Wall clock time and date at job start Sun Mar 29 2020 23:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.34841 * 125.04334 * 119.89906 * 3 2 1 5 5 C 1.39130 * 113.62726 * 180.19122 * 4 3 2 6 6 C 1.47162 * 122.97971 * 179.84511 * 5 4 3 7 7 O 1.21543 * 120.00271 * 359.72977 * 6 5 4 8 8 O 1.34785 * 120.00330 * 179.73928 * 6 5 4 9 9 C 1.45198 * 117.00225 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46884 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99923 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46794 * 89.99626 * 15 13 11 17 17 H 1.48502 * 109.47140 * 209.99610 * 15 13 11 18 18 H 1.48501 * 109.46982 * 329.99723 * 15 13 11 19 19 C 1.36653 * 114.04343 * 359.58184 * 5 4 3 20 20 S 1.70595 * 110.54359 * 0.22541 * 19 5 4 21 21 H 1.08002 * 123.18954 * 0.02562 * 4 3 2 22 22 H 1.09002 * 109.47379 * 59.99365 * 9 8 6 23 23 H 1.09001 * 109.46782 * 299.99448 * 9 8 6 24 24 H 1.09001 * 109.47194 * 299.99482 * 10 9 8 25 25 H 1.08992 * 109.47399 * 59.99654 * 10 9 8 26 26 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 27 27 H 1.08000 * 124.72887 * 180.23128 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3420 0.5513 -0.9570 5 6 4.7058 0.4109 -0.7204 6 6 5.7352 0.9320 -1.6341 7 8 5.4080 1.5112 -2.6513 8 8 7.0408 0.7667 -1.3430 9 6 8.0006 1.3069 -2.2891 10 6 9.4201 1.0251 -1.7925 11 6 10.4164 1.5852 -2.7748 12 1 10.0715 2.0918 -3.6641 13 6 11.7680 1.4518 -2.5376 14 7 12.6374 1.9401 -3.3951 15 14 12.3644 0.5761 -0.9991 16 1 12.5238 -0.8724 -1.2844 17 1 13.6708 1.1450 -0.5807 18 1 11.3727 0.7598 0.0909 19 6 5.0049 -0.2486 0.4384 20 16 3.5772 -0.7106 1.2499 21 1 2.9413 1.0514 -1.8264 22 1 7.8548 2.3832 -2.3802 23 1 7.8557 0.8370 -3.2619 24 1 9.5647 1.4953 -0.8198 25 1 9.5662 -0.0511 -1.7011 26 1 13.5883 1.8466 -3.2280 27 1 6.0056 -0.4494 0.7914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324653527.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:03 Heat of formation + Delta-G solvation = -49.544248 kcal Electronic energy + Delta-G solvation = -14607.025146 eV Core-core repulsion = 11842.108846 eV Total energy + Delta-G solvation = -2764.916300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.51577 -39.15769 -37.71898 -37.27805 -35.35850 -32.84636 -31.49917 -27.56416 -26.54685 -24.50539 -22.54281 -20.93914 -20.22351 -19.16977 -18.41051 -17.54183 -17.33673 -16.95485 -16.25458 -15.54457 -15.29773 -15.03601 -14.88522 -14.48365 -14.14896 -13.84190 -13.66183 -13.55415 -13.21215 -13.10690 -12.52442 -12.45212 -12.22412 -11.78042 -11.54061 -11.46483 -11.40578 -10.78017 -10.10964 -9.73940 -8.31101 -6.39624 -0.76549 0.02007 0.31265 0.56322 1.41743 1.43805 1.55901 1.58992 1.80835 1.83283 2.21328 2.37787 2.77240 3.04153 3.75388 3.96007 4.09356 4.22082 4.23913 4.51041 4.66880 4.78298 4.90507 5.10908 5.33941 5.51540 5.55809 6.18686 6.27296 6.67052 6.69705 7.25502 8.85010 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.047829 B = 0.003982 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.275056 B = 7029.387914 C = 7594.216054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.306 3.694 3 C -0.195 4.195 4 C -0.011 4.011 5 C -0.174 4.174 6 C 0.521 3.479 7 O -0.543 6.543 8 O -0.350 6.350 9 C 0.094 3.906 10 C -0.003 4.003 11 C -0.544 4.544 12 H 0.033 0.967 13 C 0.009 3.991 14 N -0.947 5.947 15 Si 0.956 3.044 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.238 1.238 19 C -0.156 4.156 20 S 0.401 5.599 21 H 0.158 0.842 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.270 0.730 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.991 -8.333 14.674 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.010 4.010 3 C -0.315 4.315 4 C -0.045 4.045 5 C -0.189 4.189 6 C 0.365 3.635 7 O -0.435 6.435 8 O -0.267 6.267 9 C 0.021 3.979 10 C -0.040 4.040 11 C -0.582 4.582 12 H 0.051 0.949 13 C -0.189 4.189 14 N -0.586 5.586 15 Si 0.778 3.222 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.161 1.161 19 C -0.296 4.296 20 S 0.669 5.331 21 H 0.176 0.824 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.924 -8.917 15.704 26.158 hybrid contribution 1.501 1.042 -1.870 2.615 sum -17.423 -7.875 13.834 23.599 Atomic orbital electron populations 1.81346 1.12228 1.10081 1.08431 1.24253 0.90841 0.92687 0.93171 1.19819 0.89065 1.16806 1.05843 1.20166 0.90167 0.95495 0.98668 1.17945 0.91457 1.11140 0.98313 1.20969 0.82551 0.75903 0.84055 1.90841 1.83047 1.41440 1.28188 1.86484 1.15920 1.72995 1.51278 1.22983 0.86688 0.97753 0.90476 1.19465 0.89222 0.98163 0.97165 1.21147 0.91532 1.37865 1.07607 0.94868 1.26000 0.96588 0.95756 1.00514 1.70055 1.02579 1.47360 1.38611 0.85579 0.78146 0.78928 0.79557 1.18811 1.20994 1.16086 1.26852 1.08320 0.97564 0.96881 1.83031 0.88339 1.46241 1.15512 0.82407 0.92408 0.92399 0.94246 0.94370 0.92152 0.77189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.11 18.54 19.00 0.35 -9.76 15 2 C 0.31 5.49 15.79 88.33 1.39 6.89 15 3 C -0.20 -2.76 6.24 22.73 0.14 -2.62 15 4 C -0.01 -0.20 9.71 21.70 0.21 0.01 15 5 C -0.17 -3.55 5.82 -21.09 -0.12 -3.67 15 6 C 0.52 15.89 7.92 70.17 0.56 16.45 15 7 O -0.54 -20.24 16.48 19.70 0.32 -19.92 15 8 O -0.35 -11.60 9.84 -56.96 -0.56 -12.16 15 9 C 0.09 3.81 5.42 71.98 0.39 4.20 15 10 C 0.00 -0.12 4.42 29.85 0.13 0.01 15 11 C -0.54 -30.56 9.66 25.60 0.25 -30.31 15 12 H 0.03 2.07 7.99 -2.91 -0.02 2.05 15 13 C 0.01 0.52 5.47 84.65 0.46 0.98 15 14 N -0.95 -57.93 13.96 21.45 0.30 -57.63 15 15 Si 0.96 41.57 27.47 68.60 1.88 43.45 15 16 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 18 H -0.24 -9.30 6.54 99.48 0.65 -8.65 15 19 C -0.16 -1.95 10.58 67.45 0.71 -1.24 15 20 S 0.40 3.04 23.03 -56.49 -1.30 1.74 15 21 H 0.16 2.97 7.99 -2.91 -0.02 2.94 15 22 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.04 1.68 7.20 -2.39 -0.02 1.67 15 25 H 0.04 1.61 7.57 -2.39 -0.02 1.59 15 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 27 H 0.21 1.97 8.00 -2.91 -0.02 1.94 15 Total: -1.00 -70.73 274.41 6.27 -64.45 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: 1.15 Total: -0.87 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 4.13 Total: -9.31 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: 0.65 Total: -67.39 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.24 Total: -32.07 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.88 Total: 43.45 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.30 Total: 1.74 kcal Total: -70.73 6.27 -64.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324653527.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.911 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds