Wall clock time and date at job start Sun Mar 29 2020 23:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47377 * 25.13658 * 3 2 1 5 5 C 1.37089 * 120.00200 * 263.95174 * 4 3 2 6 6 H 1.08001 * 119.99901 * 200.21528 * 5 4 3 7 7 C 1.38951 * 120.00160 * 20.21885 * 5 4 3 8 8 N 1.31410 * 119.99866 * 21.42473 * 7 5 4 9 9 Si 1.86804 * 120.00174 * 201.42780 * 7 5 4 10 10 H 1.48492 * 109.47100 * 89.99570 * 9 7 5 11 11 H 1.48495 * 109.46799 * 210.00142 * 9 7 5 12 12 H 1.48501 * 109.46768 * 329.99877 * 9 7 5 13 13 C 1.34777 * 119.99608 * 83.95357 * 4 3 2 14 14 O 1.21296 * 120.00014 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00265 * 359.97438 * 13 4 3 16 16 C 1.50705 * 109.47102 * 180.02562 * 15 13 4 17 17 C 1.33632 * 122.74902 * 124.73726 * 16 15 13 18 18 S 1.76198 * 107.92467 * 179.97438 * 17 16 15 19 19 C 1.70984 * 90.28063 * 0.27596 * 18 17 16 20 20 N 1.29025 * 110.16428 * 359.83523 * 19 18 17 21 21 H 1.09003 * 109.46943 * 265.13756 * 3 2 1 22 22 H 1.09001 * 109.46819 * 145.13995 * 3 2 1 23 23 H 0.96996 * 120.00066 * 179.97438 * 8 7 5 24 24 H 1.08995 * 109.47039 * 59.99968 * 15 13 4 25 25 H 1.08995 * 109.47223 * 300.00016 * 15 13 4 26 26 H 1.07999 * 126.04500 * 0.03380 * 17 16 15 27 27 H 1.07998 * 124.91387 * 179.84141 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2495 -0.5867 5 6 3.4439 -2.2981 0.2253 6 1 4.0935 -3.0768 -0.1462 7 6 2.9597 -2.3592 1.5263 8 7 1.8767 -1.6921 1.8563 9 14 3.8483 -3.3897 2.8062 10 1 4.8700 -2.5568 3.4898 11 1 2.8697 -3.8911 3.8042 12 1 4.5114 -4.5403 2.1418 13 6 3.2057 -1.3686 -1.9248 14 8 3.6101 -2.4038 -2.4106 15 6 2.8239 -0.2160 -2.8174 16 6 3.0363 -0.6045 -4.2579 17 6 2.0684 -0.5320 -5.1765 18 16 2.7378 -1.0742 -6.7135 19 6 4.2504 -1.3521 -5.9664 20 7 4.1900 -1.0494 -4.7136 21 1 2.9713 0.0879 1.0240 22 1 2.9709 0.8441 -0.5874 23 1 1.5385 -1.7350 2.7643 24 1 3.4428 0.6488 -2.5789 25 1 1.7747 0.0335 -2.6597 26 1 1.0551 -0.1990 -5.0070 27 1 5.1292 -1.7267 -6.4702 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330237831.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:00 Heat of formation + Delta-G solvation = 55.524206 kcal Electronic energy + Delta-G solvation = -15708.475849 eV Core-core repulsion = 12980.408411 eV Total energy + Delta-G solvation = -2728.067439 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81484 -38.38310 -35.71332 -34.29488 -32.14009 -31.40547 -28.14107 -27.31018 -25.04504 -24.13550 -20.05347 -19.03599 -17.97085 -17.48061 -16.45419 -16.26821 -15.47905 -14.77067 -14.23114 -14.03285 -13.71670 -13.16290 -13.03208 -12.95818 -12.49179 -12.11188 -11.81387 -11.51062 -11.33728 -11.11516 -11.09551 -10.56139 -10.37695 -10.28723 -9.35555 -9.24639 -9.21283 -8.75034 -8.41490 -7.98677 -6.47402 -3.97644 0.95470 1.60758 1.91510 3.09058 3.13221 3.24566 3.29158 3.59824 3.82081 3.97464 4.14731 4.46764 4.82307 4.93642 5.20279 5.21605 5.39227 5.49710 5.76748 5.77349 5.94474 6.15802 6.37311 6.48012 7.50556 7.93775 8.05562 8.32445 8.73686 9.04571 9.22557 9.78579 10.59270 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.006211 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.626853 B = 4507.244656 C = 5128.518065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.245 3.755 3 C 0.221 3.779 4 N -0.447 5.447 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.878 5.878 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.553 6.553 15 C -0.069 4.069 16 C 0.101 3.899 17 C -0.256 4.256 18 S 0.081 5.919 19 C 0.025 3.975 20 N -0.434 5.434 21 H 0.125 0.875 22 H 0.085 0.915 23 H 0.272 0.728 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.175 0.825 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 6.279 -10.404 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.073 4.073 3 C 0.093 3.907 4 N -0.169 5.169 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.517 5.517 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.433 6.433 15 C -0.112 4.112 16 C -0.031 4.031 17 C -0.394 4.394 18 S 0.332 5.668 19 C -0.275 4.275 20 N -0.147 5.147 21 H 0.142 0.858 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.192 0.808 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.838 5.558 -11.168 12.609 hybrid contribution 0.450 -0.370 1.746 1.840 sum 2.288 5.189 -9.422 10.997 Atomic orbital electron populations 1.80892 1.13604 1.09823 1.10979 1.29343 0.95398 0.91497 0.91096 1.18702 0.81600 0.87666 1.02707 1.43587 1.57403 1.11988 1.03918 1.19687 1.27701 1.03855 0.92551 0.87548 1.25271 0.94851 0.98137 0.98947 1.69836 1.18124 1.43316 1.20447 0.85909 0.78979 0.79925 0.79862 1.20164 1.21194 1.19382 1.19810 0.83771 0.88786 0.82308 1.90579 1.48777 1.30333 1.73652 1.20331 1.03086 0.99490 0.88288 1.19793 0.87656 0.98945 0.96686 1.26750 1.04955 1.12709 0.95014 1.83770 1.08523 1.60885 1.13574 1.28381 1.01472 1.04720 0.92910 1.66030 1.25948 1.11205 1.11470 0.85768 0.89754 0.91715 0.88072 0.88699 0.80761 0.78738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.03 18.54 42.15 0.78 -10.25 15 2 C 0.25 5.29 12.82 -20.76 -0.27 5.02 15 3 C 0.22 4.28 4.91 -6.83 -0.03 4.25 15 4 N -0.45 -10.44 2.60 -117.94 -0.31 -10.75 15 5 C -0.31 -8.07 9.27 -14.94 -0.14 -8.21 15 6 H 0.11 2.95 7.43 -52.49 -0.39 2.56 15 7 C 0.03 0.78 4.84 -17.47 -0.08 0.70 15 8 N -0.88 -22.28 9.58 55.50 0.53 -21.75 15 9 Si 0.93 19.85 29.60 -169.99 -5.03 14.81 15 10 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 11 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 13 C 0.47 10.72 7.53 -10.99 -0.08 10.64 15 14 O -0.55 -14.93 15.12 5.54 0.08 -14.85 15 15 C -0.07 -1.21 4.80 -29.03 -0.14 -1.35 15 16 C 0.10 1.77 5.64 -84.23 -0.47 1.29 15 17 C -0.26 -3.73 11.07 29.12 0.32 -3.41 15 18 S 0.08 0.99 23.22 -107.50 -2.50 -1.51 15 19 C 0.02 0.34 12.23 51.58 0.63 0.98 15 20 N -0.43 -7.86 9.68 -11.90 -0.12 -7.97 15 21 H 0.12 2.46 6.63 -51.93 -0.34 2.12 15 22 H 0.08 1.21 6.69 -51.93 -0.35 0.87 15 23 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 24 H 0.10 1.47 7.42 -51.93 -0.39 1.09 15 25 H 0.09 1.54 7.38 -51.93 -0.38 1.15 15 26 H 0.18 2.15 8.06 -52.49 -0.42 1.72 15 27 H 0.20 1.99 8.06 -52.49 -0.42 1.56 15 LS Contribution 262.73 15.07 3.96 3.96 Total: -1.00 -32.84 262.73 -4.69 -37.53 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -1.83 Total: 0.86 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -0.27 Total: 9.91 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.89 Total: -50.71 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.81 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.84 -4.69 -37.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330237831.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.053 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds