Wall clock time and date at job start Sun Mar 29 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 11 11 N 1.48189 * 86.09920 * 221.95783 * 10 9 7 12 12 C 1.46509 * 111.06748 * 137.51955 * 11 10 9 13 13 H 1.12063 * 105.65264 * 316.41346 * 12 11 10 14 14 C 1.53235 * 112.67696 * 72.69614 * 12 11 10 15 15 C 1.52183 * 113.14531 * 79.35251 * 14 12 11 16 16 C 1.52251 * 111.69877 * 88.23483 * 15 14 12 17 17 C 1.52493 * 111.56635 * 275.73139 * 16 15 14 18 18 N 1.43964 * 110.22822 * 10.84125 * 17 16 15 19 19 C 1.46498 * 111.30181 * 294.58581 * 18 17 16 20 20 C 1.51720 * 112.79622 * 319.93294 * 15 14 12 21 21 C 1.42933 * 117.94067 * 71.36326 * 18 17 16 22 22 C 1.47960 * 90.80220 * 24.60019 * 11 10 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09004 * 112.93940 * 50.33338 * 9 7 2 25 25 H 1.08996 * 113.75681 * 336.24186 * 10 9 7 26 26 H 1.08999 * 113.75828 * 107.60395 * 10 9 7 27 27 H 1.10310 * 109.43504 * 201.48507 * 14 12 11 28 28 H 1.10358 * 109.36148 * 317.43085 * 14 12 11 29 29 H 1.11186 * 106.79233 * 203.48474 * 15 14 12 30 30 H 1.08977 * 109.00234 * 155.30019 * 16 15 14 31 31 H 1.08951 * 109.09538 * 36.28838 * 16 15 14 32 32 H 1.08783 * 109.29856 * 250.83614 * 17 16 15 33 33 H 1.08781 * 109.30527 * 130.84496 * 17 16 15 34 34 H 1.08676 * 110.36554 * 182.45220 * 19 18 17 35 35 H 1.09496 * 108.98451 * 301.48897 * 19 18 17 36 36 H 1.09866 * 108.47137 * 198.58560 * 20 15 14 37 37 H 1.08696 * 110.37777 * 316.03897 * 20 15 14 38 38 H 1.10005 * 108.18837 * 143.35068 * 21 18 17 39 39 H 1.10011 * 108.16572 * 28.83394 * 21 18 17 40 40 H 1.09000 * 113.75922 * 221.08463 * 22 11 10 41 41 H 1.08996 * 113.85941 * 89.73133 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.7557 -2.9287 1.3923 11 7 1.1893 -4.2943 1.0139 12 6 1.8758 -4.9560 2.1263 13 1 2.5633 -4.1842 2.5593 14 6 0.9178 -5.3751 3.2464 15 6 0.1623 -6.6597 2.9380 16 6 0.9373 -7.8904 3.3882 17 6 1.9549 -8.3267 2.3396 18 7 2.0858 -7.3164 1.3224 19 6 0.8436 -7.1638 0.5609 20 6 -0.2872 -6.7444 1.4914 21 6 2.7464 -6.0975 1.6702 22 6 2.1610 -3.7400 0.0456 23 1 -0.4850 0.8401 0.0004 24 1 0.4834 -2.5465 -0.7730 25 1 1.3280 -2.4980 2.2139 26 1 -0.3216 -2.8297 1.5251 27 1 1.4834 -5.5013 4.1850 28 1 0.1929 -4.5636 3.4305 29 1 -0.7639 -6.6431 3.5528 30 1 0.2366 -8.7063 3.5639 31 1 1.4591 -7.6629 4.3172 32 1 1.6225 -9.2552 1.8805 33 1 2.9202 -8.4802 2.8171 34 1 0.9724 -6.4293 -0.2297 35 1 0.5860 -8.1247 0.1034 36 1 -1.0851 -7.4961 1.4183 37 1 -0.7046 -5.7941 1.1685 38 1 3.3318 -5.7641 0.8006 39 1 3.4764 -6.3172 2.4633 40 1 2.2043 -4.2880 -0.8956 41 1 3.1458 -3.5468 0.4708 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254852258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:09 Heat of formation + Delta-G solvation = 19.007986 kcal Electronic energy + Delta-G solvation = -19791.396675 eV Core-core repulsion = 17091.918097 eV Total energy + Delta-G solvation = -2699.478577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79467 -39.71074 -34.93571 -34.43358 -33.36147 -31.84524 -29.23383 -27.37229 -26.35683 -25.72030 -24.23124 -23.91711 -20.88082 -20.14252 -19.02132 -18.59220 -17.46947 -17.15807 -16.52058 -16.08412 -15.93220 -15.24011 -15.18190 -14.31451 -14.11313 -13.92666 -13.88377 -13.56948 -13.35007 -13.21308 -12.95440 -12.88727 -12.72298 -12.56221 -12.26632 -12.18902 -11.65538 -11.53980 -11.16225 -11.09985 -11.04424 -10.99399 -10.81363 -10.49982 -9.45422 -8.75121 -8.15412 -6.26833 1.41247 1.42515 1.50372 2.41329 3.03935 3.14148 3.27243 3.75371 3.78531 3.83365 3.98790 4.22671 4.31240 4.33268 4.42484 4.51752 4.52768 4.57554 4.58809 4.62748 4.68784 4.71282 4.90327 4.99476 5.02185 5.07721 5.14175 5.16981 5.20420 5.25567 5.32905 5.33982 5.43733 5.59104 5.63432 5.69702 5.86221 6.30479 6.42888 6.49227 6.75693 6.81976 7.41472 8.93671 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.045092 B = 0.005549 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.805179 B = 5044.536130 C = 5135.196824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.031 3.969 11 N -0.464 5.464 12 C 0.032 3.968 13 H 0.016 0.984 14 C -0.094 4.094 15 C -0.071 4.071 16 C -0.144 4.144 17 C 0.083 3.917 18 N -0.579 5.579 19 C 0.093 3.907 20 C -0.129 4.129 21 C 0.109 3.891 22 C 0.021 3.979 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -15.791 6.350 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.210 1.210 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.075 0.925 9 C 0.004 3.996 10 C -0.098 4.098 11 N -0.187 5.187 12 C -0.079 4.079 13 H 0.034 0.966 14 C -0.132 4.132 15 C -0.091 4.091 16 C -0.183 4.183 17 C -0.044 4.044 18 N -0.300 5.300 19 C -0.035 4.035 20 C -0.168 4.168 21 C -0.020 4.020 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.675 -16.337 5.929 17.584 hybrid contribution 0.098 2.335 0.901 2.505 sum 2.772 -14.002 6.830 15.824 Atomic orbital electron populations 1.70088 1.07479 1.27561 1.50883 1.25805 0.95590 1.02593 0.94401 0.85650 0.78401 0.78880 0.78971 1.21012 1.19591 1.19355 1.21410 0.92940 0.91727 1.51093 0.92540 1.20246 0.94072 0.92234 0.93016 1.23711 0.98225 0.88562 0.99352 1.68171 1.26245 1.14203 1.10088 1.22624 0.95314 0.97096 0.92849 0.96629 1.21704 0.97772 0.97240 0.96489 1.20469 0.98105 0.94072 0.96409 1.22056 0.99263 0.97094 0.99889 1.21349 0.98729 0.93833 0.90525 1.56245 1.28988 1.12919 1.31831 1.21466 0.86467 1.00499 0.95035 1.21553 0.98887 1.01433 0.94940 1.20617 0.94377 0.86713 1.00283 1.23793 0.94765 0.95645 0.96560 0.92908 0.95835 0.94203 0.93646 0.91143 0.94341 0.92880 0.90783 0.91592 0.89863 0.90442 0.92257 0.90941 0.92518 0.93004 0.92857 0.90797 0.90765 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.47 13.29 21.45 0.28 -54.19 16 2 C 0.02 0.86 5.46 84.66 0.46 1.32 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -29.52 8.77 25.60 0.22 -29.29 16 8 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.02 1.20 3.60 -10.89 -0.04 1.16 16 10 C 0.03 1.45 6.79 86.37 0.59 2.03 16 11 N -0.46 -18.21 3.35 -882.58 -2.96 -21.17 16 12 C 0.03 1.06 1.27 44.30 0.06 1.12 16 13 H 0.02 0.57 7.49 -0.71 -0.01 0.56 16 14 C -0.09 -2.78 5.11 30.40 0.16 -2.62 16 15 C -0.07 -1.82 2.36 -11.73 -0.03 -1.85 16 16 C -0.14 -2.82 5.68 30.18 0.17 -2.65 16 17 C 0.08 1.64 5.90 86.68 0.51 2.15 16 18 N -0.58 -14.76 4.13 -919.81 -3.80 -18.56 16 19 C 0.09 2.52 5.40 86.16 0.46 2.99 16 20 C -0.13 -3.59 4.89 29.95 0.15 -3.44 16 21 C 0.11 3.08 5.08 86.27 0.44 3.52 16 22 C 0.02 0.87 6.17 86.41 0.53 1.41 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.04 1.94 7.52 -2.39 -0.02 1.92 16 26 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 1.83 7.72 -1.68 -0.01 1.81 16 28 H 0.04 1.29 7.62 -1.66 -0.01 1.28 16 29 H 0.05 1.33 8.26 -1.20 -0.01 1.32 16 30 H 0.07 1.24 8.14 -2.40 -0.02 1.22 16 31 H 0.07 1.21 7.62 -2.41 -0.02 1.19 16 32 H 0.08 1.43 8.06 -2.50 -0.02 1.41 16 33 H 0.08 1.35 7.95 -2.50 -0.02 1.33 16 34 H 0.06 1.91 7.34 -2.56 -0.02 1.90 16 35 H 0.07 1.70 8.14 -2.12 -0.02 1.69 16 36 H 0.06 1.38 8.21 -1.92 -0.02 1.37 16 37 H 0.05 1.78 7.15 -2.55 -0.02 1.76 16 38 H 0.05 1.64 6.87 -1.85 -0.01 1.63 16 39 H 0.07 1.83 7.86 -1.85 -0.01 1.81 16 40 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.06 2.30 7.62 -2.39 -0.02 2.28 16 Total: -1.00 -59.23 302.22 0.25 -58.98 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.02 Total: 13.48 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.68 Total: -24.16 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -6.48 Total: -93.92 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -59.23 0.25 -58.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254852258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.992 kcal (2) G-P(sol) polarization free energy of solvation -59.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds