Wall clock time and date at job start Sun Mar 29 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.52994 * 109.47315 * 240.00289 * 2 1 3 5 5 C 1.53003 * 109.46906 * 300.00299 * 4 2 1 6 6 C 1.53007 * 109.46970 * 299.99749 * 5 4 2 7 7 C 1.52997 * 109.46830 * 60.00120 * 6 5 4 8 8 H 1.08996 * 109.47426 * 60.00145 * 7 6 5 9 9 N 1.46901 * 109.46945 * 180.02562 * 7 6 5 10 10 C 1.46905 * 111.00373 * 176.04843 * 9 7 6 11 11 C 1.50700 * 109.47039 * 60.80010 * 10 9 7 12 12 H 1.07998 * 120.00085 * 4.26229 * 11 10 9 13 13 C 1.37879 * 120.00184 * 184.25068 * 11 10 9 14 14 N 1.31518 * 119.99705 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00198 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47273 * 90.00314 * 15 13 11 17 17 H 1.48503 * 109.47137 * 210.00211 * 15 13 11 18 18 H 1.48504 * 109.47318 * 330.00156 * 15 13 11 19 19 C 1.46910 * 110.99769 * 299.99583 * 9 7 6 20 20 C 1.52999 * 109.46772 * 167.30893 * 19 9 7 21 21 C 1.47205 * 109.46940 * 179.11957 * 20 19 9 22 22 N 8.31960 * 89.49843 * 154.05118 * 2 1 3 23 23 C 1.53001 * 109.47171 * 119.99934 * 2 1 3 24 24 H 1.08998 * 109.46709 * 299.99779 * 1 2 3 25 25 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46957 * 59.99654 * 1 2 3 27 27 H 1.08998 * 109.47228 * 59.99352 * 4 2 1 28 28 H 1.08996 * 109.47494 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47574 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.47778 * 59.99486 * 5 4 2 31 31 H 1.09005 * 109.47181 * 300.00119 * 6 5 4 32 32 H 1.08999 * 109.47383 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47371 * 180.80353 * 10 9 7 34 34 H 1.09000 * 109.46742 * 300.81080 * 10 9 7 35 35 H 0.97001 * 119.99746 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47085 * 287.30960 * 19 9 7 37 37 H 1.08995 * 109.46655 * 47.30897 * 19 9 7 38 38 H 1.09000 * 109.47165 * 299.10848 * 20 19 9 39 39 H 1.09000 * 109.47435 * 59.11513 * 20 19 9 40 40 H 1.08996 * 109.47106 * 179.97438 * 23 2 1 41 41 H 1.08998 * 109.47191 * 300.00197 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 1 0.4400 -2.1637 1.2492 9 7 2.0201 -2.8559 2.4486 10 6 1.6278 -2.1374 3.6684 11 6 0.1246 -2.0695 3.7499 12 1 -0.4796 -2.5741 3.0106 13 6 -0.4794 -1.3633 4.7685 14 7 0.2564 -0.7485 5.6687 15 14 -2.3427 -1.2797 4.8699 16 1 -2.8451 -2.4104 5.6911 17 1 -2.7473 0.0048 5.4959 18 1 -2.9173 -1.3669 3.5033 19 6 1.5495 -4.2472 2.4828 20 6 2.3209 -5.0202 3.5544 21 6 1.8346 -6.4088 3.6032 22 7 1.4572 -7.4806 3.6403 23 6 2.0401 -0.7212 1.2493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2490 29 1 1.8937 -2.6777 -2.1390 30 1 0.4400 -2.1637 -1.2492 31 1 3.1301 -2.8850 0.0000 32 1 1.6771 -3.9128 -0.0002 33 1 2.0156 -2.6636 4.5406 34 1 2.0362 -1.1272 3.6422 35 1 -0.1686 -0.2514 6.3851 36 1 0.4852 -4.2650 2.7173 37 1 1.7151 -4.7107 1.5103 38 1 3.3834 -5.0158 3.3114 39 1 2.1679 -4.5473 4.5245 40 1 3.1300 -0.7216 1.2490 41 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258826394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:12 Heat of formation + Delta-G solvation = 5.256050 kcal Electronic energy + Delta-G solvation = -19346.242265 eV Core-core repulsion = 16646.167359 eV Total energy + Delta-G solvation = -2700.074906 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23460 -36.78925 -35.64240 -32.66187 -31.39461 -31.13331 -28.53612 -26.67457 -26.04388 -23.64905 -22.18773 -21.47613 -19.59713 -18.22137 -17.21993 -16.24466 -15.64658 -14.93407 -14.54373 -14.35287 -14.19782 -13.66622 -13.38795 -13.23634 -12.94840 -12.52680 -12.33782 -12.23506 -11.87689 -11.75974 -11.50300 -11.35733 -11.05185 -10.93433 -10.81536 -10.60782 -10.55929 -10.37133 -10.20962 -10.06836 -9.87509 -9.77544 -9.49120 -9.18069 -8.44669 -7.23639 -6.07094 -4.15241 3.09296 3.14746 3.24406 3.32296 3.34624 4.33421 4.37460 4.95490 5.07089 5.11747 5.24376 5.38003 5.56485 5.59318 5.69111 5.73463 5.76677 5.86178 5.95013 6.00418 6.03365 6.13849 6.16489 6.31558 6.33697 6.38355 6.46284 6.58395 6.60204 6.62622 6.66718 6.79270 6.99897 7.08265 7.22067 7.50848 7.85238 7.91827 8.01740 8.21868 8.24236 8.94331 9.51790 10.97638 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.010245 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.721493 B = 2732.263456 C = 4342.996692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.097 3.903 8 H 0.052 0.948 9 N -0.537 5.537 10 C 0.179 3.821 11 C -0.546 4.546 12 H 0.056 0.944 13 C 0.069 3.931 14 N -0.889 5.889 15 Si 0.881 3.119 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.060 3.940 20 C -0.026 4.026 21 C 0.223 3.777 22 N -0.465 5.465 23 C -0.103 4.103 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.057 0.943 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 0.459 -10.540 11.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.011 4.011 8 H 0.070 0.930 9 N -0.261 5.261 10 C 0.054 3.946 11 C -0.585 4.585 12 H 0.074 0.926 13 C -0.134 4.134 14 N -0.527 5.527 15 Si 0.709 3.291 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.070 4.070 20 C -0.066 4.066 21 C -0.094 4.094 22 N -0.143 5.143 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.321 -1.033 -10.329 11.244 hybrid contribution -1.938 0.574 0.300 2.043 sum 2.384 -0.458 -10.029 10.318 Atomic orbital electron populations 1.21908 0.95539 1.02195 1.00885 1.21078 0.95887 0.98651 0.95142 0.91936 1.21551 1.00210 0.95705 0.97423 1.21546 1.00860 0.95688 0.97552 1.21718 1.01041 0.98478 0.94236 1.21359 0.98011 0.92999 0.88731 0.93032 1.62506 1.58632 1.00679 1.04273 1.19895 0.93909 0.94614 0.86165 1.21673 0.93081 1.32477 1.11249 0.92634 1.24890 0.97612 0.95261 0.95648 1.69925 1.35031 1.33261 1.14501 0.86768 0.86553 0.77499 0.78280 1.20739 1.21189 1.19949 1.21858 0.98109 0.90669 0.96360 1.19364 1.01152 0.82123 1.03960 1.29528 0.92617 0.95049 0.92216 1.81173 1.09938 1.13268 1.09911 1.21575 0.99928 0.95133 0.97476 0.92395 0.92074 0.93944 0.92918 0.92319 0.92836 0.92027 0.91770 0.92581 0.95182 0.93965 0.92837 0.93065 0.91802 0.87463 0.86586 0.92409 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.50 37.16 0.32 -1.87 16 2 C -0.09 -1.25 3.19 -90.62 -0.29 -1.54 16 3 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -1.36 5.45 -26.73 -0.15 -1.51 16 5 C -0.12 -1.48 5.65 -26.73 -0.15 -1.63 16 6 C -0.12 -1.64 5.01 -26.73 -0.13 -1.78 16 7 C 0.10 1.65 1.30 -67.71 -0.09 1.56 16 8 H 0.05 1.00 5.02 -51.93 -0.26 0.74 16 9 N -0.54 -9.74 4.56 -228.08 -1.04 -10.78 16 10 C 0.18 4.00 4.50 -4.97 -0.02 3.97 16 11 C -0.55 -13.50 7.52 -34.44 -0.26 -13.76 16 12 H 0.06 1.39 5.88 -52.49 -0.31 1.08 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 15 Si 0.88 20.60 29.54 -169.99 -5.02 15.58 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.06 0.99 4.59 -3.82 -0.02 0.97 16 20 C -0.03 -0.37 5.71 -29.52 -0.17 -0.54 16 21 C 0.22 3.57 15.44 -20.73 -0.32 3.25 16 22 N -0.47 -8.44 18.54 42.19 0.78 -7.65 16 23 C -0.10 -1.72 4.37 -26.73 -0.12 -1.84 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.94 4.81 -51.93 -0.25 0.69 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.77 6.15 -51.93 -0.32 0.45 16 33 H 0.03 0.70 6.42 -51.93 -0.33 0.37 16 34 H 0.04 1.03 6.19 -51.93 -0.32 0.71 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.05 0.98 6.37 -51.93 -0.33 0.65 16 37 H 0.06 0.95 5.73 -51.93 -0.30 0.65 16 38 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.12 1.83 6.54 -51.93 -0.34 1.49 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 1.59 6.33 -51.93 -0.33 1.26 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -26.98 311.39 -7.71 -34.68 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.36 Total: 0.19 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.49 Total: -13.01 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.48 Total: -42.13 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.98 -7.71 -34.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258826394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.940 kcal (2) G-P(sol) polarization free energy of solvation -26.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds