Wall clock time and date at job start Sun Mar 29 2020 22:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47060 * 2 1 4 4 H 1.08997 * 109.46888 * 298.61905 * 3 2 1 5 5 C 1.53005 * 109.46700 * 178.62342 * 3 2 1 6 6 C 1.47203 * 109.46634 * 173.36406 * 5 3 2 7 7 N 4.86172 * 126.84537 * 356.32660 * 2 1 3 8 8 N 1.46895 * 109.47068 * 58.62495 * 3 2 1 9 9 C 1.46905 * 111.00166 * 73.39063 * 8 3 2 10 10 C 1.50696 * 109.47114 * 202.92383 * 9 8 3 11 11 H 1.08004 * 119.99966 * 0.64106 * 10 9 8 12 12 C 1.37881 * 119.99917 * 180.63398 * 10 9 8 13 13 N 1.31507 * 119.99841 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99937 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47283 * 89.99907 * 14 12 10 16 16 H 1.48496 * 109.46907 * 210.00210 * 14 12 10 17 17 H 1.48497 * 109.47038 * 329.99942 * 14 12 10 18 18 C 1.46903 * 110.99790 * 197.34470 * 8 3 2 19 19 C 1.54263 * 110.03094 * 166.12569 * 18 8 3 20 20 C 1.54890 * 104.19748 * 217.10266 * 19 18 8 21 21 C 1.54893 * 102.74586 * 37.94295 * 20 19 18 22 22 C 1.53876 * 110.03096 * 48.95990 * 18 8 3 23 23 H 1.08998 * 109.46803 * 64.90114 * 1 2 3 24 24 H 1.09000 * 109.47023 * 184.89682 * 1 2 3 25 25 H 1.09001 * 109.47101 * 304.89976 * 1 2 3 26 26 H 1.09001 * 109.47145 * 239.99790 * 2 1 3 27 27 H 1.09003 * 109.46862 * 120.00080 * 2 1 3 28 28 H 1.08995 * 109.47183 * 293.36732 * 5 3 2 29 29 H 1.09003 * 109.47039 * 53.36994 * 5 3 2 30 30 H 1.09001 * 109.46846 * 322.92816 * 9 8 3 31 31 H 1.09006 * 109.46966 * 82.92360 * 9 8 3 32 32 H 0.97001 * 119.99924 * 179.97438 * 13 12 10 33 33 H 1.09001 * 110.01683 * 287.56588 * 18 8 3 34 34 H 1.09002 * 110.48897 * 335.78336 * 19 18 8 35 35 H 1.09001 * 110.48678 * 98.42829 * 19 18 8 36 36 H 1.08999 * 110.75920 * 279.63150 * 20 19 18 37 37 H 1.08996 * 110.75981 * 156.25631 * 20 19 18 38 38 H 1.08996 * 110.48726 * 203.38213 * 21 20 19 39 39 H 1.09004 * 110.59765 * 80.79062 * 21 20 19 40 40 H 1.09005 * 110.02672 * 238.56936 * 22 18 8 41 41 H 1.08995 * 110.03283 * 359.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6971 1.9491 -0.9021 5 6 3.5697 1.4425 0.0347 6 6 4.0640 2.8198 -0.1256 7 7 4.4454 3.8826 -0.2493 8 7 1.5234 2.1445 1.1824 9 6 2.2088 1.6963 2.4020 10 6 1.3351 1.9704 3.5989 11 1 0.3631 2.4220 3.4658 12 6 1.7765 1.6446 4.8638 13 7 2.9602 1.0950 5.0259 14 14 0.6932 1.9837 6.3473 15 1 -0.1666 0.8025 6.6128 16 1 1.5467 2.2513 7.5326 17 1 -0.1617 3.1672 6.0757 18 6 1.6348 3.6003 1.0207 19 6 0.7873 4.3173 2.0919 20 6 0.2023 5.5467 1.3534 21 6 -0.1060 4.9836 -0.0563 22 6 1.0668 4.0239 -0.3452 23 1 -0.3633 0.4359 -0.9306 24 1 -0.3633 -1.0239 0.0877 25 1 -0.3633 0.5880 0.8429 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.9115 1.0425 0.9892 29 1 3.9515 0.8228 -0.7767 30 1 2.4079 0.6267 2.3347 31 1 3.1504 2.2350 2.5085 32 1 3.2710 0.8662 5.9158 33 1 2.6778 3.9061 1.1025 34 1 -0.0135 3.6666 2.4433 35 1 1.4146 4.6355 2.9246 36 1 0.9377 6.3492 1.2964 37 1 -0.7102 5.8913 1.8397 38 1 -0.1305 5.7880 -0.7914 39 1 -1.0513 4.4409 -0.0542 40 1 1.8340 4.5360 -0.9259 41 1 0.7089 3.1492 -0.8882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:46 Heat of formation + Delta-G solvation = 26.274683 kcal Electronic energy + Delta-G solvation = -19814.465032 eV Core-core repulsion = 17115.301562 eV Total energy + Delta-G solvation = -2699.163470 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.39481 -36.35864 -35.49406 -33.07235 -31.61769 -29.90225 -28.55159 -27.17215 -25.74853 -23.91457 -22.18790 -20.37669 -19.82600 -18.24476 -17.15163 -16.67751 -15.50541 -15.33323 -14.80018 -14.44723 -14.01324 -13.56684 -13.28610 -12.87409 -12.70043 -12.56247 -12.20949 -12.12301 -11.84209 -11.73687 -11.26754 -10.98060 -10.88406 -10.76906 -10.71114 -10.60828 -10.50418 -10.30502 -10.23559 -10.12363 -10.01383 -9.84883 -9.40608 -8.90760 -8.37382 -7.24411 -6.00361 -3.99034 3.12632 3.17108 3.32784 3.39718 3.42672 4.36915 4.43078 4.78053 5.11647 5.21703 5.27281 5.34435 5.38133 5.50495 5.61201 5.74476 5.84598 5.95810 5.98521 6.08759 6.12095 6.19995 6.23238 6.28611 6.30553 6.37358 6.43959 6.49344 6.61185 6.67571 6.74724 7.00414 7.01501 7.11659 7.25695 7.36044 7.89723 7.94118 8.13202 8.21925 8.55570 9.08078 9.64199 11.10316 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.009187 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.282608 B = 3047.050484 C = 3508.347743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.079 3.921 4 H 0.084 0.916 5 C -0.073 4.073 6 C 0.220 3.780 7 N -0.451 5.451 8 N -0.516 5.516 9 C 0.189 3.811 10 C -0.498 4.498 11 H 0.071 0.929 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.891 3.109 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.274 1.274 18 C 0.082 3.918 19 C -0.099 4.099 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.128 4.128 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.034 0.966 31 H -0.007 1.007 32 H 0.259 0.741 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 -0.109 -10.551 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.032 4.032 4 H 0.102 0.898 5 C -0.115 4.115 6 C -0.097 4.097 7 N -0.128 5.128 8 N -0.240 5.240 9 C 0.065 3.935 10 C -0.537 4.537 11 H 0.089 0.911 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.719 3.281 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.199 1.199 18 C -0.027 4.027 19 C -0.137 4.137 20 C -0.169 4.169 21 C -0.153 4.153 22 C -0.166 4.166 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.121 0.879 30 H 0.052 0.948 31 H 0.010 0.990 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.430 1.301 -10.539 11.160 hybrid contribution 0.430 -0.079 0.974 1.067 sum -3.000 1.222 -9.566 10.100 Atomic orbital electron populations 1.21602 0.95148 1.00646 1.02332 1.21478 0.97107 0.94478 1.01520 1.21987 0.87955 0.96703 0.96508 0.89847 1.20302 1.00013 0.85229 1.05941 1.29105 0.92740 0.95180 0.92645 1.81133 1.09992 1.12094 1.09603 1.62473 1.56398 1.02886 1.02241 1.19830 0.92559 0.95646 0.85511 1.21352 1.02944 1.39362 0.90011 0.91088 1.24960 0.95086 0.95661 0.98949 1.69935 1.18373 1.43219 1.22579 0.86608 0.80381 0.78633 0.82472 1.20784 1.21576 1.19865 1.22296 0.97771 0.88791 0.93805 1.22478 1.00018 0.94608 0.96608 1.22580 0.99973 0.98446 0.95877 1.22242 0.98427 0.97896 0.96763 1.22446 0.97496 0.99032 0.97608 0.94193 0.94075 0.90127 0.92706 0.90973 0.86304 0.87942 0.94839 0.98956 0.93116 0.94218 0.89216 0.91940 0.92668 0.92262 0.93013 0.91739 0.93113 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.82 37.16 0.36 -1.59 16 2 C -0.11 -1.48 5.40 -26.73 -0.14 -1.62 16 3 C 0.08 1.19 1.68 -67.71 -0.11 1.08 16 4 H 0.08 1.17 5.22 -51.93 -0.27 0.90 16 5 C -0.07 -1.05 4.74 -29.51 -0.14 -1.19 16 6 C 0.22 3.73 12.14 -20.76 -0.25 3.48 16 7 N -0.45 -8.55 17.68 42.15 0.75 -7.81 16 8 N -0.52 -9.66 3.29 -218.81 -0.72 -10.38 16 9 C 0.19 4.36 3.16 -4.97 -0.02 4.34 16 10 C -0.50 -12.84 7.82 -34.44 -0.27 -13.10 16 11 H 0.07 1.82 5.33 -52.48 -0.28 1.54 16 12 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 13 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 14 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 C 0.08 1.53 1.87 -66.59 -0.12 1.41 16 19 C -0.10 -1.92 4.76 -25.07 -0.12 -2.04 16 20 C -0.13 -2.09 6.91 -24.74 -0.17 -2.26 16 21 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 16 22 C -0.13 -2.03 5.43 -25.61 -0.14 -2.17 16 23 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.35 7.41 -51.93 -0.38 0.97 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 28 H 0.12 1.91 6.14 -51.93 -0.32 1.59 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.80 5.88 -51.93 -0.31 0.50 16 31 H -0.01 -0.19 7.10 -51.93 -0.37 -0.56 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.04 0.83 4.84 -51.93 -0.25 0.58 16 34 H 0.09 1.86 5.85 -51.93 -0.30 1.56 16 35 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.11 5.70 -51.93 -0.30 0.81 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -28.34 310.85 -7.45 -35.79 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.48 Total: 0.64 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.39 Total: -14.15 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.76 Total: -43.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.34 -7.45 -35.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.064 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds