Wall clock time and date at job start Sun Mar 29 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99719 * 2 1 4 4 H 1.48494 * 109.47311 * 240.00170 * 3 2 1 5 5 H 1.48504 * 109.47136 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46725 * 120.00353 * 3 2 1 7 7 C 1.37874 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99685 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00291 * 0.27414 * 7 2 1 10 10 N 1.46893 * 109.47211 * 179.72655 * 9 7 2 11 11 C 1.47667 * 110.99824 * 266.27960 * 10 9 7 12 12 C 1.52548 * 87.65365 * 222.05212 * 11 10 9 13 13 C 1.52521 * 121.73104 * 149.60058 * 12 11 10 14 14 C 1.53700 * 83.22358 * 102.36107 * 13 12 11 15 15 N 1.46414 * 121.85756 * 260.92302 * 12 11 10 16 16 C 1.46898 * 110.99581 * 10.22824 * 15 12 11 17 17 C 1.54270 * 110.02896 * 188.34240 * 16 15 12 18 18 C 1.54968 * 104.15981 * 217.13536 * 17 16 15 19 19 C 1.54888 * 102.77805 * 37.89524 * 18 17 16 20 20 C 1.53876 * 110.03231 * 71.13031 * 16 15 12 21 21 C 1.47676 * 111.00051 * 169.99665 * 10 9 7 22 22 H 0.96999 * 119.99827 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46764 * 299.72676 * 9 7 2 24 24 H 1.08995 * 109.47049 * 59.71947 * 9 7 2 25 25 H 1.08996 * 113.52362 * 336.74651 * 11 10 9 26 26 H 1.09007 * 113.52325 * 107.36437 * 11 10 9 27 27 H 1.09006 * 114.22902 * 215.92009 * 13 12 11 28 28 H 1.09000 * 114.22525 * 348.80442 * 13 12 11 29 29 H 1.08997 * 113.42968 * 270.26030 * 14 13 12 30 30 H 1.09000 * 113.42239 * 139.94304 * 14 13 12 31 31 H 1.08994 * 110.02279 * 309.73890 * 16 15 12 32 32 H 1.09000 * 110.49181 * 335.78686 * 17 16 15 33 33 H 1.09001 * 110.48186 * 98.43066 * 17 16 15 34 34 H 1.08989 * 110.72246 * 279.57565 * 18 17 16 35 35 H 1.09010 * 110.91925 * 156.29777 * 18 17 16 36 36 H 1.08993 * 110.48628 * 203.40396 * 19 18 17 37 37 H 1.08999 * 110.60218 * 80.81027 * 19 18 17 38 38 H 1.08995 * 110.03363 * 238.56660 * 20 16 15 39 39 H 1.09003 * 110.03538 * 359.97438 * 20 16 15 40 40 H 1.08996 * 113.52281 * 252.64211 * 21 10 9 41 41 H 1.09002 * 113.51939 * 23.18634 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0074 10 7 2.2058 -3.6156 -0.0132 11 6 2.4817 -4.0687 -1.3913 12 6 2.4023 -5.5000 -0.8696 13 6 1.9232 -6.6494 -1.7503 14 6 3.4251 -6.9618 -1.8455 15 7 3.6036 -6.2740 -0.5508 16 6 4.7994 -5.4210 -0.5683 17 6 6.0688 -6.2879 -0.4378 18 6 7.0183 -5.4392 0.4451 19 6 6.0503 -4.7951 1.4683 20 6 4.7876 -4.4719 0.6428 21 6 1.5178 -4.9014 0.2196 22 1 -0.4850 0.8401 0.0004 23 1 0.6245 -2.5615 0.8824 24 1 0.6244 -2.5522 -0.8975 25 1 1.6904 -3.8188 -2.0980 26 1 3.4727 -3.7910 -1.7504 27 1 1.3417 -7.4052 -1.2223 28 1 1.4716 -6.3339 -2.6909 29 1 3.9208 -6.4585 -2.6756 30 1 3.6494 -8.0277 -1.8044 31 1 4.8337 -4.8455 -1.4933 32 1 5.8363 -7.2336 0.0519 33 1 6.5130 -6.4637 -1.4175 34 1 7.5169 -4.6741 -0.1497 35 1 7.7492 -6.0713 0.9498 36 1 6.4815 -3.8822 1.8790 37 1 5.8140 -5.4975 2.2676 38 1 4.8171 -3.4359 0.3056 39 1 3.8944 -4.6439 1.2434 40 1 1.7019 -5.3205 1.2088 41 1 0.4593 -4.8817 -0.0401 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:56 Heat of formation + Delta-G solvation = 72.414323 kcal Electronic energy + Delta-G solvation = -19481.539165 eV Core-core repulsion = 16784.376460 eV Total energy + Delta-G solvation = -2697.162705 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30747 -37.45817 -36.23767 -32.74699 -29.90647 -28.90478 -28.16010 -25.65140 -25.19967 -24.99230 -22.42472 -20.53456 -20.23687 -19.72611 -17.62666 -16.42823 -16.15560 -15.69225 -15.07534 -15.04113 -14.40510 -13.90869 -13.51939 -13.08896 -12.99825 -12.86517 -12.32920 -11.99618 -11.89350 -11.66254 -11.13646 -11.00766 -10.87955 -10.72987 -10.68730 -10.58245 -10.41652 -10.33885 -10.23141 -10.06188 -10.01288 -9.48565 -9.20746 -8.48111 -8.41099 -7.77350 -6.02794 -4.03770 3.33144 3.36964 3.40285 4.08437 4.42030 4.55321 4.68322 4.83613 4.92411 5.10805 5.17859 5.31586 5.34483 5.39228 5.56168 5.68376 5.71832 5.83099 5.86796 5.90902 5.96134 6.00530 6.03167 6.05392 6.09608 6.16833 6.21604 6.34208 6.38011 6.40312 6.48688 6.64712 6.73006 6.79363 7.08742 7.21879 7.47685 7.68414 7.87792 8.13342 8.48061 9.03364 9.60186 11.08232 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.006833 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.215696 B = 4096.811362 C = 4977.142649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.158 3.842 10 N -0.454 5.454 11 C 0.009 3.991 12 C 0.027 3.973 13 C -0.135 4.135 14 C -0.001 4.001 15 N -0.435 5.435 16 C 0.049 3.951 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.102 4.102 21 C 0.013 3.987 22 H 0.261 0.739 23 H 0.028 0.972 24 H 0.001 0.999 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.326 -13.427 -2.877 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.032 3.968 10 N -0.176 5.176 11 C -0.122 4.122 12 C -0.064 4.064 13 C -0.173 4.173 14 C -0.130 4.130 15 N -0.157 5.157 16 C -0.060 4.060 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.162 4.162 20 C -0.140 4.140 21 C -0.117 4.117 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.019 0.981 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.784 -13.393 -1.773 16.114 hybrid contribution -0.339 1.425 -1.291 1.953 sum 8.445 -11.967 -3.064 14.964 Atomic orbital electron populations 1.69948 1.06044 1.26845 1.51196 1.24995 0.94863 0.99302 0.95521 0.86571 0.79454 0.82811 0.78645 1.20340 1.21347 1.20161 1.21048 0.93453 0.89794 1.49761 0.92032 1.20260 0.90740 0.89257 0.96532 1.69081 1.33253 1.01602 1.13705 1.23884 1.02035 0.91683 0.94557 1.23274 0.93630 0.92790 0.96729 1.22989 0.96163 0.98369 0.99829 1.23676 0.96270 1.00464 0.92604 1.68827 1.01056 1.17434 1.28399 1.22810 0.90289 0.93798 0.99073 1.22370 0.94647 0.98980 0.99180 1.22461 0.97292 0.98721 0.97575 1.22384 0.96203 0.99881 0.97758 1.22109 0.98015 0.98511 0.95342 1.23612 0.96366 0.92890 0.98851 0.92905 0.95381 0.98069 0.91346 0.90559 0.88992 0.90753 0.91761 0.90172 0.93216 0.90987 0.92642 0.91913 0.92163 0.92185 0.92182 0.91047 0.89381 0.90322 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.26 9.39 -34.44 -0.32 -14.58 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.16 4.11 4.57 -4.98 -0.02 4.09 16 10 N -0.45 -9.67 4.05 -245.92 -1.00 -10.66 16 11 C 0.01 0.17 6.62 -6.88 -0.05 0.12 16 12 C 0.03 0.43 1.19 -139.74 -0.17 0.27 16 13 C -0.14 -1.72 8.26 -26.61 -0.22 -1.94 16 14 C 0.00 -0.02 7.42 -9.26 -0.07 -0.08 16 15 N -0.44 -6.42 6.02 -226.10 -1.36 -7.78 16 16 C 0.05 0.72 1.83 -66.59 -0.12 0.60 16 17 C -0.11 -1.42 6.21 -25.03 -0.16 -1.57 16 18 C -0.12 -1.48 6.91 -24.70 -0.17 -1.65 16 19 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 20 C -0.10 -1.69 4.63 -25.61 -0.12 -1.81 16 21 C 0.01 0.23 6.89 -6.87 -0.05 0.18 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.00 0.04 7.31 -51.93 -0.38 -0.34 16 25 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 26 H 0.08 1.42 5.97 -51.93 -0.31 1.11 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.78 5.90 -51.93 -0.31 0.47 16 32 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.74 8.14 -51.94 -0.42 0.32 16 35 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 39 H 0.09 1.65 5.99 -51.93 -0.31 1.34 16 40 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 41 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -29.22 312.03 -10.77 -39.99 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.10 Total: -0.14 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.73 Total: -16.82 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -1.62 Total: -44.64 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.22 -10.77 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.403 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds