Wall clock time and date at job start Sun Mar 29 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.52994 * 109.47315 * 240.00289 * 2 1 3 5 5 C 1.53003 * 109.46906 * 300.00299 * 4 2 1 6 6 C 1.53007 * 109.46970 * 299.99749 * 5 4 2 7 7 C 1.52997 * 109.46830 * 60.00120 * 6 5 4 8 8 H 1.08996 * 109.47426 * 60.00145 * 7 6 5 9 9 N 1.46901 * 109.46945 * 180.02562 * 7 6 5 10 10 C 1.46905 * 111.00373 * 176.04843 * 9 7 6 11 11 C 1.50700 * 109.47039 * 60.80010 * 10 9 7 12 12 H 1.07998 * 120.00085 * 4.26229 * 11 10 9 13 13 C 1.37879 * 120.00184 * 184.25068 * 11 10 9 14 14 N 1.31518 * 119.99705 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00198 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47273 * 90.00314 * 15 13 11 17 17 H 1.48503 * 109.47137 * 210.00211 * 15 13 11 18 18 H 1.48504 * 109.47318 * 330.00156 * 15 13 11 19 19 C 1.46910 * 110.99769 * 299.99583 * 9 7 6 20 20 C 1.52999 * 109.46772 * 167.30893 * 19 9 7 21 21 C 1.47205 * 109.46940 * 179.11957 * 20 19 9 22 22 N 8.31960 * 89.49843 * 154.05118 * 2 1 3 23 23 C 1.53001 * 109.47171 * 119.99934 * 2 1 3 24 24 H 1.08998 * 109.46709 * 299.99779 * 1 2 3 25 25 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46957 * 59.99654 * 1 2 3 27 27 H 1.08998 * 109.47228 * 59.99352 * 4 2 1 28 28 H 1.08996 * 109.47494 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47574 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.47778 * 59.99486 * 5 4 2 31 31 H 1.09005 * 109.47181 * 300.00119 * 6 5 4 32 32 H 1.08999 * 109.47383 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47371 * 180.80353 * 10 9 7 34 34 H 1.09000 * 109.46742 * 300.81080 * 10 9 7 35 35 H 0.97001 * 119.99746 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47085 * 287.30960 * 19 9 7 37 37 H 1.08995 * 109.46655 * 47.30897 * 19 9 7 38 38 H 1.09000 * 109.47165 * 299.10848 * 20 19 9 39 39 H 1.09000 * 109.47435 * 59.11513 * 20 19 9 40 40 H 1.08996 * 109.47106 * 179.97438 * 23 2 1 41 41 H 1.08998 * 109.47191 * 300.00197 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1637 1.2492 8 1 0.4400 -2.1637 1.2492 9 7 2.0201 -2.8559 2.4486 10 6 1.6278 -2.1374 3.6684 11 6 0.1246 -2.0695 3.7499 12 1 -0.4796 -2.5741 3.0106 13 6 -0.4794 -1.3633 4.7685 14 7 0.2564 -0.7485 5.6687 15 14 -2.3427 -1.2797 4.8699 16 1 -2.8451 -2.4104 5.6911 17 1 -2.7473 0.0048 5.4959 18 1 -2.9173 -1.3669 3.5033 19 6 1.5495 -4.2472 2.4828 20 6 2.3209 -5.0202 3.5544 21 6 1.8346 -6.4088 3.6032 22 7 1.4572 -7.4806 3.6403 23 6 2.0401 -0.7212 1.2493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2490 29 1 1.8937 -2.6777 -2.1390 30 1 0.4400 -2.1637 -1.2492 31 1 3.1301 -2.8850 0.0000 32 1 1.6771 -3.9128 -0.0002 33 1 2.0156 -2.6636 4.5406 34 1 2.0362 -1.1272 3.6422 35 1 -0.1686 -0.2514 6.3851 36 1 0.4852 -4.2650 2.7173 37 1 1.7151 -4.7107 1.5103 38 1 3.3834 -5.0158 3.3114 39 1 2.1679 -4.5473 4.5245 40 1 3.1300 -0.7216 1.2490 41 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258826394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:12 Heat of formation + Delta-G solvation = -9.359546 kcal Electronic energy + Delta-G solvation = -19346.876045 eV Core-core repulsion = 16646.167359 eV Total energy + Delta-G solvation = -2700.708686 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54086 -38.12604 -37.05954 -34.58049 -32.59392 -32.45145 -30.01912 -28.13960 -27.46423 -25.29654 -23.54672 -22.67588 -21.08763 -19.50896 -18.57002 -18.06289 -17.02412 -16.56096 -16.04872 -15.70114 -15.41487 -15.08537 -14.64448 -14.58406 -14.28406 -14.24564 -13.68819 -13.45902 -13.26004 -13.13584 -13.06638 -12.93646 -12.60170 -12.50496 -12.13033 -11.96305 -11.85932 -11.83150 -11.72603 -11.68558 -11.39727 -11.11825 -10.75938 -10.51469 -10.44611 -8.88824 -8.06804 -6.21823 1.34794 1.38666 1.45055 1.77336 1.84331 2.40600 3.00143 3.19359 3.62953 3.93545 3.99964 4.20289 4.30016 4.39502 4.46890 4.55876 4.60117 4.66575 4.76387 4.79440 4.85938 4.96476 5.05574 5.11763 5.15915 5.21521 5.23601 5.31522 5.38716 5.43871 5.44812 5.49773 5.55328 5.62036 5.66887 5.79807 5.90934 6.20293 6.38433 6.63210 6.67322 7.00021 7.47763 8.93961 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.010245 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.721493 B = 2732.263456 C = 4342.996692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.109 4.109 7 C 0.097 3.903 8 H 0.024 0.976 9 N -0.528 5.528 10 C 0.194 3.806 11 C -0.538 4.538 12 H 0.050 0.950 13 C 0.021 3.979 14 N -0.920 5.920 15 Si 0.932 3.068 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.061 3.939 20 C -0.015 4.015 21 C 0.245 3.755 22 N -0.500 5.500 23 C -0.099 4.099 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.022 0.978 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -0.008 -12.726 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.147 4.147 7 C -0.011 4.011 8 H 0.042 0.958 9 N -0.251 5.251 10 C 0.067 3.933 11 C -0.577 4.577 12 H 0.068 0.932 13 C -0.178 4.178 14 N -0.561 5.561 15 Si 0.759 3.241 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.069 4.069 20 C -0.055 4.055 21 C -0.072 4.072 22 N -0.178 5.178 23 C -0.137 4.137 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.107 0.893 38 H 0.159 0.841 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.974 -1.509 -12.531 13.566 hybrid contribution -2.129 0.733 0.955 2.446 sum 2.845 -0.776 -11.576 11.946 Atomic orbital electron populations 1.21876 0.96190 1.01490 1.00697 1.21078 0.95290 0.99150 0.95059 0.91158 1.21518 1.00809 0.95315 0.96631 1.21553 1.00520 0.95903 0.97484 1.21659 1.01492 0.98438 0.93128 1.21421 0.96457 0.93637 0.89631 0.95809 1.62484 1.58223 1.01216 1.03213 1.19565 0.92216 0.93744 0.87769 1.21921 0.94485 1.31071 1.10253 0.93201 1.25520 1.00941 0.95543 0.95831 1.70019 1.36299 1.34506 1.15257 0.85961 0.82716 0.77290 0.78171 1.20696 1.21102 1.19616 1.21893 0.96655 0.89976 0.98334 1.19338 1.02708 0.80760 1.02685 1.29618 0.91541 0.94868 0.91133 1.81199 1.11148 1.14467 1.11029 1.21491 1.00064 0.94928 0.97174 0.95084 0.93035 0.91565 0.90948 0.91275 0.90363 0.92685 0.90827 0.92078 0.96236 0.96355 0.92999 0.95919 0.89297 0.84082 0.87732 0.91874 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.50 71.98 0.61 -3.59 16 2 C -0.09 -2.34 3.19 -10.79 -0.03 -2.37 16 3 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.11 -2.22 5.45 30.59 0.17 -2.05 16 5 C -0.12 -2.52 5.65 30.60 0.17 -2.35 16 6 C -0.11 -2.78 5.01 30.60 0.15 -2.63 16 7 C 0.10 3.23 1.30 44.92 0.06 3.29 16 8 H 0.02 0.94 5.02 -2.39 -0.01 0.93 16 9 N -0.53 -18.92 4.56 -875.51 -3.99 -22.92 16 10 C 0.19 8.83 4.50 85.56 0.39 9.22 16 11 C -0.54 -27.29 7.52 25.60 0.19 -27.09 16 12 H 0.05 2.55 5.88 -2.91 -0.02 2.54 16 13 C 0.02 1.13 5.46 84.65 0.46 1.59 16 14 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 15 Si 0.93 42.99 29.54 68.60 2.03 45.02 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.06 1.95 4.59 86.30 0.40 2.35 16 20 C -0.01 -0.41 5.71 28.79 0.16 -0.24 16 21 C 0.24 7.49 15.44 89.43 1.38 8.87 16 22 N -0.50 -17.62 18.54 20.02 0.37 -17.25 16 23 C -0.10 -3.29 4.37 30.60 0.13 -3.15 16 24 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 1.57 4.81 -2.39 -0.01 1.56 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.28 6.43 -2.39 -0.02 1.26 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.06 1.50 6.15 -2.39 -0.01 1.48 16 33 H 0.02 0.94 6.42 -2.39 -0.02 0.92 16 34 H 0.02 0.93 6.19 -2.39 -0.01 0.92 16 35 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.02 0.86 6.37 -2.39 -0.02 0.84 16 37 H 0.09 2.42 5.73 -2.39 -0.01 2.41 16 38 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.10 3.23 6.54 -2.39 -0.02 3.21 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 1.56 6.33 -2.39 -0.02 1.55 16 Total: -1.00 -59.01 311.39 3.95 -55.06 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.02 Total: 9.93 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.24 Total: -18.18 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -3.34 Total: -91.83 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -59.01 3.95 -55.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258826394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.704 kcal (2) G-P(sol) polarization free energy of solvation -59.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds