Wall clock time and date at job start Sun Mar 29 2020 22:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48502 * 109.47242 * 240.00103 * 3 2 1 5 5 H 1.48504 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47255 * 119.99791 * 3 2 1 7 7 C 1.37875 * 120.00665 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53929 * 113.73605 * 278.77126 * 9 7 2 11 11 N 1.48186 * 86.10050 * 221.95623 * 10 9 7 12 12 C 1.46905 * 111.07096 * 137.52182 * 11 10 9 13 13 C 1.53114 * 109.52004 * 195.44006 * 12 11 10 14 14 C 1.53050 * 109.27701 * 182.50176 * 13 12 11 15 15 N 1.46850 * 109.57295 * 59.08245 * 14 13 12 16 16 C 1.46894 * 110.99903 * 174.19617 * 15 14 13 17 17 C 1.52995 * 117.50029 * 7.83355 * 16 15 14 18 18 C 1.52997 * 117.49980 * 299.20612 * 16 15 14 19 19 C 1.46853 * 111.19524 * 298.29318 * 15 14 13 20 20 C 1.53036 * 109.52663 * 61.74408 * 19 15 14 21 21 C 1.47957 * 90.80024 * 24.59999 * 11 10 9 22 22 H 0.96996 * 120.00369 * 0.02562 * 1 2 3 23 23 H 1.08998 * 112.93440 * 50.33708 * 9 7 2 24 24 H 1.09000 * 113.75938 * 336.23679 * 10 9 7 25 25 H 1.08998 * 113.76053 * 107.59970 * 10 9 7 26 26 H 1.08999 * 109.52090 * 315.56359 * 12 11 10 27 27 H 1.09006 * 109.50815 * 302.37706 * 13 12 11 28 28 H 1.09000 * 109.50759 * 62.49645 * 13 12 11 29 29 H 1.08998 * 109.40825 * 299.07263 * 14 13 12 30 30 H 1.08991 * 109.46404 * 179.13004 * 14 13 12 31 31 H 1.09004 * 115.54717 * 153.54074 * 16 15 14 32 32 H 1.08999 * 117.49861 * 359.97438 * 17 16 15 33 33 H 1.09004 * 117.50190 * 145.02477 * 17 16 15 34 34 H 1.09000 * 117.50186 * 214.97731 * 18 16 15 35 35 H 1.09003 * 117.49675 * 0.02562 * 18 16 15 36 36 H 1.09002 * 109.46202 * 301.72494 * 19 15 14 37 37 H 1.09006 * 109.45837 * 181.75764 * 19 15 14 38 38 H 1.08992 * 109.50607 * 180.87742 * 20 19 15 39 39 H 1.08999 * 109.50312 * 60.75781 * 20 19 15 40 40 H 1.09006 * 113.75754 * 221.08861 * 21 11 10 41 41 H 1.08999 * 113.75952 * 89.71874 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 0.7559 -2.9287 1.3922 11 7 1.1895 -4.2942 1.0139 12 6 1.8779 -4.9578 2.1292 13 6 2.6383 -6.1798 1.6068 14 6 3.3018 -6.9022 2.7816 15 7 2.2759 -7.3161 3.7474 16 6 2.8610 -8.1322 4.8195 17 6 4.3855 -8.2526 4.8639 18 6 3.5366 -9.4453 4.4193 19 6 1.5656 -6.1547 4.2979 20 6 0.8490 -5.4109 3.1687 21 6 2.1612 -3.7398 0.0456 22 1 -0.4850 0.8400 -0.0004 23 1 0.4837 -2.5465 -0.7730 24 1 1.3281 -2.4980 2.2139 25 1 -0.3214 -2.8297 1.5249 26 1 2.5791 -4.2621 2.5900 27 1 1.9426 -6.8566 1.1106 28 1 3.4016 -5.8580 0.8983 29 1 4.0082 -6.2297 3.2681 30 1 3.8313 -7.7815 2.4150 31 1 2.3297 -8.1091 5.7711 32 1 4.9544 -7.7265 4.0973 33 1 4.8577 -8.3087 5.8448 34 1 3.4502 -10.2860 5.1077 35 1 3.5473 -9.7034 3.3604 36 1 2.2803 -5.4857 4.7773 37 1 0.8341 -6.4912 5.0326 38 1 0.3348 -4.5402 3.5753 39 1 0.1244 -6.0752 2.6978 40 1 2.2046 -4.2879 -0.8957 41 1 3.1454 -3.5470 0.4726 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256072972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:53 Heat of formation + Delta-G solvation = 61.192133 kcal Electronic energy + Delta-G solvation = -18782.591711 eV Core-core repulsion = 16084.942375 eV Total energy + Delta-G solvation = -2697.649336 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87155 -38.47655 -35.69960 -32.70099 -31.28767 -30.70850 -27.39883 -25.13688 -24.66618 -23.00634 -22.47628 -22.10108 -20.44383 -19.24912 -18.54165 -16.92406 -16.42230 -15.50149 -14.93319 -14.58732 -14.36404 -14.23026 -13.79338 -13.53706 -13.51904 -12.57687 -12.19706 -12.05494 -11.94215 -11.69549 -11.45434 -11.29357 -11.02230 -10.94116 -10.90400 -10.76976 -10.49543 -10.45127 -10.40403 -9.89334 -9.59518 -9.07690 -8.94737 -8.42714 -8.17109 -7.81743 -6.03857 -4.08419 3.29974 3.35167 3.37274 3.52970 3.91529 4.40515 4.65293 4.74377 4.76369 4.88397 4.94265 5.06510 5.26966 5.36690 5.43626 5.44881 5.48542 5.57843 5.68953 5.75466 5.85151 5.88399 5.90917 5.95478 6.10061 6.16044 6.27290 6.37152 6.45309 6.58308 6.68142 6.69154 6.87799 7.05483 7.09996 7.17864 7.29132 7.74617 7.93847 8.15286 8.38978 8.93737 9.56293 11.05537 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.043420 B = 0.004321 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.708033 B = 6478.689408 C = 6556.463530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.039 3.961 10 C 0.015 3.985 11 N -0.486 5.486 12 C 0.052 3.948 13 C -0.107 4.107 14 C 0.056 3.944 15 N -0.505 5.505 16 C 0.024 3.976 17 C -0.222 4.222 18 C -0.172 4.172 19 C 0.061 3.939 20 C -0.104 4.104 21 C 0.000 4.000 22 H 0.262 0.738 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -14.456 9.017 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.113 4.113 11 N -0.208 5.208 12 C -0.057 4.057 13 C -0.145 4.145 14 C -0.072 4.072 15 N -0.228 5.228 16 C -0.086 4.086 17 C -0.261 4.261 18 C -0.210 4.210 19 C -0.067 4.067 20 C -0.142 4.142 21 C -0.129 4.129 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.570 -15.088 8.553 17.935 hybrid contribution 1.759 1.925 0.928 2.768 sum 6.329 -13.162 9.481 17.412 Atomic orbital electron populations 1.69952 1.05948 1.26790 1.49695 1.25000 0.94809 0.99053 0.94725 0.86701 0.79669 0.83238 0.78635 1.20166 1.21231 1.20327 1.21065 0.92699 0.90487 1.51492 0.92628 1.20305 0.93747 0.91013 0.92983 1.24035 0.99858 0.86469 1.00971 1.68563 1.25969 1.16968 1.09333 1.22141 0.94827 0.95333 0.93416 1.21597 0.99561 0.96867 0.96509 1.22195 0.92942 0.98618 0.93431 1.61797 1.26763 1.20707 1.13488 1.22639 0.92174 0.98125 0.95640 1.23557 0.95510 1.03849 1.03230 1.23042 1.03788 0.91849 1.02331 1.22113 0.97019 0.90610 0.96995 1.21519 0.98161 0.99577 0.94973 1.23998 0.95262 0.97885 0.95719 0.92845 0.92393 0.93063 0.91490 0.94559 0.90569 0.91580 0.94705 0.90873 0.86648 0.88270 0.89038 0.88669 0.88571 0.94941 0.90762 0.91431 0.90510 0.91815 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.23 8.77 -34.44 -0.30 -14.53 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.04 0.97 3.60 -90.84 -0.33 0.65 16 10 C 0.02 0.35 6.98 -2.64 -0.02 0.34 16 11 N -0.49 -9.88 5.98 -230.01 -1.38 -11.26 16 12 C 0.05 0.90 1.60 -67.59 -0.11 0.79 16 13 C -0.11 -1.60 5.32 -26.65 -0.14 -1.74 16 14 C 0.06 0.72 4.09 -3.83 -0.02 0.70 16 15 N -0.51 -6.39 4.87 -226.69 -1.10 -7.49 16 16 C 0.02 0.25 6.12 -67.72 -0.41 -0.16 16 17 C -0.22 -2.11 9.51 -26.73 -0.25 -2.36 16 18 C -0.17 -1.59 9.97 -26.73 -0.27 -1.86 16 19 C 0.06 0.78 5.42 -3.83 -0.02 0.76 16 20 C -0.10 -1.60 5.48 -26.65 -0.15 -1.74 16 21 C 0.00 0.00 6.45 -2.76 -0.02 -0.02 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.05 1.21 7.66 -51.93 -0.40 0.81 16 25 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.98 7.43 -51.93 -0.39 0.60 16 29 H 0.03 0.45 7.35 -51.93 -0.38 0.07 16 30 H 0.07 0.85 6.49 -51.93 -0.34 0.52 16 31 H 0.12 1.09 7.99 -51.93 -0.41 0.68 16 32 H 0.10 0.99 5.91 -51.93 -0.31 0.69 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.94 7.55 -51.93 -0.39 0.55 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.07 1.06 7.80 -51.93 -0.41 0.66 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 1.09 7.80 -51.93 -0.41 0.69 16 LS Contribution 316.75 15.07 4.77 4.77 Total: -1.00 -28.05 316.75 -11.29 -39.34 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.17 Total: 0.83 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.13 Total: -17.43 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -1.74 Total: -43.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.05 -11.29 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256072972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.536 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds