Wall clock time and date at job start Sun Mar 29 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47257 * 240.00387 * 3 2 1 5 5 H 1.48500 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46968 * 120.00395 * 3 2 1 7 7 C 1.37878 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.47727 * 110.99948 * 189.99835 * 10 9 7 12 12 C 1.52273 * 87.63398 * 222.23512 * 11 10 9 13 13 C 1.47729 * 110.99962 * 93.61309 * 10 9 7 14 14 C 1.52696 * 122.13846 * 260.09771 * 12 11 10 15 15 N 1.48217 * 85.72030 * 209.88215 * 14 12 11 16 16 C 1.46896 * 110.99997 * 136.73880 * 15 14 12 17 17 C 1.54264 * 110.03243 * 193.18736 * 16 15 14 18 18 C 1.54971 * 104.16138 * 217.13805 * 17 16 15 19 19 C 1.54890 * 102.77596 * 37.88657 * 18 17 16 20 20 C 1.53880 * 110.03234 * 75.97374 * 16 15 14 21 21 C 1.48218 * 91.07429 * 23.71342 * 15 14 12 22 22 H 0.97002 * 120.00290 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47257 * 60.00223 * 9 7 2 24 24 H 1.09003 * 109.47231 * 300.00470 * 9 7 2 25 25 H 1.09002 * 113.53837 * 336.94162 * 11 10 9 26 26 H 1.08998 * 113.53459 * 107.52909 * 11 10 9 27 27 H 1.08996 * 113.53774 * 252.40218 * 13 10 9 28 28 H 1.09001 * 113.53789 * 22.99025 * 13 10 9 29 29 H 1.08996 * 113.83101 * 324.07827 * 14 12 11 30 30 H 1.09001 * 113.83311 * 95.68073 * 14 12 11 31 31 H 1.08994 * 110.01982 * 314.57693 * 16 15 14 32 32 H 1.09004 * 110.48498 * 335.78491 * 17 16 15 33 33 H 1.08999 * 110.48789 * 98.42371 * 17 16 15 34 34 H 1.08996 * 110.71723 * 279.57251 * 18 17 16 35 35 H 1.08999 * 110.92160 * 156.29730 * 18 17 16 36 36 H 1.08998 * 110.48624 * 203.40078 * 19 18 17 37 37 H 1.09005 * 110.59565 * 80.81739 * 19 18 17 38 38 H 1.09004 * 110.02787 * 238.57177 * 20 16 15 39 39 H 1.08996 * 110.03173 * 359.94660 * 20 16 15 40 40 H 1.08993 * 113.83440 * 222.08938 * 21 15 14 41 41 H 1.09004 * 113.94307 * 90.49720 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5173 -4.9007 -0.2400 12 6 2.3972 -5.5024 0.8474 13 6 2.4836 -4.0746 1.3759 14 6 3.6417 -6.3253 0.5225 15 7 3.3621 -7.0429 1.7889 16 6 3.5338 -8.4922 1.6218 17 6 2.9291 -9.2387 2.8287 18 6 3.8993 -10.4235 3.0667 19 6 5.2852 -9.7941 2.7800 20 6 5.0312 -8.8454 1.5905 21 6 1.9303 -6.6661 1.7188 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 0.4583 -4.8819 0.0177 26 1 1.7036 -5.3163 -1.2302 27 1 3.4765 -3.8020 1.7334 28 1 1.6955 -3.8236 2.0859 29 1 3.5391 -6.9463 -0.3674 30 1 4.5669 -5.7493 0.5377 31 1 3.0532 -8.8211 0.7004 32 1 2.8992 -8.5887 3.7033 33 1 1.9304 -9.6044 2.5898 34 1 3.6928 -11.2366 2.3708 35 1 3.8399 -10.7743 4.0969 36 1 6.0051 -10.5653 2.5060 37 1 5.6385 -9.2341 3.6459 38 1 5.2771 -9.3464 0.6541 39 1 5.6304 -7.9413 1.6984 40 1 1.5085 -6.3583 2.6755 41 1 1.3079 -7.3891 1.1915 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:55 Heat of formation + Delta-G solvation = 63.210596 kcal Electronic energy + Delta-G solvation = -18465.686310 eV Core-core repulsion = 15768.124502 eV Total energy + Delta-G solvation = -2697.561808 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88130 -38.38030 -36.10234 -32.78842 -29.97164 -28.98026 -27.92404 -25.95835 -25.39823 -25.02186 -22.84832 -20.77269 -20.43258 -19.64142 -17.83439 -16.45471 -16.26819 -15.78750 -15.27438 -14.78270 -14.48609 -14.36650 -13.62328 -13.50413 -13.28922 -13.08103 -12.52816 -12.12798 -11.90952 -11.74735 -11.26432 -11.23769 -11.09791 -11.01489 -10.88395 -10.79699 -10.69923 -10.51954 -10.36257 -10.14311 -9.93985 -9.51661 -9.19813 -8.64117 -8.40043 -7.78506 -6.00748 -4.01771 3.36105 3.39209 3.43098 3.91030 4.35364 4.44536 4.49368 4.61794 4.70737 4.77503 5.17753 5.21437 5.24297 5.27880 5.34618 5.35536 5.47667 5.53161 5.60100 5.64337 5.73366 5.79770 5.87841 5.91227 5.96221 6.01884 6.08888 6.13005 6.18568 6.19054 6.31967 6.42066 6.45911 6.55621 6.71351 7.19911 7.24486 7.69615 7.90607 8.15753 8.50469 9.05687 9.62210 11.10348 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.053807 B = 0.003827 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.253813 B = 7314.913991 C = 7513.691457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.159 3.841 10 N -0.465 5.465 11 C 0.008 3.992 12 C -0.121 4.121 13 C 0.043 3.957 14 C 0.039 3.961 15 N -0.470 5.470 16 C 0.045 3.955 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.116 4.116 21 C 0.017 3.983 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.002 0.998 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 -19.822 4.516 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.033 3.967 10 N -0.188 5.188 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.086 4.086 14 C -0.089 4.089 15 N -0.193 5.193 16 C -0.064 4.064 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.112 4.112 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.020 0.980 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.783 -19.295 4.644 20.973 hybrid contribution -0.912 0.509 -0.295 1.085 sum 5.871 -18.786 4.349 20.156 Atomic orbital electron populations 1.69946 1.06081 1.26875 1.51236 1.25007 0.94887 0.99377 0.95473 0.86534 0.79417 0.82616 0.78700 1.20158 1.21378 1.20228 1.21080 0.93571 0.89808 1.49766 0.91922 1.20257 0.90711 0.89239 0.96504 1.68990 1.33363 1.01440 1.15006 1.23537 0.96763 0.93850 0.98087 1.22979 0.96819 0.94641 0.97765 1.23324 1.02000 0.89920 0.93341 1.23484 0.98751 0.95265 0.91439 1.68730 1.13158 1.06287 1.31116 1.22863 0.96276 0.89950 0.97286 1.22397 0.97995 0.96571 0.98456 1.22469 0.95165 0.97383 1.01119 1.22303 0.96875 0.98172 0.98465 1.22123 0.95460 0.99739 0.98053 1.23689 0.90893 0.96392 1.00271 0.92898 0.95469 0.97983 0.91965 0.90943 0.90441 0.91640 0.91410 0.89000 0.93641 0.90489 0.92101 0.91817 0.91653 0.92047 0.91468 0.92214 0.90701 0.89477 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.50 -14.64 9.39 -34.44 -0.32 -14.97 16 8 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.16 4.24 4.57 -4.98 -0.02 4.21 16 10 N -0.47 -10.33 6.31 -245.54 -1.55 -11.88 16 11 C 0.01 0.13 7.50 -6.67 -0.05 0.08 16 12 C -0.12 -1.89 1.46 -155.68 -0.23 -2.12 16 13 C 0.04 0.83 7.55 -6.56 -0.05 0.78 16 14 C 0.04 0.54 7.42 -3.25 -0.02 0.51 16 15 N -0.47 -6.10 5.81 -235.90 -1.37 -7.47 16 16 C 0.05 0.50 2.23 -66.60 -0.15 0.35 16 17 C -0.12 -1.13 5.91 -25.03 -0.15 -1.28 16 18 C -0.12 -1.02 6.91 -24.69 -0.17 -1.19 16 19 C -0.12 -1.05 6.83 -25.08 -0.17 -1.22 16 20 C -0.12 -1.16 6.30 -25.61 -0.16 -1.32 16 21 C 0.02 0.22 7.24 -3.25 -0.02 0.19 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 24 H 0.00 0.07 7.31 -51.93 -0.38 -0.31 16 25 H 0.06 1.12 7.91 -51.93 -0.41 0.71 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.07 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.83 7.81 -51.93 -0.41 0.43 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -30.05 322.54 -11.37 -41.42 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.41 Total: -3.03 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.62 Total: -14.50 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -2.18 Total: -45.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.05 -11.37 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.633 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds