Wall clock time and date at job start Sun Mar 29 2020 23:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.34841 * 125.04334 * 119.89906 * 3 2 1 5 5 C 1.39130 * 113.62726 * 180.19122 * 4 3 2 6 6 C 1.47162 * 122.97971 * 179.84511 * 5 4 3 7 7 O 1.21543 * 120.00271 * 359.72977 * 6 5 4 8 8 O 1.34785 * 120.00330 * 179.73928 * 6 5 4 9 9 C 1.45198 * 117.00225 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46884 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99923 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46794 * 89.99626 * 15 13 11 17 17 H 1.48502 * 109.47140 * 209.99610 * 15 13 11 18 18 H 1.48501 * 109.46982 * 329.99723 * 15 13 11 19 19 C 1.36653 * 114.04343 * 359.58184 * 5 4 3 20 20 S 1.70595 * 110.54359 * 0.22541 * 19 5 4 21 21 H 1.08002 * 123.18954 * 0.02562 * 4 3 2 22 22 H 1.09002 * 109.47379 * 59.99365 * 9 8 6 23 23 H 1.09001 * 109.46782 * 299.99448 * 9 8 6 24 24 H 1.09001 * 109.47194 * 299.99482 * 10 9 8 25 25 H 1.08992 * 109.47399 * 59.99654 * 10 9 8 26 26 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 27 27 H 1.08000 * 124.72887 * 180.23128 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3420 0.5513 -0.9570 5 6 4.7058 0.4109 -0.7204 6 6 5.7352 0.9320 -1.6341 7 8 5.4080 1.5112 -2.6513 8 8 7.0408 0.7667 -1.3430 9 6 8.0006 1.3069 -2.2891 10 6 9.4201 1.0251 -1.7925 11 6 10.4164 1.5852 -2.7748 12 1 10.0715 2.0918 -3.6641 13 6 11.7680 1.4518 -2.5376 14 7 12.6374 1.9401 -3.3951 15 14 12.3644 0.5761 -0.9991 16 1 12.5238 -0.8724 -1.2844 17 1 13.6708 1.1450 -0.5807 18 1 11.3727 0.7598 0.0909 19 6 5.0049 -0.2486 0.4384 20 16 3.5772 -0.7106 1.2499 21 1 2.9413 1.0514 -1.8264 22 1 7.8548 2.3832 -2.3802 23 1 7.8557 0.8370 -3.2619 24 1 9.5647 1.4953 -0.8198 25 1 9.5662 -0.0511 -1.7011 26 1 13.5883 1.8466 -3.2280 27 1 6.0056 -0.4494 0.7914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324653527.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:03 Heat of formation + Delta-G solvation = -30.362726 kcal Electronic energy + Delta-G solvation = -14606.193373 eV Core-core repulsion = 11842.108846 eV Total energy + Delta-G solvation = -2764.084527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.31226 -38.26588 -36.70914 -36.07998 -33.36927 -31.19738 -30.44456 -26.22032 -25.32720 -23.31154 -20.73952 -19.81916 -19.55971 -17.72295 -16.83870 -16.24630 -16.16134 -15.92445 -14.64471 -14.47172 -14.24358 -13.70969 -13.63482 -13.24416 -13.07054 -12.76551 -12.72912 -12.47300 -11.65902 -11.58384 -11.34751 -10.76538 -10.68585 -10.10295 -9.99457 -9.78205 -9.41803 -9.40131 -9.11357 -8.66807 -6.16994 -4.18644 -0.07929 0.64073 1.22253 1.23223 2.46611 2.77943 2.92207 3.10273 3.23724 3.31523 3.34196 3.55048 4.34017 4.59774 4.77607 4.94995 5.16378 5.25869 5.50241 5.68505 5.89063 5.90826 6.38165 6.64899 7.02945 7.09963 7.15194 7.57178 7.97696 8.35040 8.84718 9.42124 10.95526 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.047829 B = 0.003982 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.275056 B = 7029.387914 C = 7594.216054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.285 3.715 3 C -0.181 4.181 4 C -0.010 4.010 5 C -0.145 4.145 6 C 0.521 3.479 7 O -0.506 6.506 8 O -0.356 6.356 9 C 0.083 3.917 10 C -0.009 4.009 11 C -0.529 4.529 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.165 4.165 20 S 0.290 5.710 21 H 0.166 0.834 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 -6.402 11.288 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.031 4.031 3 C -0.301 4.301 4 C -0.044 4.044 5 C -0.159 4.159 6 C 0.363 3.637 7 O -0.395 6.395 8 O -0.272 6.272 9 C 0.011 3.989 10 C -0.046 4.046 11 C -0.567 4.567 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.708 3.292 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.305 4.305 20 S 0.557 5.443 21 H 0.184 0.816 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -18.301 -6.980 12.307 23.132 hybrid contribution 1.393 0.454 -0.836 1.687 sum -16.907 -6.526 11.471 21.448 Atomic orbital electron populations 1.81321 1.11044 1.08629 1.07047 1.24165 0.90751 0.93851 0.94354 1.19768 0.89670 1.16046 1.04604 1.20298 0.90513 0.95197 0.98344 1.18288 0.92484 1.07850 0.97310 1.20237 0.82851 0.76815 0.83833 1.90858 1.82895 1.39503 1.26292 1.86522 1.15243 1.73028 1.52426 1.23459 0.86778 0.98285 0.90368 1.19632 0.89001 0.97794 0.98217 1.20832 0.89944 1.38087 1.07825 0.90596 1.24940 0.96546 0.94940 0.96575 1.69892 1.02027 1.45449 1.35987 0.86749 0.78385 0.80124 0.83915 1.20061 1.21159 1.18788 1.26516 1.06003 0.99855 0.98094 1.83242 0.91803 1.50072 1.19198 0.81649 0.91415 0.91434 0.95339 0.95768 0.92392 0.78827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.81 18.54 41.84 0.78 -4.03 15 2 C 0.28 2.81 15.79 -22.47 -0.35 2.45 15 3 C -0.18 -1.51 6.24 -38.86 -0.24 -1.75 15 4 C -0.01 -0.09 9.71 -40.46 -0.39 -0.48 15 5 C -0.14 -1.61 5.82 -106.52 -0.62 -2.23 15 6 C 0.52 8.06 7.92 34.35 0.27 8.33 15 7 O -0.51 -9.19 16.48 -19.30 -0.32 -9.50 15 8 O -0.36 -6.09 9.84 -40.72 -0.40 -6.49 15 9 C 0.08 1.67 5.42 37.16 0.20 1.87 15 10 C -0.01 -0.21 4.42 -27.88 -0.12 -0.33 15 11 C -0.53 -14.56 9.66 -34.44 -0.33 -14.89 15 12 H 0.08 2.25 7.99 -52.49 -0.42 1.83 15 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 14 N -0.90 -26.75 13.96 55.43 0.77 -25.97 15 15 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 15 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 18 H -0.26 -5.87 6.54 56.52 0.37 -5.50 15 19 C -0.16 -1.35 10.58 30.16 0.32 -1.03 15 20 S 0.29 1.76 23.03 -107.50 -2.48 -0.72 15 21 H 0.17 1.54 7.99 -52.49 -0.42 1.12 15 22 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 23 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 24 H 0.03 0.64 7.20 -51.93 -0.37 0.27 15 25 H 0.02 0.54 7.57 -51.93 -0.39 0.14 15 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 27 H 0.19 1.36 8.00 -52.49 -0.42 0.94 15 LS Contribution 274.41 15.07 4.14 4.14 Total: -1.00 -31.52 274.41 -5.59 -37.11 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -2.04 Total: -4.41 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.37 Total: -6.11 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 1.55 Total: -30.00 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.72 Total: -16.00 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.48 Total: -0.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.52 -5.59 -37.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324653527.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.748 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds