120 0.99157 0.97968 0.99743 1.21195 0.97829 0.94238 0.90954 1.56223 1.29364 1.13278 1.30917 1.21523 0.86229 1.00287 0.95557 1.21606 0.98349 1.02675 0.94327 1.20713 0.94595 0.86936 1.00187 1.23992 0.95254 0.97676 0.95661 0.92888 0.92497 0.93170 0.91764 0.92975 0.92081 0.93229 0.92497 0.92471 0.91367 0.91840 0.89732 0.92862 0.94143 0.89763 0.91669 0.92788 0.91839 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.03 8.77 -34.44 -0.30 -14.33 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 1.00 3.60 -90.83 -0.33 0.67 16 10 C 0.02 0.39 6.79 -2.63 -0.02 0.37 16 11 N -0.48 -9.18 3.35 -230.31 -0.77 -9.96 16 12 C 0.03 0.52 1.27 -68.99 -0.09 0.43 16 13 H 0.03 0.57 7.49 -50.15 -0.38 0.19 16 14 C -0.10 -1.46 5.11 -27.03 -0.14 -1.60 16 15 C -0.07 -0.97 2.36 -92.07 -0.22 -1.19 16 16 C -0.15 -1.76 5.68 -27.37 -0.16 -1.92 16 17 C 0.09 1.02 5.90 -5.65 -0.03 0.99 16 18 N -0.58 -8.12 4.13 -242.08 -1.00 -9.12 16 19 C 0.09 1.32 5.40 -4.38 -0.02 1.29 16 20 C -0.13 -1.89 4.89 -27.72 -0.14 -2.03 16 21 C 0.10 1.57 5.08 -7.11 -0.04 1.54 16 22 C 0.00 0.05 6.17 -2.76 -0.02 0.04 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.05 1.18 7.52 -51.93 -0.39 0.79 16 26 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.05 0.73 7.72 -51.18 -0.40 0.34 16 28 H 0.06 1.02 7.62 -51.15 -0.39 0.63 16 29 H 0.05 0.67 8.26 -50.67 -0.42 0.25 16 30 H 0.06 0.60 8.14 -51.94 -0.42 0.18 16 31 H 0.06 0.65 7.62 -51.96 -0.40 0.25 16 32 H 0.07 0.74 8.06 -52.05 -0.42 0.32 16 33 H 0.06 0.70 7.95 -52.05 -0.41 0.28 16 34 H 0.08 1.38 7.34 -52.11 -0.38 1.00 16 35 H 0.05 0.70 8.14 -51.65 -0.42 0.27 16 36 H 0.04 0.53 8.21 -51.44 -0.42 0.11 16 37 H 0.08 1.43 7.15 -52.10 -0.37 1.05 16 38 H 0.07 1.05 6.87 -51.36 -0.35 0.70 16 39 H 0.05 0.75 7.86 -51.35 -0.40 0.35 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.08 7.62 -51.93 -0.40 0.68 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -27.14 302.22 -10.28 -37.42 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.18 Total: -0.19 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.59 Total: -14.01 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -1.04 Total: -43.84 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.14 -10.28 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254852258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.293 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds