Wall clock time and date at job start Sun Mar 29 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47257 * 240.00387 * 3 2 1 5 5 H 1.48500 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46968 * 120.00395 * 3 2 1 7 7 C 1.37878 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.47727 * 110.99948 * 189.99835 * 10 9 7 12 12 C 1.52273 * 87.63398 * 222.23512 * 11 10 9 13 13 C 1.47729 * 110.99962 * 93.61309 * 10 9 7 14 14 C 1.52696 * 122.13846 * 260.09771 * 12 11 10 15 15 N 1.48217 * 85.72030 * 209.88215 * 14 12 11 16 16 C 1.46896 * 110.99997 * 136.73880 * 15 14 12 17 17 C 1.54264 * 110.03243 * 193.18736 * 16 15 14 18 18 C 1.54971 * 104.16138 * 217.13805 * 17 16 15 19 19 C 1.54890 * 102.77596 * 37.88657 * 18 17 16 20 20 C 1.53880 * 110.03234 * 75.97374 * 16 15 14 21 21 C 1.48218 * 91.07429 * 23.71342 * 15 14 12 22 22 H 0.97002 * 120.00290 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47257 * 60.00223 * 9 7 2 24 24 H 1.09003 * 109.47231 * 300.00470 * 9 7 2 25 25 H 1.09002 * 113.53837 * 336.94162 * 11 10 9 26 26 H 1.08998 * 113.53459 * 107.52909 * 11 10 9 27 27 H 1.08996 * 113.53774 * 252.40218 * 13 10 9 28 28 H 1.09001 * 113.53789 * 22.99025 * 13 10 9 29 29 H 1.08996 * 113.83101 * 324.07827 * 14 12 11 30 30 H 1.09001 * 113.83311 * 95.68073 * 14 12 11 31 31 H 1.08994 * 110.01982 * 314.57693 * 16 15 14 32 32 H 1.09004 * 110.48498 * 335.78491 * 17 16 15 33 33 H 1.08999 * 110.48789 * 98.42371 * 17 16 15 34 34 H 1.08996 * 110.71723 * 279.57251 * 18 17 16 35 35 H 1.08999 * 110.92160 * 156.29730 * 18 17 16 36 36 H 1.08998 * 110.48624 * 203.40078 * 19 18 17 37 37 H 1.09005 * 110.59565 * 80.81739 * 19 18 17 38 38 H 1.09004 * 110.02787 * 238.57177 * 20 16 15 39 39 H 1.08996 * 110.03173 * 359.94660 * 20 16 15 40 40 H 1.08993 * 113.83440 * 222.08938 * 21 15 14 41 41 H 1.09004 * 113.94307 * 90.49720 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5173 -4.9007 -0.2400 12 6 2.3972 -5.5024 0.8474 13 6 2.4836 -4.0746 1.3759 14 6 3.6417 -6.3253 0.5225 15 7 3.3621 -7.0429 1.7889 16 6 3.5338 -8.4922 1.6218 17 6 2.9291 -9.2387 2.8287 18 6 3.8993 -10.4235 3.0667 19 6 5.2852 -9.7941 2.7800 20 6 5.0312 -8.8454 1.5905 21 6 1.9303 -6.6661 1.7188 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 0.4583 -4.8819 0.0177 26 1 1.7036 -5.3163 -1.2302 27 1 3.4765 -3.8020 1.7334 28 1 1.6955 -3.8236 2.0859 29 1 3.5391 -6.9463 -0.3674 30 1 4.5669 -5.7493 0.5377 31 1 3.0532 -8.8211 0.7004 32 1 2.8992 -8.5887 3.7033 33 1 1.9304 -9.6044 2.5898 34 1 3.6928 -11.2366 2.3708 35 1 3.8399 -10.7743 4.0969 36 1 6.0051 -10.5653 2.5060 37 1 5.6385 -9.2341 3.6459 38 1 5.2771 -9.3464 0.6541 39 1 5.6304 -7.9413 1.6984 40 1 1.5085 -6.3583 2.6755 41 1 1.3079 -7.3891 1.1915 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:54 Heat of formation + Delta-G solvation = 42.022641 kcal Electronic energy + Delta-G solvation = -18466.605089 eV Core-core repulsion = 15768.124502 eV Total energy + Delta-G solvation = -2698.480587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.15270 -39.51821 -37.21548 -34.94740 -31.45397 -29.73281 -29.37360 -27.03084 -26.94999 -26.64827 -24.36323 -22.20377 -21.41185 -20.51825 -19.15471 -18.52929 -17.33230 -16.88476 -16.75849 -16.16902 -16.13116 -15.54889 -14.95200 -14.72270 -14.50236 -14.21858 -14.06301 -13.67821 -13.39657 -13.13226 -12.87702 -12.53469 -12.38695 -12.12695 -11.97890 -11.95682 -11.90343 -11.67077 -11.56911 -11.40579 -11.38011 -11.27233 -10.95395 -10.62053 -9.69747 -9.56064 -8.23772 -6.34465 1.38867 1.42605 1.50782 2.38671 2.82682 3.08037 3.17025 3.43048 3.62235 3.77317 3.78485 3.88662 4.16913 4.34923 4.45626 4.51334 4.51929 4.57877 4.61600 4.63841 4.67978 4.74048 4.80700 4.82800 4.85463 4.95503 5.00350 5.02257 5.09374 5.11417 5.14779 5.19300 5.24281 5.34269 5.51276 5.53695 5.57706 5.77931 6.08927 6.23894 6.47555 6.79775 7.35194 8.87188 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.053807 B = 0.003827 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.253813 B = 7314.913991 C = 7513.691457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.175 3.825 10 N -0.485 5.485 11 C 0.008 3.992 12 C -0.108 4.108 13 C 0.040 3.960 14 C 0.045 3.955 15 N -0.478 5.478 16 C 0.043 3.957 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.116 4.116 21 C 0.027 3.973 22 H 0.266 0.734 23 H 0.000 1.000 24 H -0.021 1.021 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -21.217 4.619 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.048 3.952 10 N -0.208 5.208 11 C -0.121 4.121 12 C -0.109 4.109 13 C -0.090 4.090 14 C -0.083 4.083 15 N -0.201 5.201 16 C -0.066 4.066 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.101 4.101 22 H 0.075 0.925 23 H 0.018 0.982 24 H -0.004 1.004 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.763 -20.714 4.751 22.625 hybrid contribution -1.219 0.891 -0.323 1.544 sum 6.544 -19.823 4.428 21.339 Atomic orbital electron populations 1.70065 1.07691 1.28098 1.51613 1.25946 0.95827 1.03292 0.94609 0.85409 0.78190 0.77725 0.79143 1.19301 1.20456 1.19280 1.21407 0.93523 0.91346 1.50391 0.92474 1.19917 0.90687 0.90640 0.93964 1.68905 1.32793 1.01920 1.17136 1.23590 0.96881 0.91818 0.99860 1.22840 0.97776 0.93613 0.96653 1.23287 1.01176 0.92705 0.91791 1.23479 0.97174 0.95005 0.92640 1.68732 1.12805 1.07962 1.30609 1.22962 0.97114 0.88467 0.98068 1.22391 0.98814 0.96806 0.97348 1.22464 0.94207 0.96996 1.01985 1.22304 0.97577 0.98200 0.97639 1.22129 0.94556 0.99514 0.99186 1.23674 0.91489 0.95193 0.99786 0.92543 0.98192 1.00361 0.92240 0.89524 0.90924 0.92781 0.89660 0.89845 0.93093 0.91770 0.91290 0.90741 0.90820 0.90681 0.92189 0.91191 0.92195 0.89477 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -31.48 9.39 25.60 0.24 -31.24 16 8 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.18 9.70 4.57 85.56 0.39 10.09 16 10 N -0.49 -22.03 6.31 -930.74 -5.87 -27.90 16 11 C 0.01 0.29 7.50 84.00 0.63 0.92 16 12 C -0.11 -3.28 1.46 -52.71 -0.08 -3.36 16 13 C 0.04 1.55 7.55 84.07 0.64 2.19 16 14 C 0.05 1.18 7.42 85.95 0.64 1.82 16 15 N -0.48 -11.58 5.81 -900.25 -5.23 -16.81 16 16 C 0.04 0.83 2.23 45.64 0.10 0.93 16 17 C -0.12 -1.98 5.91 31.70 0.19 -1.79 16 18 C -0.12 -1.64 6.91 31.91 0.22 -1.42 16 19 C -0.12 -1.80 6.83 31.67 0.22 -1.59 16 20 C -0.12 -2.07 6.30 31.32 0.20 -1.87 16 21 C 0.03 0.67 7.24 85.95 0.62 1.30 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.00 0.00 8.08 -2.39 -0.02 -0.02 16 24 H -0.02 -1.25 7.31 -2.39 -0.02 -1.27 16 25 H 0.06 2.16 7.91 -2.39 -0.02 2.14 16 26 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.05 2.23 7.42 -2.39 -0.02 2.21 16 29 H 0.09 1.95 7.73 -2.39 -0.02 1.93 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 0.96 7.75 -2.39 -0.02 0.94 16 32 H 0.06 1.27 8.05 -2.38 -0.02 1.25 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.06 1.25 7.81 -2.39 -0.02 1.23 16 40 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 1.84 7.88 -2.38 -0.02 1.82 16 Total: -1.00 -65.19 322.54 -3.36 -68.55 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.97 Total: 9.26 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 4.46 Total: -23.49 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -10.82 Total: -101.86 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.19 -3.36 -68.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.576 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds